Wall clock time and date at job start Tue Mar 31 2020 14:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00260 * 2 1 4 4 C 1.50697 * 109.46936 * 66.04838 * 3 2 1 5 5 H 1.08003 * 120.00347 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00247 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99438 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00437 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47275 * 59.99375 * 8 6 4 10 10 H 1.48498 * 109.47420 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47109 * 299.99390 * 8 6 4 12 12 C 1.46909 * 110.99833 * 236.04516 * 2 1 3 13 13 C 1.52992 * 109.47184 * 293.95806 * 12 2 1 14 14 H 1.08998 * 109.47396 * 59.99779 * 13 12 2 15 15 O 1.42904 * 109.47090 * 299.99789 * 13 12 2 16 16 C 1.52995 * 109.47161 * 179.97438 * 13 12 2 17 17 N 1.46902 * 109.47308 * 184.99778 * 16 13 12 18 18 C 1.46900 * 111.00308 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.47207 * 180.02562 * 18 17 16 20 20 O 1.42893 * 109.47267 * 64.99934 * 19 18 17 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 18 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 1.08996 * 109.47540 * 183.95371 * 1 2 3 29 29 H 1.09004 * 109.47249 * 303.95567 * 1 2 3 30 30 H 1.09004 * 109.47507 * 63.94834 * 1 2 3 31 31 H 1.09003 * 109.46962 * 186.04832 * 3 2 1 32 32 H 1.09000 * 109.47207 * 306.04576 * 3 2 1 33 33 H 0.97002 * 119.99496 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.46672 * 173.95683 * 12 2 1 35 35 H 1.09000 * 109.46798 * 53.95675 * 12 2 1 36 36 H 0.96692 * 113.99948 * 300.00022 * 15 13 12 37 37 H 1.09000 * 109.47466 * 64.99993 * 16 13 12 38 38 H 1.09002 * 109.47142 * 304.99586 * 16 13 12 39 39 H 1.00897 * 111.00090 * 303.95259 * 17 16 13 40 40 H 1.08997 * 109.47263 * 59.99365 * 18 17 16 41 41 H 1.09007 * 109.46933 * 299.99823 * 18 17 16 42 42 H 1.08994 * 109.46599 * 304.99408 * 19 18 17 43 43 H 1.09001 * 109.46881 * 185.00066 * 19 18 17 44 44 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 45 45 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 46 46 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 47 47 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0747 1.5111 2.0489 6 6 2.0269 3.3494 1.5286 7 7 2.7121 4.0018 0.6150 8 14 1.5832 4.1867 3.1383 9 1 2.1759 3.4294 4.2699 10 1 2.1153 5.5730 3.1383 11 1 0.1061 4.2230 3.2867 12 6 1.9954 -0.7661 -1.1377 13 6 1.6313 -2.2426 -0.9704 14 1 0.5471 -2.3474 -0.9324 15 8 2.2008 -2.7392 0.2425 16 6 2.1790 -3.0403 -2.1556 17 7 1.7285 -4.4350 -2.0572 18 6 2.2370 -5.2331 -3.1808 19 6 1.7474 -6.6762 -3.0442 20 8 0.3244 -6.7104 -3.1697 21 6 -0.2748 -7.9269 -3.0720 22 6 0.4909 -9.0633 -2.8605 23 6 -0.1201 -10.2988 -2.7622 24 6 -1.4942 -10.4036 -2.8738 25 6 -2.2615 -9.2731 -3.0847 26 6 -1.6553 -8.0336 -3.1840 27 9 -2.4048 -6.9284 -3.3896 28 1 -0.3634 -1.0252 0.0709 29 1 -0.3634 0.5740 0.8524 30 1 -0.3634 0.4513 -0.9233 31 1 3.0798 1.3443 -0.1083 32 1 1.5612 1.9273 -0.8309 33 1 2.9867 4.9179 0.7770 34 1 3.0796 -0.6612 -1.1756 35 1 1.5610 -0.3872 -2.0628 36 1 3.1650 -2.6772 0.2785 37 1 3.2685 -3.0087 -2.1425 38 1 1.8140 -2.6054 -3.0860 39 1 1.9992 -4.8410 -1.1741 40 1 3.3268 -5.2165 -3.1744 41 1 1.8727 -4.8135 -4.1186 42 1 2.0356 -7.0667 -2.0683 43 1 2.1960 -7.2877 -3.8271 44 1 1.5643 -8.9829 -2.7725 45 1 0.4762 -11.1833 -2.5930 46 1 -1.9690 -11.3706 -2.7969 47 1 -3.3347 -9.3575 -3.1712 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580998991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:08 Heat of formation + Delta-G solvation = -125.305441 kcal Electronic energy + Delta-G solvation = -26791.857453 eV Core-core repulsion = 22695.538857 eV Total energy + Delta-G solvation = -4096.318596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.79096 -40.96518 -39.64739 -38.53747 -37.43676 -36.08351 -34.62555 -32.16237 -31.62927 -30.80624 -29.70230 -28.80010 -27.17084 -25.26685 -24.20810 -23.41449 -22.70401 -22.45106 -21.72883 -19.49669 -18.58292 -18.19233 -17.69596 -17.39238 -17.22031 -17.17066 -16.73981 -16.38300 -16.23831 -15.95134 -15.66704 -15.55186 -15.31504 -15.12828 -14.82978 -14.69795 -14.25343 -13.91141 -13.78444 -13.70665 -13.31928 -13.10514 -13.00211 -12.79282 -12.73373 -12.57329 -12.53655 -12.39120 -12.35955 -12.02015 -11.96995 -11.84859 -11.63255 -11.42997 -10.73077 -10.62211 -9.91573 -9.37095 -9.16127 -8.98660 -8.21511 -6.31440 0.15622 0.31409 1.40421 1.43820 1.51818 2.14067 2.39665 2.64273 2.89711 3.10680 3.29836 3.40403 3.68814 3.73641 3.88681 3.97814 4.01986 4.11656 4.16120 4.23880 4.26335 4.35110 4.38161 4.42263 4.48211 4.55961 4.65655 4.68687 4.71044 4.80007 4.82890 5.01830 5.04467 5.13226 5.13380 5.16014 5.28667 5.30183 5.45472 5.63566 5.74864 5.96275 6.04399 6.30132 6.35948 6.46294 6.61879 6.84031 6.96185 7.38039 8.89212 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024793 B = 0.001798 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.058343 B =15564.950216 C =16049.574183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.538 5.538 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.128 3.872 14 H 0.087 0.913 15 O -0.559 6.559 16 C 0.041 3.959 17 N -0.695 5.695 18 C 0.059 3.941 19 C 0.059 3.941 20 O -0.320 6.320 21 C 0.081 3.919 22 C -0.188 4.188 23 C -0.085 4.085 24 C -0.131 4.131 25 C -0.121 4.121 26 C 0.023 3.977 27 F -0.155 7.155 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.009 0.991 31 H 0.007 0.993 32 H -0.040 1.040 33 H 0.265 0.735 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.380 0.620 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.348 0.652 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.158 0.842 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -32.899 -10.490 34.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.068 3.932 14 H 0.105 0.895 15 O -0.365 6.365 16 C -0.089 4.089 17 N -0.328 5.328 18 C -0.070 4.070 19 C -0.015 4.015 20 O -0.234 6.234 21 C 0.034 3.966 22 C -0.207 4.207 23 C -0.103 4.103 24 C -0.149 4.149 25 C -0.139 4.139 26 C 0.004 3.996 27 F -0.134 7.134 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.025 0.975 32 H -0.022 1.022 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.228 0.772 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.168 0.832 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.175 0.825 45 H 0.181 0.819 46 H 0.181 0.819 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.569 -32.705 -10.302 34.386 hybrid contribution 0.991 1.800 -0.184 2.063 sum -1.578 -30.906 -10.486 32.674 Atomic orbital electron populations 1.22205 0.88069 1.00884 0.99562 1.61942 1.07777 1.14916 1.41571 1.19406 0.93736 0.83871 0.94901 1.21440 1.34970 0.97551 1.02395 0.92154 1.25923 0.95003 0.97992 1.00791 1.70078 1.39280 1.11899 1.36170 0.85420 0.78767 0.77182 0.79149 1.19312 1.20644 1.19403 1.22822 1.00389 0.95252 0.91999 1.21744 0.98322 0.89174 0.83966 0.89508 1.86570 1.26153 1.84716 1.39071 1.22472 0.98288 0.89305 0.98795 1.60282 1.64545 1.01900 1.06047 1.22076 0.98255 0.91358 0.95271 1.23115 0.77538 0.98076 1.02803 1.86244 1.23861 1.26315 1.87014 1.19380 0.91226 0.86637 0.99321 1.21494 1.01337 0.91543 1.06309 1.21488 0.95153 0.97602 0.96015 1.21345 0.93958 0.98793 1.00804 1.21334 1.02185 0.89959 1.00440 1.17615 0.86824 0.84233 1.10962 1.91451 1.76212 1.52606 1.93174 0.90935 0.92580 0.97211 0.97534 1.02234 0.92658 0.90952 0.95152 0.77203 0.93125 0.90358 0.83229 0.90430 0.90692 0.90641 0.88969 0.82483 0.81859 0.81872 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 9.14 127.69 1.17 2.89 16 2 N -0.54 -24.21 4.62 -927.06 -4.28 -28.50 16 3 C 0.21 11.37 4.72 85.56 0.40 11.77 16 4 C -0.53 -30.74 8.46 25.60 0.22 -30.53 16 5 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 6 C 0.00 0.05 5.46 84.65 0.46 0.51 16 7 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 8 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 C 0.02 0.87 4.62 86.30 0.40 1.27 16 13 C 0.13 3.69 3.07 30.59 0.09 3.78 16 14 H 0.09 2.82 6.55 -2.39 -0.02 2.81 16 15 O -0.56 -16.58 12.72 -148.98 -1.90 -18.47 16 16 C 0.04 0.90 5.36 86.30 0.46 1.37 16 17 N -0.69 -14.50 6.45 -513.88 -3.31 -17.82 16 18 C 0.06 0.90 6.07 86.30 0.52 1.42 16 19 C 0.06 0.82 5.02 71.98 0.36 1.18 16 20 O -0.32 -7.31 9.95 -93.06 -0.93 -8.24 16 21 C 0.08 1.66 6.69 22.53 0.15 1.81 16 22 C -0.19 -2.43 9.04 22.36 0.20 -2.22 16 23 C -0.08 -0.77 10.04 22.26 0.22 -0.55 16 24 C -0.13 -1.29 10.04 22.28 0.22 -1.07 16 25 C -0.12 -1.84 10.02 22.29 0.22 -1.61 16 26 C 0.02 0.52 7.31 22.45 0.16 0.69 16 27 F -0.16 -4.41 17.11 44.97 0.77 -3.64 16 28 H 0.07 2.67 6.47 -2.39 -0.02 2.66 16 29 H 0.06 2.53 6.76 -2.38 -0.02 2.51 16 30 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.01 0.38 7.93 -2.39 -0.02 0.36 16 32 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 33 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.07 2.47 7.93 -2.39 -0.02 2.45 16 35 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 36 H 0.38 8.82 9.05 -74.06 -0.67 8.15 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.35 7.04 8.29 -89.70 -0.74 6.30 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.08 0.85 7.66 -2.39 -0.02 0.84 16 43 H 0.09 0.79 7.66 -2.39 -0.02 0.77 16 44 H 0.16 1.20 6.30 -2.91 -0.02 1.19 16 45 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 46 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 47 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -75.39 391.23 -2.49 -77.88 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.43 Total: 17.46 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.28 Total: -9.29 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -7.31 Total: -103.01 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -2.82 Total: -26.71 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -75.39 -2.49 -77.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580998991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.422 kcal (2) G-P(sol) polarization free energy of solvation -75.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds