Wall clock time and date at job start Tue Mar 31 2020 14:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99847 * 2 1 4 4 C 1.50698 * 109.47105 * 293.94873 * 3 2 1 5 5 H 1.07997 * 120.00206 * 0.02562 * 4 3 2 6 6 C 1.37884 * 120.00045 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99865 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99954 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47232 * 89.99539 * 8 6 4 10 10 H 1.48502 * 109.46945 * 209.99699 * 8 6 4 11 11 H 1.48501 * 109.47126 * 329.99545 * 8 6 4 12 12 C 1.46899 * 110.99808 * 123.95312 * 2 1 3 13 13 C 1.52992 * 109.47502 * 66.04597 * 12 2 1 14 14 H 1.09004 * 109.47471 * 305.00344 * 13 12 2 15 15 O 1.42901 * 109.47281 * 64.99957 * 13 12 2 16 16 C 1.52995 * 109.47460 * 185.00068 * 13 12 2 17 17 N 1.46902 * 109.47308 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00308 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.47207 * 180.02562 * 18 17 16 20 20 O 1.42893 * 109.47267 * 64.99934 * 19 18 17 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 18 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 1.08995 * 109.47355 * 296.04770 * 1 2 3 29 29 H 1.08998 * 109.46577 * 56.05097 * 1 2 3 30 30 H 1.08997 * 109.46743 * 176.04756 * 1 2 3 31 31 H 1.08997 * 109.47619 * 53.95041 * 3 2 1 32 32 H 1.09002 * 109.46948 * 173.95248 * 3 2 1 33 33 H 0.96998 * 119.99644 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46910 * 306.04391 * 12 2 1 35 35 H 1.08999 * 109.46858 * 186.05048 * 12 2 1 36 36 H 0.96699 * 114.00003 * 59.99770 * 15 13 12 37 37 H 1.09000 * 109.47466 * 60.00200 * 16 13 12 38 38 H 1.09002 * 109.47142 * 299.99793 * 16 13 12 39 39 H 1.00897 * 111.00090 * 303.95259 * 17 16 13 40 40 H 1.08997 * 109.47263 * 59.99365 * 18 17 16 41 41 H 1.09007 * 109.46933 * 299.99823 * 18 17 16 42 42 H 1.08994 * 109.46599 * 304.99408 * 19 18 17 43 43 H 1.09001 * 109.46881 * 185.00066 * 19 18 17 44 44 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 45 45 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 46 46 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 47 47 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3495 -1.5285 7 7 1.7136 3.9392 -2.6615 8 14 2.9999 4.2762 -0.2310 9 1 4.4523 4.0637 -0.4557 10 1 2.6917 5.7260 -0.3227 11 1 2.6292 3.7757 1.1171 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2425 0.9705 14 1 0.5532 -2.3389 0.8433 15 8 2.2956 -2.7696 -0.1798 16 6 2.0699 -3.0198 2.2132 17 7 1.7199 -4.4375 2.0530 18 6 2.1263 -5.2165 3.2302 19 6 1.7466 -6.6845 3.0263 20 8 2.4987 -7.2243 1.9378 21 6 2.2796 -8.5287 1.6230 22 6 1.3607 -9.2730 2.3469 23 6 1.1399 -10.5987 2.0256 24 6 1.8338 -11.1842 0.9828 25 6 2.7510 -10.4457 0.2584 26 6 2.9761 -9.1181 0.5755 27 9 3.8719 -8.3959 -0.1324 28 1 -0.3634 0.4512 0.9232 29 1 -0.3632 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 1.5611 1.9274 0.8308 32 1 3.0798 1.3444 0.1083 33 1 1.9876 4.8556 -2.8232 34 1 1.5611 -0.3871 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 3.2602 -2.7167 -0.1358 37 1 1.5633 -2.6179 3.0907 38 1 3.1482 -2.9235 2.3403 39 1 0.7339 -4.5480 1.8695 40 1 1.6202 -4.8293 4.1145 41 1 3.2050 -5.1358 3.3646 42 1 0.6821 -6.7568 2.8037 43 1 1.9668 -7.2462 3.9341 44 1 0.8175 -8.8168 3.1613 45 1 0.4209 -11.1771 2.5868 46 1 1.6595 -12.2206 0.7342 47 1 3.2914 -10.9052 -0.5559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580998992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:12 Heat of formation + Delta-G solvation = -91.674811 kcal Electronic energy + Delta-G solvation = -26866.715400 eV Core-core repulsion = 22771.855137 eV Total energy + Delta-G solvation = -4094.860263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.93986 -40.34820 -38.44595 -37.84380 -36.14690 -35.02589 -32.44873 -31.31850 -31.06344 -29.94267 -28.73198 -27.48976 -25.78307 -24.01952 -23.08824 -22.81357 -21.91983 -21.08585 -20.10077 -18.86827 -17.49318 -17.00976 -16.89631 -16.60344 -16.36541 -15.79276 -15.53730 -15.48442 -15.13763 -14.74812 -14.60652 -14.46576 -14.29527 -14.15183 -13.68869 -13.50551 -13.13956 -13.07413 -12.68963 -12.45059 -12.30253 -12.26206 -11.97128 -11.78290 -11.60493 -11.39424 -11.29315 -11.19239 -10.96905 -10.76482 -10.51545 -10.27333 -9.99725 -9.49606 -9.33989 -9.20035 -8.59087 -8.55240 -8.51744 -7.31513 -6.02936 -3.99992 0.73586 0.89063 2.71737 3.19814 3.28656 3.35815 3.36988 3.74140 3.91814 4.27136 4.40612 4.42899 4.55386 4.61633 4.63451 4.72214 4.81812 4.84285 4.91280 4.97362 5.09541 5.16873 5.26657 5.31356 5.40681 5.48069 5.54916 5.57442 5.62615 5.66270 5.78414 5.94104 5.97419 6.10632 6.21700 6.27770 6.32740 6.68638 6.71210 6.86441 6.98659 6.99875 7.14240 7.60253 7.91407 8.02655 8.17894 8.68465 9.06986 9.58499 11.10265 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.001858 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.846019 B =15069.132932 C =15491.879487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.022 3.978 13 C 0.117 3.883 14 H 0.093 0.907 15 O -0.533 6.533 16 C 0.027 3.973 17 N -0.671 5.671 18 C 0.059 3.941 19 C 0.063 3.937 20 O -0.286 6.286 21 C 0.103 3.897 22 C -0.188 4.188 23 C -0.091 4.091 24 C -0.134 4.134 25 C -0.117 4.117 26 C 0.070 3.930 27 F -0.129 7.129 28 H 0.008 0.992 29 H 0.081 0.919 30 H 0.049 0.951 31 H -0.014 1.014 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.369 0.631 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.341 0.659 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 -30.170 16.148 34.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.056 3.944 14 H 0.111 0.889 15 O -0.336 6.336 16 C -0.103 4.103 17 N -0.303 5.303 18 C -0.071 4.071 19 C -0.013 4.013 20 O -0.199 6.199 21 C 0.056 3.944 22 C -0.207 4.207 23 C -0.109 4.109 24 C -0.153 4.153 25 C -0.136 4.136 26 C 0.050 3.950 27 F -0.107 7.107 28 H 0.027 0.973 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.004 0.996 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.159 0.841 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.153 0.847 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.591 -30.285 14.955 33.781 hybrid contribution 0.130 1.565 2.392 2.861 sum -0.461 -28.720 17.347 33.555 Atomic orbital electron populations 1.22293 0.88373 0.99974 1.00679 1.61839 1.07259 1.16023 1.39229 1.20197 0.94812 0.84170 0.97259 1.21046 1.35544 0.97135 1.00865 0.90024 1.24912 0.95858 0.97372 0.95293 1.69896 1.46944 1.13234 1.23836 0.86862 0.80934 0.79273 0.82649 1.20137 1.21208 1.19449 1.22788 1.00544 0.94318 0.93138 1.21843 0.97687 0.90318 0.84511 0.88922 1.86620 1.22966 1.83807 1.40232 1.22743 1.01684 0.87888 0.98012 1.60279 1.23608 1.08755 1.37650 1.22016 1.02558 0.90424 0.92069 1.22915 0.95602 0.94454 0.88321 1.86311 1.61994 1.21022 1.50538 1.19111 0.95706 0.84974 0.94659 1.21173 1.01156 0.95707 1.02668 1.21011 0.98862 0.94143 0.96931 1.20918 0.97348 1.00419 0.96577 1.21065 0.99724 0.91596 1.01215 1.17053 0.94009 0.90323 0.93641 1.91541 1.64984 1.77469 1.76734 0.97348 0.90048 0.93190 0.99619 0.95953 0.92688 0.95517 0.91082 0.78470 0.94706 0.90537 0.84078 0.93072 0.89698 0.91797 0.91433 0.84702 0.85193 0.84942 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.14 60.07 0.55 1.24 16 2 N -0.52 -11.11 4.70 -244.38 -1.15 -12.26 16 3 C 0.16 4.00 3.79 -4.98 -0.02 3.98 16 4 C -0.51 -14.74 9.01 -34.44 -0.31 -15.05 16 5 H 0.08 2.59 7.37 -52.49 -0.39 2.21 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 8 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 12 C 0.02 0.36 4.59 -3.83 -0.02 0.35 16 13 C 0.12 1.65 3.13 -26.74 -0.08 1.56 16 14 H 0.09 1.34 6.34 -51.93 -0.33 1.02 16 15 O -0.53 -8.76 13.15 -35.23 -0.46 -9.22 16 16 C 0.03 0.29 5.35 -3.83 -0.02 0.27 16 17 N -0.67 -7.02 6.32 -113.78 -0.72 -7.73 16 18 C 0.06 0.47 6.07 -3.82 -0.02 0.44 16 19 C 0.06 0.46 5.02 37.16 0.19 0.65 16 20 O -0.29 -3.21 9.95 -19.60 -0.20 -3.41 16 21 C 0.10 1.05 6.69 -39.18 -0.26 0.79 16 22 C -0.19 -1.39 9.04 -39.45 -0.36 -1.75 16 23 C -0.09 -0.56 10.04 -39.59 -0.40 -0.95 16 24 C -0.13 -0.84 10.04 -39.57 -0.40 -1.24 16 25 C -0.12 -0.94 10.02 -39.54 -0.40 -1.33 16 26 C 0.07 0.76 7.31 -39.30 -0.29 0.47 16 27 F -0.13 -1.71 17.11 2.25 0.04 -1.67 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 30 H 0.05 0.86 6.37 -51.93 -0.33 0.53 16 31 H -0.01 -0.34 7.18 -51.93 -0.37 -0.72 16 32 H 0.02 0.55 7.36 -51.93 -0.38 0.17 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 36 H 0.37 5.15 9.05 45.56 0.41 5.56 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.34 3.36 8.73 -39.29 -0.34 3.01 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 42 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 43 H 0.07 0.35 7.66 -51.93 -0.40 -0.04 16 44 H 0.14 0.70 6.30 -52.48 -0.33 0.37 16 45 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 46 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 47 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -34.87 388.15 -9.06 -43.93 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.59 Total: 3.32 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.93 Total: -8.69 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -1.09 Total: -47.17 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.66 Total: -12.63 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.87 -9.06 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580998992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.741 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds