Wall clock time and date at job start Tue Mar 31 2020 14:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99847 * 2 1 4 4 C 1.50698 * 109.47105 * 293.94873 * 3 2 1 5 5 H 1.07997 * 120.00206 * 0.02562 * 4 3 2 6 6 C 1.37884 * 120.00045 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99865 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99954 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47232 * 89.99539 * 8 6 4 10 10 H 1.48502 * 109.46945 * 209.99699 * 8 6 4 11 11 H 1.48501 * 109.47126 * 329.99545 * 8 6 4 12 12 C 1.46899 * 110.99808 * 123.95312 * 2 1 3 13 13 C 1.52992 * 109.47502 * 66.04597 * 12 2 1 14 14 H 1.09004 * 109.47471 * 305.00344 * 13 12 2 15 15 O 1.42901 * 109.47281 * 64.99957 * 13 12 2 16 16 C 1.52995 * 109.47460 * 185.00068 * 13 12 2 17 17 N 1.46902 * 109.47308 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00308 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.47207 * 180.02562 * 18 17 16 20 20 O 1.42893 * 109.47267 * 64.99934 * 19 18 17 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 18 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 1.08995 * 109.47355 * 296.04770 * 1 2 3 29 29 H 1.08998 * 109.46577 * 56.05097 * 1 2 3 30 30 H 1.08997 * 109.46743 * 176.04756 * 1 2 3 31 31 H 1.08997 * 109.47619 * 53.95041 * 3 2 1 32 32 H 1.09002 * 109.46948 * 173.95248 * 3 2 1 33 33 H 0.96998 * 119.99644 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46910 * 306.04391 * 12 2 1 35 35 H 1.08999 * 109.46858 * 186.05048 * 12 2 1 36 36 H 0.96699 * 114.00003 * 59.99770 * 15 13 12 37 37 H 1.09000 * 109.47466 * 60.00200 * 16 13 12 38 38 H 1.09002 * 109.47142 * 299.99793 * 16 13 12 39 39 H 1.00897 * 111.00090 * 303.95259 * 17 16 13 40 40 H 1.08997 * 109.47263 * 59.99365 * 18 17 16 41 41 H 1.09007 * 109.46933 * 299.99823 * 18 17 16 42 42 H 1.08994 * 109.46599 * 304.99408 * 19 18 17 43 43 H 1.09001 * 109.46881 * 185.00066 * 19 18 17 44 44 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 45 45 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 46 46 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 47 47 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3495 -1.5285 7 7 1.7136 3.9392 -2.6615 8 14 2.9999 4.2762 -0.2310 9 1 4.4523 4.0637 -0.4557 10 1 2.6917 5.7260 -0.3227 11 1 2.6292 3.7757 1.1171 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2425 0.9705 14 1 0.5532 -2.3389 0.8433 15 8 2.2956 -2.7696 -0.1798 16 6 2.0699 -3.0198 2.2132 17 7 1.7199 -4.4375 2.0530 18 6 2.1263 -5.2165 3.2302 19 6 1.7466 -6.6845 3.0263 20 8 2.4987 -7.2243 1.9378 21 6 2.2796 -8.5287 1.6230 22 6 1.3607 -9.2730 2.3469 23 6 1.1399 -10.5987 2.0256 24 6 1.8338 -11.1842 0.9828 25 6 2.7510 -10.4457 0.2584 26 6 2.9761 -9.1181 0.5755 27 9 3.8719 -8.3959 -0.1324 28 1 -0.3634 0.4512 0.9232 29 1 -0.3632 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 1.5611 1.9274 0.8308 32 1 3.0798 1.3444 0.1083 33 1 1.9876 4.8556 -2.8232 34 1 1.5611 -0.3871 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 3.2602 -2.7167 -0.1358 37 1 1.5633 -2.6179 3.0907 38 1 3.1482 -2.9235 2.3403 39 1 0.7339 -4.5480 1.8695 40 1 1.6202 -4.8293 4.1145 41 1 3.2050 -5.1358 3.3646 42 1 0.6821 -6.7568 2.8037 43 1 1.9668 -7.2462 3.9341 44 1 0.8175 -8.8168 3.1613 45 1 0.4209 -11.1771 2.5868 46 1 1.6595 -12.2206 0.7342 47 1 3.2914 -10.9052 -0.5559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580998992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:11 Heat of formation + Delta-G solvation = -120.138202 kcal Electronic energy + Delta-G solvation = -26867.949665 eV Core-core repulsion = 22771.855137 eV Total energy + Delta-G solvation = -4096.094528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.77802 -40.95520 -39.61140 -38.53612 -37.43871 -36.09811 -34.60607 -32.17972 -31.62625 -30.90574 -29.98751 -28.97559 -27.14859 -25.09661 -24.12803 -23.40827 -22.66798 -22.34268 -21.69197 -19.48839 -19.03927 -18.17927 -17.69340 -17.40399 -17.24543 -16.97646 -16.71827 -16.32702 -16.14322 -16.03828 -15.74168 -15.46829 -15.32746 -15.24267 -14.83690 -14.55043 -14.48613 -14.11773 -13.79623 -13.71861 -13.46705 -13.09712 -13.02510 -12.80061 -12.73002 -12.52454 -12.41971 -12.38113 -12.28655 -11.94847 -11.91778 -11.83960 -11.63098 -11.50206 -10.79337 -10.67168 -9.91167 -9.30863 -9.15216 -8.96239 -8.28753 -6.32633 0.16042 0.31909 1.33571 1.35641 1.46053 2.15316 2.33629 2.64641 2.87262 3.04014 3.30830 3.37676 3.70969 3.76948 3.89302 3.92758 4.05186 4.10921 4.18587 4.22756 4.29399 4.35447 4.38356 4.43097 4.49596 4.52258 4.62863 4.65239 4.68664 4.75554 4.83763 4.88216 5.00327 5.02196 5.12155 5.13775 5.24083 5.28918 5.45647 5.52026 5.75387 5.94974 6.01709 6.35123 6.35948 6.45932 6.66165 6.73974 7.03872 7.30741 8.88150 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.001858 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.846019 B =15069.132932 C =15491.879487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.544 5.544 3 C 0.172 3.828 4 C -0.519 4.519 5 H 0.034 0.966 6 C 0.004 3.996 7 N -0.949 5.949 8 Si 0.953 3.047 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.250 1.250 12 C 0.023 3.977 13 C 0.123 3.877 14 H 0.089 0.911 15 O -0.558 6.558 16 C 0.040 3.960 17 N -0.691 5.691 18 C 0.061 3.939 19 C 0.058 3.942 20 O -0.319 6.319 21 C 0.081 3.919 22 C -0.188 4.188 23 C -0.085 4.085 24 C -0.132 4.132 25 C -0.121 4.121 26 C 0.023 3.977 27 F -0.155 7.155 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.074 0.926 31 H -0.011 1.011 32 H 0.028 0.972 33 H 0.267 0.733 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.377 0.623 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.343 0.657 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.158 0.842 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -31.967 19.720 37.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.268 5.268 3 C 0.045 3.955 4 C -0.557 4.557 5 H 0.052 0.948 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.776 3.224 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.174 1.174 12 C -0.106 4.106 13 C 0.063 3.937 14 H 0.106 0.894 15 O -0.364 6.364 16 C -0.090 4.090 17 N -0.323 5.323 18 C -0.068 4.068 19 C -0.016 4.016 20 O -0.233 6.233 21 C 0.035 3.965 22 C -0.207 4.207 23 C -0.103 4.103 24 C -0.149 4.149 25 C -0.140 4.140 26 C 0.004 3.996 27 F -0.134 7.134 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.007 0.993 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.225 0.775 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.162 0.838 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.176 0.824 45 H 0.181 0.819 46 H 0.181 0.819 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.867 -32.117 18.549 37.099 hybrid contribution 0.116 1.979 1.226 2.331 sum -0.751 -30.138 19.775 36.054 Atomic orbital electron populations 1.22201 0.87757 1.01013 0.99745 1.61715 1.08103 1.14486 1.42454 1.19947 0.95077 0.85874 0.94595 1.21288 1.34961 0.97553 1.01892 0.94813 1.25923 0.97081 0.98443 0.97865 1.70064 1.48622 1.13889 1.26400 0.85641 0.79309 0.77548 0.79947 1.18970 1.20657 1.17350 1.22887 1.00776 0.95004 0.91927 1.21822 0.97282 0.89166 0.85420 0.89368 1.86584 1.23885 1.84049 1.41850 1.22516 1.01900 0.87950 0.96597 1.60227 1.23939 1.08615 1.39543 1.22068 1.02219 0.90535 0.92003 1.23124 0.95884 0.94196 0.88420 1.86258 1.63211 1.21816 1.52010 1.19376 0.96779 0.85096 0.95267 1.21490 1.00302 0.96186 1.02702 1.21485 0.98548 0.93774 0.96478 1.21340 0.96091 1.01615 0.95899 1.21335 1.00197 0.90676 1.01784 1.17626 0.95284 0.91655 0.95075 1.91455 1.66150 1.78282 1.77547 0.95860 0.93703 0.90746 0.99341 0.95382 0.92419 0.93731 0.90554 0.77550 0.92796 0.90338 0.83828 0.90439 0.90669 0.90700 0.89063 0.82433 0.81854 0.81915 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.78 16 2 N -0.54 -23.03 4.70 -927.07 -4.36 -27.39 16 3 C 0.17 8.43 3.79 85.56 0.32 8.75 16 4 C -0.52 -31.02 9.01 25.60 0.23 -30.79 16 5 H 0.03 2.27 7.37 -2.91 -0.02 2.25 16 6 C 0.00 0.23 5.47 84.66 0.46 0.69 16 7 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 8 Si 0.95 44.60 27.47 68.60 1.88 46.49 16 9 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 12 C 0.02 0.71 4.59 86.30 0.40 1.11 16 13 C 0.12 3.29 3.13 30.59 0.10 3.39 16 14 H 0.09 2.42 6.34 -2.39 -0.02 2.41 16 15 O -0.56 -18.23 13.15 -148.98 -1.96 -20.19 16 16 C 0.04 0.78 5.35 86.30 0.46 1.25 16 17 N -0.69 -13.36 6.32 -513.88 -3.25 -16.61 16 18 C 0.06 0.84 6.07 86.30 0.52 1.36 16 19 C 0.06 0.76 5.02 71.98 0.36 1.12 16 20 O -0.32 -7.18 9.95 -93.06 -0.93 -8.10 16 21 C 0.08 1.66 6.69 22.53 0.15 1.81 16 22 C -0.19 -2.39 9.04 22.36 0.20 -2.18 16 23 C -0.08 -0.77 10.04 22.26 0.22 -0.55 16 24 C -0.13 -1.32 10.04 22.28 0.22 -1.10 16 25 C -0.12 -1.89 10.02 22.29 0.22 -1.66 16 26 C 0.02 0.53 7.31 22.45 0.16 0.69 16 27 F -0.16 -4.49 17.11 44.97 0.77 -3.72 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 2.06 6.76 -2.39 -0.02 2.04 16 30 H 0.07 2.52 6.37 -2.39 -0.02 2.50 16 31 H -0.01 -0.53 7.18 -2.39 -0.02 -0.55 16 32 H 0.03 1.34 7.36 -2.39 -0.02 1.32 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.04 1.26 8.12 -2.39 -0.02 1.24 16 35 H 0.08 2.29 7.93 -2.39 -0.02 2.27 16 36 H 0.38 10.51 9.05 -74.06 -0.67 9.84 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.34 6.22 8.73 -89.70 -0.78 5.44 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 43 H 0.09 0.72 7.66 -2.39 -0.02 0.70 16 44 H 0.16 1.14 6.30 -2.91 -0.02 1.12 16 45 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 46 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 47 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -79.78 388.15 -2.85 -82.63 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.52 Total: 20.63 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.21 Total: -13.32 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -7.31 Total: -104.42 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -2.89 Total: -28.29 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.77 Total: -3.72 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -79.78 -2.85 -82.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580998992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.509 kcal (2) G-P(sol) polarization free energy of solvation -79.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds