Wall clock time and date at job start Tue Mar 31 2020 15:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30286 * 126.34658 * 2 1 4 4 N 1.28537 * 110.05355 * 179.76446 * 3 2 1 5 5 C 1.31218 * 109.85766 * 0.45080 * 4 3 2 6 6 N 1.38570 * 126.47297 * 179.82532 * 5 4 3 7 7 C 1.46899 * 111.00348 * 107.64778 * 6 5 4 8 8 C 1.50698 * 109.47393 * 160.30307 * 7 6 5 9 9 H 1.07997 * 119.99844 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00172 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99859 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00067 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46871 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47058 * 120.00041 * 12 10 8 15 15 H 1.48495 * 109.46778 * 239.99551 * 12 10 8 16 16 C 1.46900 * 111.00025 * 343.69377 * 6 5 4 17 17 C 1.52998 * 109.47102 * 293.95551 * 16 6 5 18 18 C 1.53007 * 117.51707 * 116.28281 * 17 16 6 19 19 C 1.52996 * 59.99809 * 107.48102 * 18 17 16 20 20 N 1.36453 * 107.05338 * 359.56200 * 5 4 3 21 21 C 1.46497 * 127.13792 * 180.28158 * 20 5 4 22 22 C 1.50690 * 109.47405 * 272.32770 * 21 20 5 23 23 C 1.38238 * 120.00427 * 264.29905 * 22 21 20 24 24 C 1.38236 * 119.99960 * 179.76542 * 23 22 21 25 25 C 1.38227 * 120.00065 * 0.50089 * 24 23 22 26 26 C 1.38237 * 120.00146 * 359.75507 * 25 24 23 27 27 C 1.38228 * 119.99980 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47563 * 269.95557 * 1 2 3 29 29 H 1.09001 * 109.47406 * 29.95479 * 1 2 3 30 30 H 1.09000 * 109.47403 * 149.95505 * 1 2 3 31 31 H 1.08999 * 109.47385 * 280.30786 * 7 6 5 32 32 H 1.09009 * 109.46965 * 40.30343 * 7 6 5 33 33 H 0.96998 * 120.00077 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47384 * 173.95062 * 16 6 5 35 35 H 1.09002 * 109.47087 * 53.95341 * 16 6 5 36 36 H 1.09000 * 115.55259 * 330.58076 * 17 16 6 37 37 H 1.09003 * 117.49666 * 214.96869 * 18 17 16 38 38 H 1.08996 * 117.50059 * 359.97438 * 18 17 16 39 39 H 1.09003 * 117.49930 * 252.50712 * 19 18 17 40 40 H 1.09004 * 117.50169 * 107.49252 * 19 18 17 41 41 H 1.09000 * 109.46994 * 32.32806 * 21 20 5 42 42 H 1.09006 * 109.47340 * 152.32373 * 21 20 5 43 43 H 1.08001 * 119.99732 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.99546 * 180.22865 * 24 23 22 45 45 H 1.07998 * 119.99747 * 179.72255 * 25 24 23 46 46 H 1.08001 * 119.99759 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.00316 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0494 0.0000 4 7 3.5129 0.6888 0.0050 5 6 3.5945 -0.6208 -0.0013 6 7 4.7579 -1.3737 -0.0021 7 6 4.9708 -2.0152 1.3021 8 6 5.9246 -3.1711 1.1437 9 1 6.3315 -3.4060 0.1713 10 6 6.2769 -3.9295 2.2399 11 7 5.7809 -3.6438 3.4240 12 14 7.4597 -5.3619 2.0436 13 1 7.8714 -5.4725 0.6211 14 1 8.6583 -5.1337 2.8901 15 1 6.7892 -6.6186 2.4636 16 6 5.9159 -0.5527 -0.3803 17 6 5.7705 -0.1057 -1.8363 18 6 5.6367 1.3946 -2.1051 19 6 6.9356 0.6670 -2.4577 20 7 2.3174 -1.1014 -0.0008 21 6 1.9009 -2.5059 -0.0007 22 6 1.8128 -3.0039 -1.4202 23 6 0.5979 -3.0010 -2.0797 24 6 0.5181 -3.4533 -3.3836 25 6 1.6512 -3.9182 -4.0244 26 6 2.8652 -3.9261 -3.3631 27 6 2.9461 -3.4686 -2.0613 28 1 -0.3634 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5145 31 1 5.3910 -1.2904 1.9993 32 1 4.0186 -2.3800 1.6874 33 1 6.0290 -4.1770 4.1953 34 1 6.8284 -1.1385 -0.2694 35 1 5.9663 0.3239 0.2656 36 1 5.2148 -0.7845 -2.4832 37 1 4.9929 1.7027 -2.9290 38 1 5.6517 2.0634 -1.2447 39 1 7.8056 0.8573 -1.8292 40 1 7.1465 0.4966 -3.5135 41 1 2.6303 -3.1011 0.5485 42 1 0.9252 -2.5956 0.4770 43 1 -0.2883 -2.6421 -1.5774 44 1 -0.4304 -3.4475 -3.9000 45 1 1.5880 -4.2757 -5.0415 46 1 3.7504 -4.2897 -3.8638 47 1 3.8944 -3.4751 -1.5445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582274651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:25 Heat of formation + Delta-G solvation = 137.220968 kcal Electronic energy + Delta-G solvation = -28727.799965 eV Core-core repulsion = 25105.927344 eV Total energy + Delta-G solvation = -3621.872621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.40493 -39.13784 -37.80177 -35.67697 -34.84991 -32.78554 -31.54006 -31.00050 -30.73659 -27.96666 -26.92139 -26.30811 -25.37284 -22.61771 -22.38141 -21.90759 -21.60908 -20.81624 -20.08295 -19.50669 -17.24187 -16.61463 -16.42525 -15.75849 -15.55526 -15.14014 -15.00665 -14.79568 -14.28854 -14.11256 -13.90274 -13.37742 -13.25765 -13.16590 -12.80840 -12.67158 -12.48882 -12.47554 -12.33220 -11.99900 -11.62166 -11.32757 -11.12892 -11.04578 -10.99573 -10.90391 -10.81968 -10.58858 -10.28951 -10.06837 -9.82846 -9.61956 -9.54865 -9.42620 -8.85291 -8.79837 -8.75597 -8.59123 -7.44113 -6.22303 -4.26534 1.27214 1.48918 2.35083 2.85784 3.20221 3.28958 3.32447 3.45837 3.88611 4.22538 4.29552 4.57025 4.72297 4.74313 4.78878 4.95609 5.02953 5.13490 5.19106 5.25540 5.28415 5.40984 5.47930 5.50581 5.55247 5.66709 5.70029 5.75991 5.88424 5.92490 6.00184 6.01004 6.14303 6.15808 6.28460 6.35187 6.43460 6.46335 6.54938 6.56651 6.61503 6.74446 6.78915 6.93175 7.03912 7.06291 7.23072 7.60781 7.76082 7.89656 8.27335 8.80842 9.37882 9.39940 10.88002 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005402 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.171199 B = 5181.747332 C = 6028.489616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.151 3.849 3 N -0.291 5.291 4 N -0.331 5.331 5 C 0.388 3.612 6 N -0.454 5.454 7 C 0.199 3.801 8 C -0.514 4.514 9 H 0.070 0.930 10 C 0.061 3.939 11 N -0.893 5.893 12 Si 0.900 3.100 13 H -0.270 1.270 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.109 3.891 17 C -0.137 4.137 18 C -0.161 4.161 19 C -0.186 4.186 20 N -0.471 5.471 21 C 0.149 3.851 22 C -0.107 4.107 23 C -0.105 4.105 24 C -0.131 4.131 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.079 4.079 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.009 0.991 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 0.894 -11.289 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 N -0.131 5.131 4 N -0.176 5.176 5 C 0.032 3.968 6 N -0.178 5.178 7 C 0.076 3.924 8 C -0.552 4.552 9 H 0.088 0.912 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.727 3.273 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.019 4.019 17 C -0.156 4.156 18 C -0.198 4.198 19 C -0.224 4.224 20 N -0.166 5.166 21 C 0.027 3.973 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.149 4.149 25 C -0.134 4.134 26 C -0.142 4.142 27 C -0.097 4.097 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.094 1.891 -11.396 14.702 hybrid contribution 0.265 -1.766 0.502 1.855 sum -8.830 0.125 -10.894 14.023 Atomic orbital electron populations 1.20089 0.84764 1.03659 1.03240 1.24473 0.96140 0.82812 1.08212 1.73843 0.96938 1.24234 1.18098 1.74595 1.11189 1.07537 1.24267 1.22928 0.85390 0.89116 0.99369 1.59012 0.98037 1.27300 1.33482 1.19937 0.97724 0.93883 0.80873 1.21068 1.26664 1.12502 0.95015 0.91233 1.24971 0.96400 0.97829 0.94974 1.69963 1.43963 1.39959 0.99294 0.86406 0.80626 0.81813 0.78436 1.19439 1.20910 1.20949 1.21541 0.92187 0.95567 0.92562 1.22193 1.01725 0.94447 0.97241 1.22856 0.98719 0.95401 1.02825 1.22930 0.92868 1.05917 1.00649 1.46106 1.05991 1.07461 1.57012 1.20761 1.03005 0.79029 0.94538 1.19936 0.94104 1.00949 0.95827 1.21029 0.96897 0.99473 0.94937 1.21026 0.98436 1.00455 0.94959 1.21171 0.93048 0.99493 0.99656 1.21205 0.97724 1.00230 0.95060 1.21466 0.99101 0.94587 0.94554 0.90324 0.89324 0.91133 0.97272 0.95252 0.92638 0.88653 0.93265 0.88386 0.90168 0.88459 0.89051 0.89560 0.86416 0.88792 0.86357 0.86305 0.86396 0.85983 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.07 36.00 0.36 -0.29 16 2 C 0.15 2.55 8.07 -154.02 -1.24 1.31 16 3 N -0.29 -5.82 12.18 32.99 0.40 -5.42 16 4 N -0.33 -7.03 10.16 30.31 0.31 -6.72 16 5 C 0.39 7.88 6.26 -318.89 -2.00 5.88 16 6 N -0.45 -9.39 4.44 -175.88 -0.78 -10.17 16 7 C 0.20 4.81 4.44 -4.98 -0.02 4.78 16 8 C -0.51 -13.01 8.57 -34.44 -0.30 -13.31 16 9 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 11 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 12 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.11 2.12 4.77 -3.82 -0.02 2.10 16 17 C -0.14 -2.35 5.05 -90.62 -0.46 -2.81 16 18 C -0.16 -2.59 9.43 -26.73 -0.25 -2.84 16 19 C -0.19 -2.69 10.25 -26.73 -0.27 -2.96 16 20 N -0.47 -8.30 2.79 -115.38 -0.32 -8.62 16 21 C 0.15 2.27 5.89 -5.20 -0.03 2.24 16 22 C -0.11 -1.53 5.46 -104.63 -0.57 -2.10 16 23 C -0.10 -1.25 9.60 -39.58 -0.38 -1.63 16 24 C -0.13 -1.45 10.05 -39.59 -0.40 -1.85 16 25 C -0.12 -1.33 10.05 -39.59 -0.40 -1.72 16 26 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 27 C -0.08 -1.20 9.72 -39.58 -0.38 -1.58 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.65 6.48 -51.93 -0.34 0.31 16 31 H 0.01 0.25 8.00 -51.93 -0.42 -0.16 16 32 H 0.03 0.75 6.21 -51.92 -0.32 0.42 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.10 1.90 7.41 -51.93 -0.38 1.52 16 35 H 0.05 1.01 7.45 -51.93 -0.39 0.63 16 36 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.10 1.67 8.03 -51.93 -0.42 1.25 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.12 2.07 6.29 -51.93 -0.33 1.74 16 42 H 0.09 1.14 7.66 -51.93 -0.40 0.74 16 43 H 0.12 1.13 6.78 -52.49 -0.36 0.78 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 47 H 0.14 2.49 8.04 -52.49 -0.42 2.07 16 LS Contribution 388.34 15.07 5.85 5.85 Total: -1.00 -29.97 388.34 -12.79 -42.76 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.11 Total: 6.55 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -6.85 Total: -15.33 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.34 Total: -55.03 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.97 -12.79 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582274651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.986 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds