Wall clock time and date at job start Tue Mar 31 2020 15:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30286 * 126.34658 * 2 1 4 4 N 1.28537 * 110.05355 * 179.76446 * 3 2 1 5 5 C 1.31218 * 109.85766 * 0.45080 * 4 3 2 6 6 N 1.38570 * 126.47297 * 179.82532 * 5 4 3 7 7 C 1.46899 * 111.00348 * 107.64778 * 6 5 4 8 8 C 1.50698 * 109.47393 * 160.30307 * 7 6 5 9 9 H 1.07997 * 119.99844 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00172 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99859 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00067 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46871 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47058 * 120.00041 * 12 10 8 15 15 H 1.48495 * 109.46778 * 239.99551 * 12 10 8 16 16 C 1.46900 * 111.00025 * 343.69377 * 6 5 4 17 17 C 1.52998 * 109.47102 * 293.95551 * 16 6 5 18 18 C 1.53007 * 117.51707 * 116.28281 * 17 16 6 19 19 C 1.52996 * 59.99809 * 107.48102 * 18 17 16 20 20 N 1.36453 * 107.05338 * 359.56200 * 5 4 3 21 21 C 1.46497 * 127.13792 * 180.28158 * 20 5 4 22 22 C 1.50690 * 109.47405 * 272.32770 * 21 20 5 23 23 C 1.38238 * 120.00427 * 264.29905 * 22 21 20 24 24 C 1.38236 * 119.99960 * 179.76542 * 23 22 21 25 25 C 1.38227 * 120.00065 * 0.50089 * 24 23 22 26 26 C 1.38237 * 120.00146 * 359.75507 * 25 24 23 27 27 C 1.38228 * 119.99980 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47563 * 269.95557 * 1 2 3 29 29 H 1.09001 * 109.47406 * 29.95479 * 1 2 3 30 30 H 1.09000 * 109.47403 * 149.95505 * 1 2 3 31 31 H 1.08999 * 109.47385 * 280.30786 * 7 6 5 32 32 H 1.09009 * 109.46965 * 40.30343 * 7 6 5 33 33 H 0.96998 * 120.00077 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47384 * 173.95062 * 16 6 5 35 35 H 1.09002 * 109.47087 * 53.95341 * 16 6 5 36 36 H 1.09000 * 115.55259 * 330.58076 * 17 16 6 37 37 H 1.09003 * 117.49666 * 214.96869 * 18 17 16 38 38 H 1.08996 * 117.50059 * 359.97438 * 18 17 16 39 39 H 1.09003 * 117.49930 * 252.50712 * 19 18 17 40 40 H 1.09004 * 117.50169 * 107.49252 * 19 18 17 41 41 H 1.09000 * 109.46994 * 32.32806 * 21 20 5 42 42 H 1.09006 * 109.47340 * 152.32373 * 21 20 5 43 43 H 1.08001 * 119.99732 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.99546 * 180.22865 * 24 23 22 45 45 H 1.07998 * 119.99747 * 179.72255 * 25 24 23 46 46 H 1.08001 * 119.99759 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.00316 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0494 0.0000 4 7 3.5129 0.6888 0.0050 5 6 3.5945 -0.6208 -0.0013 6 7 4.7579 -1.3737 -0.0021 7 6 4.9708 -2.0152 1.3021 8 6 5.9246 -3.1711 1.1437 9 1 6.3315 -3.4060 0.1713 10 6 6.2769 -3.9295 2.2399 11 7 5.7809 -3.6438 3.4240 12 14 7.4597 -5.3619 2.0436 13 1 7.8714 -5.4725 0.6211 14 1 8.6583 -5.1337 2.8901 15 1 6.7892 -6.6186 2.4636 16 6 5.9159 -0.5527 -0.3803 17 6 5.7705 -0.1057 -1.8363 18 6 5.6367 1.3946 -2.1051 19 6 6.9356 0.6670 -2.4577 20 7 2.3174 -1.1014 -0.0008 21 6 1.9009 -2.5059 -0.0007 22 6 1.8128 -3.0039 -1.4202 23 6 0.5979 -3.0010 -2.0797 24 6 0.5181 -3.4533 -3.3836 25 6 1.6512 -3.9182 -4.0244 26 6 2.8652 -3.9261 -3.3631 27 6 2.9461 -3.4686 -2.0613 28 1 -0.3634 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5145 31 1 5.3910 -1.2904 1.9993 32 1 4.0186 -2.3800 1.6874 33 1 6.0290 -4.1770 4.1953 34 1 6.8284 -1.1385 -0.2694 35 1 5.9663 0.3239 0.2656 36 1 5.2148 -0.7845 -2.4832 37 1 4.9929 1.7027 -2.9290 38 1 5.6517 2.0634 -1.2447 39 1 7.8056 0.8573 -1.8292 40 1 7.1465 0.4966 -3.5135 41 1 2.6303 -3.1011 0.5485 42 1 0.9252 -2.5956 0.4770 43 1 -0.2883 -2.6421 -1.5774 44 1 -0.4304 -3.4475 -3.9000 45 1 1.5880 -4.2757 -5.0415 46 1 3.7504 -4.2897 -3.8638 47 1 3.8944 -3.4751 -1.5445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582274651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:24 Heat of formation + Delta-G solvation = 124.389656 kcal Electronic energy + Delta-G solvation = -28728.356372 eV Core-core repulsion = 25105.927344 eV Total energy + Delta-G solvation = -3622.429029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.86749 -40.13069 -39.33403 -37.18473 -36.15346 -34.76081 -32.74354 -32.15450 -31.74452 -29.78000 -28.29675 -27.49279 -27.08158 -24.27989 -23.50240 -23.17205 -22.77663 -22.27067 -21.39457 -20.97905 -18.84139 -18.14701 -17.76816 -17.25652 -16.87589 -16.66001 -16.14110 -16.03429 -15.83181 -15.51071 -15.34295 -14.66600 -14.40784 -14.33587 -14.27205 -13.88798 -13.80730 -13.65293 -13.52939 -13.33519 -13.13855 -12.88520 -12.70199 -12.51516 -12.33858 -12.27432 -12.22849 -12.13850 -11.84463 -11.70601 -11.34492 -11.16673 -10.99013 -10.85446 -10.65532 -10.34947 -9.81197 -9.76921 -9.07627 -8.27363 -6.38564 0.26549 0.52100 0.91539 1.40277 1.41990 1.51823 1.55920 1.93639 2.36602 2.79609 2.94947 3.05455 3.10638 3.56535 3.62037 3.69360 3.82703 4.03043 4.06739 4.10236 4.16433 4.19145 4.30054 4.38598 4.40671 4.44777 4.61523 4.64527 4.70271 4.72726 4.79073 4.80492 4.95303 4.96934 4.99560 5.03776 5.06130 5.10985 5.11536 5.20907 5.29906 5.34214 5.53758 5.58502 5.63596 5.69529 5.81686 5.95556 5.97928 6.11095 6.54549 6.74501 7.31646 7.88364 8.84115 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005402 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.171199 B = 5181.747332 C = 6028.489616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.170 3.830 3 N -0.330 5.330 4 N -0.351 5.351 5 C 0.364 3.636 6 N -0.446 5.446 7 C 0.221 3.779 8 C -0.517 4.517 9 H 0.070 0.930 10 C 0.012 3.988 11 N -0.931 5.931 12 Si 0.968 3.032 13 H -0.260 1.260 14 H -0.281 1.281 15 H -0.278 1.278 16 C 0.114 3.886 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.157 4.157 20 N -0.470 5.470 21 C 0.150 3.850 22 C -0.122 4.122 23 C -0.102 4.102 24 C -0.126 4.126 25 C -0.113 4.113 26 C -0.136 4.136 27 C -0.106 4.106 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.099 0.901 31 H -0.033 1.033 32 H 0.011 0.989 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.129 0.871 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 0.040 -13.771 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.099 4.099 3 N -0.170 5.170 4 N -0.195 5.195 5 C 0.006 3.994 6 N -0.169 5.169 7 C 0.096 3.904 8 C -0.555 4.555 9 H 0.088 0.912 10 C -0.187 4.187 11 N -0.571 5.571 12 Si 0.792 3.208 13 H -0.184 1.184 14 H -0.207 1.207 15 H -0.204 1.204 16 C -0.013 4.013 17 C -0.168 4.168 18 C -0.196 4.196 19 C -0.195 4.195 20 N -0.164 5.164 21 C 0.028 3.972 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.144 4.144 25 C -0.131 4.131 26 C -0.154 4.154 27 C -0.125 4.125 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.117 0.883 31 H -0.015 1.015 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.147 0.853 43 H 0.167 0.833 44 H 0.172 0.828 45 H 0.165 0.835 46 H 0.147 0.853 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.207 1.046 -13.901 17.887 hybrid contribution 0.793 -1.459 1.252 2.080 sum -10.414 -0.414 -12.649 16.389 Atomic orbital electron populations 1.20430 0.80331 1.05827 1.05186 1.25609 0.98245 0.81598 1.04413 1.73783 0.96809 1.25735 1.20682 1.74492 1.12453 1.08132 1.24455 1.22901 0.86125 0.89192 1.01147 1.58944 0.98896 1.27929 1.31178 1.19496 0.96217 0.92781 0.81857 1.21265 1.26571 1.12641 0.95057 0.91156 1.25822 0.97973 1.00436 0.94503 1.70087 1.45495 1.41339 1.00154 0.85346 0.78255 0.78391 0.78761 1.18411 1.20666 1.20372 1.21458 0.91440 0.94306 0.94106 1.21965 1.04442 0.95009 0.95414 1.22767 1.00262 0.94049 1.02480 1.23048 0.91969 1.02502 1.01932 1.46362 1.05168 1.08730 1.56138 1.20861 1.03422 0.77239 0.95658 1.19884 0.95051 1.02078 0.95267 1.21349 0.96595 0.98678 0.95410 1.21480 0.99673 0.98684 0.94555 1.21541 0.92281 0.98424 1.00823 1.21354 0.99220 1.00445 0.94349 1.21317 0.98302 0.97052 0.95815 0.88338 0.87787 0.88275 1.01495 0.97058 0.92487 0.89773 0.95234 0.89308 0.89516 0.89969 0.88252 0.87015 0.89925 0.85265 0.83293 0.82791 0.83518 0.85346 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.13 10.07 71.24 0.72 -0.41 16 2 C 0.17 5.58 8.07 137.64 1.11 6.69 16 3 N -0.33 -13.40 12.18 -49.54 -0.60 -14.00 16 4 N -0.35 -15.59 10.16 -58.01 -0.59 -16.18 16 5 C 0.36 15.60 6.26 260.12 1.63 17.23 16 6 N -0.45 -19.86 4.44 -710.37 -3.16 -23.02 16 7 C 0.22 11.55 4.44 85.56 0.38 11.93 16 8 C -0.52 -27.63 8.57 25.60 0.22 -27.41 16 9 H 0.07 3.68 7.78 -2.91 -0.02 3.65 16 10 C 0.01 0.64 5.46 84.65 0.46 1.10 16 11 N -0.93 -53.87 13.29 21.45 0.28 -53.59 16 12 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 13 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 16 C 0.11 4.77 4.77 86.30 0.41 5.19 16 17 C -0.15 -5.30 5.05 -10.79 -0.05 -5.35 16 18 C -0.16 -5.15 9.43 30.60 0.29 -4.86 16 19 C -0.16 -4.41 10.25 30.59 0.31 -4.10 16 20 N -0.47 -16.87 2.79 -518.94 -1.45 -18.31 16 21 C 0.15 4.59 5.89 85.63 0.50 5.09 16 22 C -0.12 -3.41 5.46 -19.87 -0.11 -3.51 16 23 C -0.10 -2.10 9.60 22.27 0.21 -1.89 16 24 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 25 C -0.11 -2.25 10.05 22.27 0.22 -2.03 16 26 C -0.14 -3.48 10.05 22.27 0.22 -3.26 16 27 C -0.11 -3.34 9.72 22.27 0.22 -3.12 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 1.34 6.48 -2.39 -0.02 1.33 16 31 H -0.03 -1.94 8.00 -2.39 -0.02 -1.96 16 32 H 0.01 0.63 6.21 -2.38 -0.01 0.61 16 33 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.08 3.61 7.41 -2.39 -0.02 3.59 16 35 H 0.03 1.32 7.45 -2.39 -0.02 1.31 16 36 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.08 2.93 8.03 -2.39 -0.02 2.91 16 39 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.08 3.12 6.29 -2.39 -0.02 3.11 16 42 H 0.13 2.91 7.66 -2.38 -0.02 2.90 16 43 H 0.15 2.08 6.78 -2.91 -0.02 2.06 16 44 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 46 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 47 H 0.11 4.08 8.04 -2.91 -0.02 4.06 16 Total: -1.00 -70.29 388.34 4.45 -65.84 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.96 Total: 25.68 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 6.97 Total: -10.76 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -5.51 Total: -125.11 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -70.29 4.45 -65.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582274651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.229 kcal (2) G-P(sol) polarization free energy of solvation -70.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds