Wall clock time and date at job start Tue Mar 31 2020 14:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00233 * 2 1 4 4 H 1.48500 * 109.47088 * 239.99476 * 3 2 1 5 5 H 1.48504 * 109.46861 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47041 * 119.99580 * 3 2 1 7 7 C 1.37877 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00466 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46872 * 179.97438 * 9 7 2 11 11 C 1.53127 * 109.52065 * 174.99994 * 10 9 7 12 12 C 1.53036 * 109.27694 * 177.56214 * 11 10 9 13 13 N 1.46849 * 109.52044 * 300.82150 * 12 11 10 14 14 C 1.46905 * 110.99723 * 185.84269 * 13 12 11 15 15 C 1.50699 * 109.47159 * 164.78693 * 14 13 12 16 16 N 1.30851 * 125.98887 * 96.08270 * 15 14 13 17 17 C 1.33258 * 109.84442 * 179.97438 * 16 15 14 18 18 N 1.30747 * 108.99869 * 359.97438 * 17 16 15 19 19 N 1.34730 * 125.97807 * 276.03801 * 15 14 13 20 20 C 1.40198 * 126.84378 * 359.77997 * 19 15 14 21 21 C 1.38840 * 120.06218 * 315.89000 * 20 19 15 22 22 C 1.38118 * 119.93018 * 179.74866 * 21 20 19 23 23 C 1.38281 * 120.06557 * 0.53569 * 22 21 20 24 24 C 1.38278 * 120.13143 * 359.74015 * 23 22 21 25 25 C 1.38112 * 120.07149 * 359.97438 * 24 23 22 26 26 C 1.46840 * 111.19968 * 61.74437 * 13 12 11 27 27 C 1.53041 * 109.52474 * 298.25564 * 26 13 12 28 28 H 0.97000 * 119.99800 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47083 * 59.99891 * 9 7 2 30 30 H 1.08997 * 109.47431 * 300.00006 * 9 7 2 31 31 H 1.09000 * 109.52131 * 54.87688 * 10 9 7 32 32 H 1.08996 * 109.50008 * 57.61801 * 11 10 9 33 33 H 1.08999 * 109.53236 * 297.51771 * 11 10 9 34 34 H 1.08997 * 109.45913 * 180.80817 * 12 11 10 35 35 H 1.08996 * 109.45517 * 60.82791 * 12 11 10 36 36 H 1.09000 * 109.47047 * 44.78026 * 14 13 12 37 37 H 1.09001 * 109.46982 * 284.78474 * 14 13 12 38 38 H 1.08002 * 125.49645 * 180.02562 * 17 16 15 39 39 H 1.08000 * 120.03370 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.96558 * 180.29580 * 22 21 20 41 41 H 1.07998 * 119.93542 * 179.76945 * 23 22 21 42 42 H 1.08010 * 119.96558 * 180.02562 * 24 23 22 43 43 H 1.07994 * 120.03886 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46225 * 58.27220 * 26 13 12 45 45 H 1.09008 * 109.46169 * 178.24187 * 26 13 12 46 46 H 1.09001 * 109.50169 * 299.24245 * 27 26 13 47 47 H 1.08999 * 109.53430 * 179.14367 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4849 -4.9853 0.1263 12 6 2.4791 -6.1471 0.0646 13 7 3.2096 -6.1007 -1.2085 14 6 4.0736 -7.2787 -1.3629 15 6 4.5111 -7.3959 -2.8002 16 7 5.6378 -6.9557 -3.2993 17 6 5.6935 -7.2307 -4.6020 18 7 4.5985 -7.8532 -4.9528 19 7 3.8110 -7.9730 -3.7961 20 6 2.5502 -8.5780 -3.6965 21 6 2.2688 -9.4287 -2.6359 22 6 1.0241 -10.0192 -2.5376 23 6 0.0623 -9.7725 -3.5001 24 6 0.3416 -8.9302 -4.5606 25 6 1.5825 -8.3322 -4.6612 26 6 3.9850 -4.8597 -1.3308 27 6 3.0358 -3.6594 -1.3107 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 2.9312 -3.5548 0.8408 32 1 0.7705 -5.0737 -0.6921 33 1 0.9535 -5.0113 1.0777 34 1 1.9395 -7.0911 0.1395 35 1 3.1847 -6.0654 0.8913 36 1 3.5216 -8.1741 -1.0769 37 1 4.9502 -7.1727 -0.7238 38 1 6.5115 -6.9805 -5.2613 39 1 3.0210 -9.6249 -1.8862 40 1 0.8030 -10.6772 -1.7103 41 1 -0.9090 -10.2383 -3.4231 42 1 -0.4117 -8.7392 -5.3106 43 1 1.7999 -7.6742 -5.4894 44 1 4.6835 -4.7843 -0.4975 45 1 4.5392 -4.8688 -2.2695 46 1 2.3458 -3.7270 -2.1518 47 1 3.6124 -2.7375 -1.3862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582299006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:27 Heat of formation + Delta-G solvation = 115.328278 kcal Electronic energy + Delta-G solvation = -27680.683083 eV Core-core repulsion = 24057.861123 eV Total energy + Delta-G solvation = -3622.821959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.47215 -39.37778 -38.76815 -34.93603 -34.23910 -32.63342 -31.55867 -31.17231 -30.37106 -29.68937 -28.39651 -26.06477 -23.94940 -23.55268 -22.95949 -22.63882 -21.58991 -20.79142 -20.41448 -18.93504 -18.12727 -16.78432 -16.45896 -16.18984 -15.68750 -15.23447 -14.88581 -14.79205 -14.61070 -14.44412 -14.29154 -13.82687 -13.52672 -13.32250 -13.23728 -13.00169 -12.47280 -12.27751 -12.22465 -11.95608 -11.79945 -11.62185 -11.45209 -11.10229 -10.83046 -10.67030 -10.58879 -10.58022 -10.27824 -10.19440 -9.98529 -9.78554 -9.53034 -9.31663 -9.05327 -8.88162 -8.78379 -8.31472 -8.26221 -5.95650 -3.97031 0.61919 1.02088 1.61953 2.06158 2.74035 3.35513 3.38337 3.39899 3.42484 3.77141 4.17559 4.41069 4.48465 4.49244 4.58402 4.62109 4.79738 5.03372 5.10078 5.10706 5.23688 5.32729 5.36541 5.39676 5.43020 5.57405 5.64096 5.72140 5.83360 5.90536 5.97829 5.98607 6.12029 6.14538 6.19794 6.23202 6.27307 6.39544 6.43099 6.53742 6.64639 6.85411 6.95959 7.05988 7.18182 7.21339 7.28714 7.71730 7.88222 7.92145 8.04860 8.48121 9.09304 9.66431 11.15665 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.003118 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.952574 B = 8979.352677 C = 9761.212891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.082 4.082 11 C -0.110 4.110 12 C 0.062 3.938 13 N -0.530 5.530 14 C 0.121 3.879 15 C 0.308 3.692 16 N -0.535 5.535 17 C 0.203 3.797 18 N -0.318 5.318 19 N -0.324 5.324 20 C 0.154 3.846 21 C -0.120 4.120 22 C -0.100 4.100 23 C -0.115 4.115 24 C -0.101 4.101 25 C -0.098 4.098 26 C 0.055 3.945 27 C -0.098 4.098 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.221 0.779 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 -22.909 -5.784 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.100 4.100 11 C -0.148 4.148 12 C -0.065 4.065 13 N -0.256 5.256 14 C -0.010 4.010 15 C 0.032 3.968 16 N -0.262 5.262 17 C -0.099 4.099 18 N -0.143 5.143 19 N -0.109 5.109 20 C 0.063 3.937 21 C -0.141 4.141 22 C -0.119 4.119 23 C -0.133 4.133 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.072 4.072 27 C -0.135 4.135 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.237 0.763 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.850 -22.864 -6.725 24.141 hybrid contribution 1.030 1.100 0.591 1.619 sum 4.881 -21.764 -6.134 23.133 Atomic orbital electron populations 1.69952 1.06022 1.26550 1.51086 1.25006 0.94788 0.99098 0.95513 0.86724 0.79637 0.83446 0.78589 1.20282 1.21367 1.20314 1.21222 0.92903 0.91047 1.50169 0.92750 1.19102 0.93585 0.91040 0.97063 1.21248 0.97913 0.94735 0.96134 1.21682 0.97406 0.94096 1.01620 1.22133 0.96269 0.99806 0.88293 1.61894 1.27254 1.01022 1.35470 1.20716 0.97740 0.96510 0.85987 1.24375 0.87357 0.91466 0.93627 1.70569 1.19870 1.26131 1.09670 1.26055 0.96469 0.95524 0.91859 1.78160 1.05513 1.24999 1.05634 1.47463 1.14135 1.42677 1.06595 1.17369 0.82035 0.96381 0.97912 1.21013 0.98524 0.96639 0.97884 1.20990 0.92318 0.99391 0.99178 1.21283 0.99613 0.98183 0.94253 1.21097 0.95963 0.96445 0.98493 1.21046 0.92308 0.99721 0.98751 1.22295 0.95184 0.89150 1.00614 1.21533 0.97754 0.95504 0.98743 0.93061 0.96612 0.96752 0.92878 0.91625 0.91844 0.91426 0.94771 0.88513 0.90767 0.76322 0.85394 0.84909 0.85265 0.84972 0.85117 0.94801 0.91135 0.92166 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.42 8.44 -34.44 -0.29 -14.72 16 8 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 9 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 10 C -0.08 -1.65 2.20 -90.49 -0.20 -1.85 16 11 C -0.11 -1.84 5.38 -26.65 -0.14 -1.98 16 12 C 0.06 0.84 5.45 -3.83 -0.02 0.82 16 13 N -0.53 -7.54 4.61 -236.11 -1.09 -8.62 16 14 C 0.12 1.44 5.13 -4.97 -0.03 1.41 16 15 C 0.31 4.18 6.50 -155.41 -1.01 3.17 16 16 N -0.54 -7.60 10.73 -11.89 -0.13 -7.73 16 17 C 0.20 2.56 13.03 -91.77 -1.20 1.37 16 18 N -0.32 -4.43 12.58 29.30 0.37 -4.06 16 19 N -0.32 -4.41 3.70 -8.02 -0.03 -4.44 16 20 C 0.15 1.86 6.20 -83.59 -0.52 1.34 16 21 C -0.12 -1.15 8.59 -39.40 -0.34 -1.49 16 22 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 23 C -0.11 -0.89 10.04 -39.55 -0.40 -1.28 16 24 C -0.10 -0.90 10.04 -39.61 -0.40 -1.30 16 25 C -0.10 -1.11 9.89 -39.41 -0.39 -1.50 16 26 C 0.05 0.89 5.30 -3.84 -0.02 0.87 16 27 C -0.10 -1.88 5.15 -26.65 -0.14 -2.02 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.92 4.93 -51.93 -0.26 0.67 16 37 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.22 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.13 1.04 6.25 -52.49 -0.33 0.71 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 1.19 6.94 -51.92 -0.36 0.83 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.07 1.54 7.05 -51.93 -0.37 1.17 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -32.99 379.09 -12.30 -45.29 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.15 Total: -0.44 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -5.70 Total: -16.19 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.14 Total: -51.16 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.99 -12.30 -45.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582299006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.622 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds