Wall clock time and date at job start Tue Mar 31 2020 14:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00233 * 2 1 4 4 H 1.48500 * 109.47088 * 239.99476 * 3 2 1 5 5 H 1.48504 * 109.46861 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47041 * 119.99580 * 3 2 1 7 7 C 1.37877 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00466 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46872 * 179.97438 * 9 7 2 11 11 C 1.53127 * 109.52065 * 174.99994 * 10 9 7 12 12 C 1.53036 * 109.27694 * 177.56214 * 11 10 9 13 13 N 1.46849 * 109.52044 * 300.82150 * 12 11 10 14 14 C 1.46905 * 110.99723 * 185.84269 * 13 12 11 15 15 C 1.50699 * 109.47159 * 164.78693 * 14 13 12 16 16 N 1.30851 * 125.98887 * 96.08270 * 15 14 13 17 17 C 1.33258 * 109.84442 * 179.97438 * 16 15 14 18 18 N 1.30747 * 108.99869 * 359.97438 * 17 16 15 19 19 N 1.34730 * 125.97807 * 276.03801 * 15 14 13 20 20 C 1.40198 * 126.84378 * 359.77997 * 19 15 14 21 21 C 1.38840 * 120.06218 * 315.89000 * 20 19 15 22 22 C 1.38118 * 119.93018 * 179.74866 * 21 20 19 23 23 C 1.38281 * 120.06557 * 0.53569 * 22 21 20 24 24 C 1.38278 * 120.13143 * 359.74015 * 23 22 21 25 25 C 1.38112 * 120.07149 * 359.97438 * 24 23 22 26 26 C 1.46840 * 111.19968 * 61.74437 * 13 12 11 27 27 C 1.53041 * 109.52474 * 298.25564 * 26 13 12 28 28 H 0.97000 * 119.99800 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47083 * 59.99891 * 9 7 2 30 30 H 1.08997 * 109.47431 * 300.00006 * 9 7 2 31 31 H 1.09000 * 109.52131 * 54.87688 * 10 9 7 32 32 H 1.08996 * 109.50008 * 57.61801 * 11 10 9 33 33 H 1.08999 * 109.53236 * 297.51771 * 11 10 9 34 34 H 1.08997 * 109.45913 * 180.80817 * 12 11 10 35 35 H 1.08996 * 109.45517 * 60.82791 * 12 11 10 36 36 H 1.09000 * 109.47047 * 44.78026 * 14 13 12 37 37 H 1.09001 * 109.46982 * 284.78474 * 14 13 12 38 38 H 1.08002 * 125.49645 * 180.02562 * 17 16 15 39 39 H 1.08000 * 120.03370 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.96558 * 180.29580 * 22 21 20 41 41 H 1.07998 * 119.93542 * 179.76945 * 23 22 21 42 42 H 1.08010 * 119.96558 * 180.02562 * 24 23 22 43 43 H 1.07994 * 120.03886 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46225 * 58.27220 * 26 13 12 45 45 H 1.09008 * 109.46169 * 178.24187 * 26 13 12 46 46 H 1.09001 * 109.50169 * 299.24245 * 27 26 13 47 47 H 1.08999 * 109.53430 * 179.14367 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4849 -4.9853 0.1263 12 6 2.4791 -6.1471 0.0646 13 7 3.2096 -6.1007 -1.2085 14 6 4.0736 -7.2787 -1.3629 15 6 4.5111 -7.3959 -2.8002 16 7 5.6378 -6.9557 -3.2993 17 6 5.6935 -7.2307 -4.6020 18 7 4.5985 -7.8532 -4.9528 19 7 3.8110 -7.9730 -3.7961 20 6 2.5502 -8.5780 -3.6965 21 6 2.2688 -9.4287 -2.6359 22 6 1.0241 -10.0192 -2.5376 23 6 0.0623 -9.7725 -3.5001 24 6 0.3416 -8.9302 -4.5606 25 6 1.5825 -8.3322 -4.6612 26 6 3.9850 -4.8597 -1.3308 27 6 3.0358 -3.6594 -1.3107 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 2.9312 -3.5548 0.8408 32 1 0.7705 -5.0737 -0.6921 33 1 0.9535 -5.0113 1.0777 34 1 1.9395 -7.0911 0.1395 35 1 3.1847 -6.0654 0.8913 36 1 3.5216 -8.1741 -1.0769 37 1 4.9502 -7.1727 -0.7238 38 1 6.5115 -6.9805 -5.2613 39 1 3.0210 -9.6249 -1.8862 40 1 0.8030 -10.6772 -1.7103 41 1 -0.9090 -10.2383 -3.4231 42 1 -0.4117 -8.7392 -5.3106 43 1 1.7999 -7.6742 -5.4894 44 1 4.6835 -4.7843 -0.4975 45 1 4.5392 -4.8688 -2.2695 46 1 2.3458 -3.7270 -2.1518 47 1 3.6124 -2.7375 -1.3862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582299006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:26 Heat of formation + Delta-G solvation = 97.614465 kcal Electronic energy + Delta-G solvation = -27681.451211 eV Core-core repulsion = 24057.861123 eV Total energy + Delta-G solvation = -3623.590088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.41473 -40.11138 -40.03876 -36.44481 -35.14355 -34.46773 -32.74921 -31.97170 -31.67057 -30.56588 -29.91590 -27.51249 -25.36178 -24.62637 -23.97774 -23.80995 -22.46305 -22.31016 -21.35820 -20.46326 -18.98279 -18.43549 -17.50881 -17.39644 -16.69662 -16.47424 -16.20105 -15.91504 -15.74582 -15.46437 -15.12191 -15.04004 -14.80410 -14.49215 -14.39753 -14.14862 -14.01822 -13.59811 -13.35512 -13.24053 -13.03157 -12.91143 -12.67160 -12.55317 -12.37201 -12.24042 -12.12360 -12.01895 -11.69496 -11.42090 -11.27841 -11.18548 -10.90821 -10.85561 -10.67821 -10.51715 -9.99721 -9.55496 -9.37120 -8.17496 -6.26788 -0.17297 0.34483 0.74484 1.19455 1.38535 1.41131 1.48706 1.76870 2.41272 2.69070 2.80808 3.14309 3.16698 3.63226 3.64954 3.85205 3.90716 3.98260 4.04163 4.09857 4.19036 4.31099 4.35722 4.42348 4.43502 4.53765 4.55846 4.63708 4.64853 4.77604 4.82545 4.94902 4.99016 5.04855 5.08754 5.13855 5.32554 5.37046 5.38332 5.40063 5.40903 5.42958 5.50965 5.57631 5.71165 5.80064 5.87767 5.99558 6.03327 6.11511 6.30311 6.89260 6.95912 7.41459 8.94137 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.003118 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.952574 B = 8979.352677 C = 9761.212891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.035 3.965 10 C -0.074 4.074 11 C -0.105 4.105 12 C 0.070 3.930 13 N -0.541 5.541 14 C 0.126 3.874 15 C 0.297 3.703 16 N -0.557 5.557 17 C 0.200 3.800 18 N -0.345 5.345 19 N -0.325 5.325 20 C 0.122 3.878 21 C -0.124 4.124 22 C -0.094 4.094 23 C -0.111 4.111 24 C -0.107 4.107 25 C -0.123 4.123 26 C 0.071 3.929 27 C -0.090 4.090 28 H 0.262 0.738 29 H -0.017 1.017 30 H -0.010 1.010 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.251 0.749 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.765 -24.926 -4.539 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.092 4.092 11 C -0.143 4.143 12 C -0.057 4.057 13 N -0.267 5.267 14 C -0.004 4.004 15 C 0.021 3.979 16 N -0.285 5.285 17 C -0.102 4.102 18 N -0.171 5.171 19 N -0.110 5.110 20 C 0.031 3.969 21 C -0.144 4.144 22 C -0.112 4.112 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.057 4.057 27 C -0.128 4.128 28 H 0.071 0.929 29 H 0.002 0.998 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.267 0.733 39 H 0.161 0.839 40 H 0.185 0.815 41 H 0.177 0.823 42 H 0.166 0.834 43 H 0.129 0.871 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.379 -24.903 -5.479 25.872 hybrid contribution 0.760 1.687 0.157 1.857 sum 5.139 -23.216 -5.322 24.367 Atomic orbital electron populations 1.70089 1.07711 1.27574 1.52132 1.25918 0.95678 1.03077 0.95083 0.85622 0.78387 0.78692 0.79099 1.19558 1.20909 1.19061 1.21639 0.93338 0.92281 1.49695 0.92338 1.18992 0.93984 0.92992 0.94239 1.21090 0.96919 0.94700 0.96519 1.21582 0.97727 0.93499 1.01459 1.22100 0.95801 0.99543 0.88247 1.61761 1.27761 1.00951 1.36255 1.20838 0.98174 0.96215 0.85166 1.24712 0.87439 0.91417 0.94343 1.70565 1.20672 1.26849 1.10431 1.26717 0.96867 0.94727 0.91923 1.78103 1.06204 1.26017 1.06755 1.47579 1.14549 1.42542 1.06322 1.17763 0.81627 0.98059 0.99435 1.21264 0.99715 0.96080 0.97334 1.21433 0.91272 0.98742 0.99780 1.21700 1.00907 0.97060 0.93265 1.21365 0.95292 0.96332 0.99530 1.21089 0.93715 1.00777 0.98761 1.21993 0.94268 0.88853 1.00575 1.21369 0.97575 0.96503 0.97360 0.92950 0.99842 0.99127 0.92746 0.93124 0.91044 0.87960 0.93322 0.85665 0.89581 0.73307 0.83894 0.81547 0.82300 0.83394 0.87073 0.93876 0.91980 0.94416 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.53 -30.51 8.44 25.60 0.22 -30.29 16 8 H 0.06 3.23 7.08 -2.91 -0.02 3.21 16 9 C 0.03 1.86 4.45 29.85 0.13 2.00 16 10 C -0.07 -3.01 2.20 -10.71 -0.02 -3.03 16 11 C -0.10 -3.40 5.38 30.65 0.16 -3.24 16 12 C 0.07 1.66 5.45 86.32 0.47 2.13 16 13 N -0.54 -14.35 4.61 -900.92 -4.15 -18.50 16 14 C 0.13 2.66 5.13 85.56 0.44 3.10 16 15 C 0.30 7.77 6.50 138.13 0.90 8.67 16 16 N -0.56 -15.51 10.73 -191.52 -2.05 -17.56 16 17 C 0.20 5.00 13.03 180.75 2.35 7.35 16 18 N -0.34 -9.77 12.58 -61.21 -0.77 -10.54 16 19 N -0.33 -8.77 3.70 -179.30 -0.66 -9.43 16 20 C 0.12 2.85 6.20 38.09 0.24 3.09 16 21 C -0.12 -2.05 8.59 22.39 0.19 -1.86 16 22 C -0.09 -1.11 10.04 22.25 0.22 -0.89 16 23 C -0.11 -1.38 10.04 22.29 0.22 -1.15 16 24 C -0.11 -1.77 10.04 22.25 0.22 -1.55 16 25 C -0.12 -2.83 9.89 22.38 0.22 -2.61 16 26 C 0.07 2.24 5.30 86.33 0.46 2.70 16 27 C -0.09 -3.56 5.15 30.65 0.16 -3.40 16 28 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 29 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.10 1.81 7.96 -2.39 -0.02 1.79 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.13 1.90 4.93 -2.39 -0.01 1.89 16 37 H 0.09 1.66 8.07 -2.39 -0.02 1.64 16 38 H 0.25 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.14 1.83 6.25 -2.91 -0.02 1.81 16 40 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 41 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 42 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.11 2.85 8.06 -2.91 -0.02 2.82 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 2.08 6.94 -2.38 -0.02 2.07 16 46 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.05 2.25 7.05 -2.39 -0.02 2.24 16 Total: -1.00 -74.90 379.09 2.68 -72.22 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.96 Total: 12.73 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 7.05 Total: -18.54 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -7.35 Total: -113.58 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -74.90 2.68 -72.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582299006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.834 kcal (2) G-P(sol) polarization free energy of solvation -74.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds