Wall clock time and date at job start Tue Mar 31 2020 14:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48496 * 109.47175 * 240.00593 * 3 2 1 5 5 H 1.48504 * 109.47058 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47035 * 120.00201 * 3 2 1 7 7 C 1.37881 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00085 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47429 * 180.02562 * 9 7 2 11 11 C 1.39669 * 120.00681 * 179.97438 * 10 9 7 12 12 C 1.38905 * 120.07711 * 179.97438 * 11 10 9 13 13 C 1.38102 * 119.92398 * 179.72013 * 12 11 10 14 14 C 1.38284 * 120.07730 * 0.28542 * 13 12 11 15 15 C 1.50702 * 119.92910 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47375 * 89.99517 * 15 14 13 17 17 N 1.30686 * 126.42982 * 90.02434 * 16 15 14 18 18 N 1.28745 * 109.69661 * 179.64577 * 17 16 15 19 19 C 1.30254 * 109.54175 * 359.82349 * 18 17 16 20 20 N 1.35135 * 126.42963 * 269.72008 * 16 15 14 21 21 C 1.46325 * 127.21964 * 2.00164 * 20 16 15 22 22 C 1.53125 * 109.26860 * 206.98470 * 21 20 16 23 23 C 1.52793 * 109.72143 * 270.56197 * 22 21 20 24 24 C 1.52565 * 110.50972 * 61.41091 * 23 22 21 25 25 C 1.50674 * 127.18356 * 180.87796 * 19 18 17 26 26 C 1.38288 * 120.14784 * 0.02562 * 14 13 12 27 27 C 1.38104 * 120.07422 * 359.96444 * 26 14 13 28 28 H 0.97000 * 120.00169 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47512 * 59.99583 * 9 7 2 30 30 H 1.09006 * 109.47026 * 299.99617 * 9 7 2 31 31 H 0.97008 * 119.99236 * 359.97438 * 10 9 7 32 32 H 1.08002 * 120.04044 * 0.02562 * 12 11 10 33 33 H 1.08000 * 119.96256 * 180.29943 * 13 12 11 34 34 H 1.08998 * 109.46900 * 209.99776 * 15 14 13 35 35 H 1.09005 * 109.46585 * 329.99345 * 15 14 13 36 36 H 1.08998 * 109.71862 * 86.94473 * 21 20 16 37 37 H 1.09004 * 109.38711 * 326.82617 * 21 20 16 38 38 H 1.08997 * 109.43046 * 150.47954 * 22 21 20 39 39 H 1.09001 * 109.38672 * 30.61084 * 22 21 20 40 40 H 1.09004 * 109.26711 * 301.15296 * 23 22 21 41 41 H 1.08994 * 109.27391 * 181.68094 * 23 22 21 42 42 H 1.09001 * 109.45889 * 273.40140 * 24 23 22 43 43 H 1.08998 * 109.45139 * 153.46202 * 24 23 22 44 44 H 1.08993 * 109.53965 * 346.68470 * 25 19 18 45 45 H 1.08996 * 109.53740 * 106.84772 * 25 19 18 46 46 H 1.08007 * 119.96217 * 179.97438 * 26 14 13 47 47 H 1.07997 * 120.03623 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7374 -4.9296 0.0000 12 6 2.6387 -5.9865 -0.0005 13 6 2.1750 -7.2873 0.0059 14 6 0.8151 -7.5383 0.0068 15 6 0.3127 -8.9591 0.0132 16 6 0.1452 -9.4263 1.4361 17 7 -0.9326 -9.3168 2.1671 18 7 -0.7225 -9.8292 3.3294 19 6 0.4943 -10.2901 3.3889 20 7 1.0793 -10.0423 2.1938 21 6 2.4592 -10.3526 1.8187 22 6 2.9371 -11.5710 2.6136 23 6 3.5640 -11.1143 3.9300 24 6 2.5365 -10.3779 4.7842 25 6 1.1490 -10.9847 4.5547 26 6 -0.0849 -6.4884 0.0009 27 6 0.3720 -5.1851 -0.0053 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8898 31 1 3.1567 -3.4354 -0.0009 32 1 3.7009 -5.7913 -0.0009 33 1 2.8752 -8.1096 0.0103 34 1 -0.6474 -9.0072 -0.5005 35 1 1.0308 -9.6006 -0.4978 36 1 3.1011 -9.4998 2.0398 37 1 2.5033 -10.5741 0.7523 38 1 3.6778 -12.1173 2.0295 39 1 2.0884 -12.2222 2.8228 40 1 4.3998 -10.4475 3.7182 41 1 3.9282 -11.9845 4.4760 42 1 2.5222 -9.3239 4.5067 43 1 2.8046 -10.4724 5.8364 44 1 0.5398 -10.8497 5.4484 45 1 1.2465 -12.0483 4.3373 46 1 -1.1464 -6.6878 0.0012 47 1 -0.3314 -4.3657 -0.0096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583748681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:24 Heat of formation + Delta-G solvation = 86.229511 kcal Electronic energy + Delta-G solvation = -26965.294212 eV Core-core repulsion = 23341.210435 eV Total energy + Delta-G solvation = -3624.083777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.29929 -39.01724 -38.07824 -35.68055 -34.43223 -33.01172 -32.11622 -31.47487 -30.44669 -29.33847 -27.47846 -26.49189 -25.38534 -24.76475 -23.17773 -21.81205 -21.35890 -20.68249 -20.42201 -20.05603 -17.35526 -17.03415 -16.76291 -15.96443 -15.57718 -15.46466 -15.32402 -14.86869 -14.66670 -14.38321 -14.24531 -13.62610 -13.50095 -13.24502 -13.23826 -13.08544 -12.89919 -12.50906 -12.24572 -12.15149 -11.95605 -11.74743 -11.64060 -11.43843 -11.33528 -11.18829 -11.03718 -10.94439 -10.90153 -10.49331 -10.19895 -10.16472 -10.10971 -9.44220 -9.42005 -8.93160 -8.56420 -8.46416 -6.59536 -6.23019 -4.28970 1.75055 1.91586 2.07484 2.43151 2.94354 3.22128 3.27064 3.28604 3.99133 4.10212 4.14176 4.19365 4.22342 4.32729 4.52598 4.60161 4.64817 4.67721 4.74504 4.85095 5.03940 5.11802 5.13904 5.18836 5.22703 5.29320 5.34900 5.41981 5.43460 5.55442 5.64475 5.67505 5.79683 5.81595 5.89334 5.93050 6.16406 6.18874 6.30692 6.47543 6.79862 6.86432 6.92221 7.06293 7.11839 7.39271 7.40381 7.62248 7.91676 8.23335 8.61788 8.82274 8.85892 9.37432 10.87495 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.002388 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.764095 B =11721.723605 C =12016.177442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.250 3.750 10 N -0.727 5.727 11 C 0.239 3.761 12 C -0.219 4.219 13 C -0.064 4.064 14 C -0.179 4.179 15 C 0.023 3.977 16 C 0.193 3.807 17 N -0.295 5.295 18 N -0.295 5.295 19 C 0.168 3.832 20 N -0.464 5.464 21 C 0.103 3.897 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.033 4.033 26 C -0.046 4.046 27 C -0.200 4.200 28 H 0.267 0.733 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.391 0.609 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.106 -25.852 4.266 27.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.129 3.871 10 N -0.349 5.349 11 C 0.128 3.872 12 C -0.242 4.242 13 C -0.083 4.083 14 C -0.183 4.183 15 C -0.017 4.017 16 C -0.074 4.074 17 N -0.135 5.135 18 N -0.134 5.134 19 C -0.099 4.099 20 N -0.156 5.156 21 C -0.020 4.020 22 C -0.178 4.178 23 C -0.161 4.161 24 C -0.164 4.164 25 C -0.072 4.072 26 C -0.065 4.065 27 C -0.224 4.224 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.224 0.776 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.136 0.864 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.367 -25.153 4.672 26.364 hybrid contribution 2.137 0.881 -0.368 2.341 sum 8.504 -24.273 4.304 26.077 Atomic orbital electron populations 1.69933 1.06081 1.27542 1.48954 1.24935 0.94946 0.99464 0.94603 0.86463 0.79448 0.82240 0.78729 1.20046 1.20979 1.20070 1.21144 0.93279 0.90442 1.53157 0.92072 1.19127 0.88652 0.82608 0.96704 1.45579 1.09610 1.02589 1.77072 1.18116 0.92902 0.85620 0.90530 1.20434 0.98277 0.91922 1.13604 1.20458 0.94078 0.95511 0.98207 1.18982 0.93419 0.92926 1.12999 1.18784 1.03334 0.93788 0.85777 1.24851 0.86133 0.98568 0.97825 1.74355 1.21753 1.18795 0.98580 1.74186 1.12724 1.13297 1.13230 1.24537 0.92109 1.04380 0.88882 1.45974 1.12555 1.44926 1.12126 1.22027 0.79397 0.99543 1.00985 1.22022 1.02028 0.96763 0.96943 1.21597 0.98371 1.00868 0.95297 1.21626 0.93315 1.00476 1.00967 1.20148 0.95476 0.98465 0.93159 1.20719 0.98827 0.91603 0.95343 1.20768 0.94109 0.97150 1.10335 0.92324 0.96037 0.96113 0.77582 0.86959 0.87678 0.88066 0.90094 0.89089 0.88700 0.89480 0.90136 0.91142 0.90992 0.91401 0.90224 0.88400 0.89296 0.86421 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.38 4.67 -5.20 -0.02 6.36 16 10 N -0.73 -15.40 5.72 -59.81 -0.34 -15.75 16 11 C 0.24 4.58 6.65 -83.79 -0.56 4.02 16 12 C -0.22 -3.49 9.90 -39.38 -0.39 -3.88 16 13 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 14 C -0.18 -2.55 5.12 -104.59 -0.54 -3.09 16 15 C 0.02 0.26 5.70 -29.03 -0.17 0.10 16 16 C 0.19 2.64 7.27 -155.18 -1.13 1.51 16 17 N -0.30 -5.02 12.22 32.76 0.40 -4.61 16 18 N -0.29 -4.81 12.22 32.72 0.40 -4.41 16 19 C 0.17 2.06 6.92 -155.35 -1.08 0.99 16 20 N -0.46 -5.17 3.05 -110.89 -0.34 -5.50 16 21 C 0.10 0.72 6.27 -4.07 -0.03 0.70 16 22 C -0.14 -0.67 5.55 -26.77 -0.15 -0.82 16 23 C -0.12 -0.57 5.67 -27.06 -0.15 -0.72 16 24 C -0.13 -0.81 5.68 -26.87 -0.15 -0.96 16 25 C -0.03 -0.26 5.55 -27.81 -0.15 -0.41 16 26 C -0.05 -0.76 9.69 -39.61 -0.38 -1.14 16 27 C -0.20 -3.85 9.31 -39.38 -0.37 -4.22 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.59 7.94 -51.93 -0.41 0.18 16 30 H 0.02 0.58 7.96 -51.93 -0.41 0.16 16 31 H 0.39 7.65 8.33 -40.82 -0.34 7.31 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.08 0.69 7.24 -51.93 -0.38 0.31 16 36 H 0.09 0.64 7.82 -51.93 -0.41 0.24 16 37 H 0.09 0.51 7.29 -51.93 -0.38 0.13 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.44 5.69 -51.93 -0.30 0.15 16 40 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 41 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.53 6.34 -51.93 -0.33 0.20 16 46 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 47 H 0.13 2.61 6.73 -52.49 -0.35 2.25 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -33.03 377.75 -11.58 -44.61 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.05 Total: 5.22 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -6.06 Total: -16.18 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.86 Total: -55.21 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.03 -11.58 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583748681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.838 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds