Wall clock time and date at job start Tue Mar 31 2020 14:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48496 * 109.47175 * 240.00593 * 3 2 1 5 5 H 1.48504 * 109.47058 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47035 * 120.00201 * 3 2 1 7 7 C 1.37881 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00085 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47429 * 180.02562 * 9 7 2 11 11 C 1.39669 * 120.00681 * 179.97438 * 10 9 7 12 12 C 1.38905 * 120.07711 * 179.97438 * 11 10 9 13 13 C 1.38102 * 119.92398 * 179.72013 * 12 11 10 14 14 C 1.38284 * 120.07730 * 0.28542 * 13 12 11 15 15 C 1.50702 * 119.92910 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47375 * 89.99517 * 15 14 13 17 17 N 1.30686 * 126.42982 * 90.02434 * 16 15 14 18 18 N 1.28745 * 109.69661 * 179.64577 * 17 16 15 19 19 C 1.30254 * 109.54175 * 359.82349 * 18 17 16 20 20 N 1.35135 * 126.42963 * 269.72008 * 16 15 14 21 21 C 1.46325 * 127.21964 * 2.00164 * 20 16 15 22 22 C 1.53125 * 109.26860 * 206.98470 * 21 20 16 23 23 C 1.52793 * 109.72143 * 270.56197 * 22 21 20 24 24 C 1.52565 * 110.50972 * 61.41091 * 23 22 21 25 25 C 1.50674 * 127.18356 * 180.87796 * 19 18 17 26 26 C 1.38288 * 120.14784 * 0.02562 * 14 13 12 27 27 C 1.38104 * 120.07422 * 359.96444 * 26 14 13 28 28 H 0.97000 * 120.00169 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47512 * 59.99583 * 9 7 2 30 30 H 1.09006 * 109.47026 * 299.99617 * 9 7 2 31 31 H 0.97008 * 119.99236 * 359.97438 * 10 9 7 32 32 H 1.08002 * 120.04044 * 0.02562 * 12 11 10 33 33 H 1.08000 * 119.96256 * 180.29943 * 13 12 11 34 34 H 1.08998 * 109.46900 * 209.99776 * 15 14 13 35 35 H 1.09005 * 109.46585 * 329.99345 * 15 14 13 36 36 H 1.08998 * 109.71862 * 86.94473 * 21 20 16 37 37 H 1.09004 * 109.38711 * 326.82617 * 21 20 16 38 38 H 1.08997 * 109.43046 * 150.47954 * 22 21 20 39 39 H 1.09001 * 109.38672 * 30.61084 * 22 21 20 40 40 H 1.09004 * 109.26711 * 301.15296 * 23 22 21 41 41 H 1.08994 * 109.27391 * 181.68094 * 23 22 21 42 42 H 1.09001 * 109.45889 * 273.40140 * 24 23 22 43 43 H 1.08998 * 109.45139 * 153.46202 * 24 23 22 44 44 H 1.08993 * 109.53965 * 346.68470 * 25 19 18 45 45 H 1.08996 * 109.53740 * 106.84772 * 25 19 18 46 46 H 1.08007 * 119.96217 * 179.97438 * 26 14 13 47 47 H 1.07997 * 120.03623 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7374 -4.9296 0.0000 12 6 2.6387 -5.9865 -0.0005 13 6 2.1750 -7.2873 0.0059 14 6 0.8151 -7.5383 0.0068 15 6 0.3127 -8.9591 0.0132 16 6 0.1452 -9.4263 1.4361 17 7 -0.9326 -9.3168 2.1671 18 7 -0.7225 -9.8292 3.3294 19 6 0.4943 -10.2901 3.3889 20 7 1.0793 -10.0423 2.1938 21 6 2.4592 -10.3526 1.8187 22 6 2.9371 -11.5710 2.6136 23 6 3.5640 -11.1143 3.9300 24 6 2.5365 -10.3779 4.7842 25 6 1.1490 -10.9847 4.5547 26 6 -0.0849 -6.4884 0.0009 27 6 0.3720 -5.1851 -0.0053 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8898 31 1 3.1567 -3.4354 -0.0009 32 1 3.7009 -5.7913 -0.0009 33 1 2.8752 -8.1096 0.0103 34 1 -0.6474 -9.0072 -0.5005 35 1 1.0308 -9.6006 -0.4978 36 1 3.1011 -9.4998 2.0398 37 1 2.5033 -10.5741 0.7523 38 1 3.6778 -12.1173 2.0295 39 1 2.0884 -12.2222 2.8228 40 1 4.3998 -10.4475 3.7182 41 1 3.9282 -11.9845 4.4760 42 1 2.5222 -9.3239 4.5067 43 1 2.8046 -10.4724 5.8364 44 1 0.5398 -10.8497 5.4484 45 1 1.2465 -12.0483 4.3373 46 1 -1.1464 -6.6878 0.0012 47 1 -0.3314 -4.3657 -0.0096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583748681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:23 Heat of formation + Delta-G solvation = 67.509561 kcal Electronic energy + Delta-G solvation = -26966.105970 eV Core-core repulsion = 23341.210435 eV Total energy + Delta-G solvation = -3624.895535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.24163 -40.37472 -38.64888 -37.17527 -35.46795 -34.71803 -33.26000 -32.33005 -31.77366 -30.52709 -28.98984 -27.28273 -26.61669 -25.53010 -24.93682 -23.20378 -22.53649 -21.56696 -21.27692 -20.84267 -19.16773 -17.94272 -17.55682 -17.51277 -17.03600 -16.49442 -16.23682 -15.95362 -15.82277 -15.34571 -15.17709 -14.96979 -14.86611 -14.62726 -14.29848 -14.15476 -13.96755 -13.75277 -13.38902 -13.17331 -12.97024 -12.89914 -12.79945 -12.71089 -12.51818 -12.32212 -12.19263 -11.93046 -11.87702 -11.71654 -11.48885 -11.44161 -11.11415 -11.03828 -10.89685 -10.55521 -9.97222 -9.79391 -8.34059 -8.15153 -6.49234 0.58812 0.63030 0.96432 1.38017 1.41674 1.50044 1.64376 1.89645 2.31149 2.87544 2.93557 3.01369 3.31302 3.55893 3.65494 3.73760 3.82113 3.97014 4.01560 4.14085 4.16546 4.19676 4.21923 4.33719 4.51054 4.58607 4.65295 4.70658 4.73532 4.80711 4.83159 4.91254 4.97655 5.03680 5.06435 5.12517 5.15218 5.19965 5.23508 5.28325 5.33716 5.40685 5.46535 5.52090 5.55846 5.78655 5.83150 6.04111 6.13463 6.44134 6.70195 7.13004 7.25703 7.81023 8.77762 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.002388 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.764095 B =11721.723605 C =12016.177442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.560 4.560 8 H 0.073 0.927 9 C 0.274 3.726 10 N -0.734 5.734 11 C 0.207 3.793 12 C -0.209 4.209 13 C -0.051 4.051 14 C -0.161 4.161 15 C 0.027 3.973 16 C 0.188 3.812 17 N -0.348 5.348 18 N -0.351 5.351 19 C 0.177 3.823 20 N -0.458 5.458 21 C 0.088 3.912 22 C -0.134 4.134 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.033 4.033 26 C -0.058 4.058 27 C -0.229 4.229 28 H 0.269 0.731 29 H -0.011 1.011 30 H -0.017 1.017 31 H 0.399 0.601 32 H 0.138 0.862 33 H 0.157 0.843 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.040 0.960 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.120 -28.703 4.018 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.597 4.597 8 H 0.092 0.908 9 C 0.151 3.849 10 N -0.360 5.360 11 C 0.100 3.900 12 C -0.232 4.232 13 C -0.069 4.069 14 C -0.165 4.165 15 C -0.013 4.013 16 C -0.081 4.081 17 N -0.187 5.187 18 N -0.190 5.190 19 C -0.092 4.092 20 N -0.149 5.149 21 C -0.032 4.032 22 C -0.172 4.172 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.072 4.072 26 C -0.077 4.077 27 C -0.252 4.252 28 H 0.078 0.922 29 H 0.007 0.993 30 H 0.001 0.999 31 H 0.233 0.767 32 H 0.156 0.844 33 H 0.175 0.825 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.132 0.868 46 H 0.137 0.863 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.405 -28.071 4.422 30.262 hybrid contribution 0.859 1.543 -0.245 1.783 sum 11.264 -26.528 4.177 29.121 Atomic orbital electron populations 1.70089 1.08015 1.28646 1.49930 1.25996 0.95826 1.03663 0.93849 0.85267 0.78048 0.76941 0.79358 1.18752 1.20695 1.18997 1.21562 0.94031 0.91175 1.52970 0.90848 1.18506 0.88720 0.84276 0.93440 1.45148 1.08987 1.02436 1.79434 1.18401 0.93389 0.85613 0.92575 1.20776 0.98967 0.91728 1.11746 1.20972 0.94475 0.95950 0.95553 1.19327 0.93571 0.93738 1.09862 1.18911 1.04840 0.92340 0.85160 1.25053 0.86154 0.98535 0.98308 1.74227 1.24283 1.20606 0.99564 1.74072 1.15453 1.15692 1.13773 1.25254 0.91229 1.02607 0.90089 1.46221 1.13704 1.43786 1.11158 1.22526 0.76916 1.00763 1.03035 1.22038 1.02388 0.95721 0.97031 1.21606 0.97647 1.01426 0.95104 1.21613 0.92976 0.98928 1.02458 1.20386 0.95921 0.99543 0.91366 1.20855 0.99729 0.91308 0.95773 1.20687 0.94204 0.97489 1.12839 0.92172 0.99322 0.99881 0.76662 0.84439 0.82506 0.87804 0.85588 0.88745 0.86120 0.86655 0.90800 0.90588 0.89110 0.94149 0.88774 0.88820 0.86759 0.86310 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.01 0.36 5.46 84.66 0.46 0.83 16 3 Si 0.98 43.26 29.54 68.60 2.03 45.29 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.56 -31.39 9.28 25.60 0.24 -31.15 16 8 H 0.07 3.83 7.60 -2.91 -0.02 3.81 16 9 C 0.27 15.02 4.67 85.63 0.40 15.42 16 10 N -0.73 -32.59 5.72 -343.15 -1.96 -34.55 16 11 C 0.21 8.19 6.65 38.21 0.25 8.44 16 12 C -0.21 -6.22 9.90 22.40 0.22 -6.00 16 13 C -0.05 -1.20 9.69 22.25 0.22 -0.98 16 14 C -0.16 -4.27 5.12 -19.84 -0.10 -4.37 16 15 C 0.03 0.54 5.70 29.10 0.17 0.70 16 16 C 0.19 4.85 7.27 138.05 1.00 5.85 16 17 N -0.35 -12.03 12.22 -50.28 -0.61 -12.65 16 18 N -0.35 -11.73 12.22 -50.39 -0.62 -12.34 16 19 C 0.18 4.18 6.92 138.09 0.96 5.13 16 20 N -0.46 -9.05 3.05 -504.73 -1.54 -10.59 16 21 C 0.09 0.82 6.27 86.45 0.54 1.36 16 22 C -0.13 -0.63 5.55 30.57 0.17 -0.46 16 23 C -0.12 -0.59 5.67 30.38 0.17 -0.42 16 24 C -0.12 -1.26 5.68 30.51 0.17 -1.09 16 25 C -0.03 -0.46 5.55 29.90 0.17 -0.29 16 26 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 27 C -0.23 -9.50 9.31 22.40 0.21 -9.29 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 29 H -0.01 -0.66 7.94 -2.39 -0.02 -0.68 16 30 H -0.02 -1.01 7.96 -2.38 -0.02 -1.03 16 31 H 0.40 15.88 8.33 -92.70 -0.77 15.10 16 32 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.10 2.09 8.08 -2.39 -0.02 2.07 16 35 H 0.13 1.43 7.24 -2.38 -0.02 1.41 16 36 H 0.09 0.87 7.82 -2.39 -0.02 0.85 16 37 H 0.12 0.52 7.29 -2.38 -0.02 0.50 16 38 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.07 0.49 5.69 -2.39 -0.01 0.48 16 40 H 0.08 0.34 8.09 -2.38 -0.02 0.32 16 41 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.04 0.65 7.84 -2.39 -0.02 0.63 16 43 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.11 1.03 6.34 -2.39 -0.02 1.01 16 46 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 47 H 0.09 4.25 6.73 -2.91 -0.02 4.23 16 Total: -1.00 -79.59 377.75 3.25 -76.34 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.21 Total: 22.39 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 5.46 Total: -18.07 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -4.45 Total: -125.95 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -79.59 3.25 -76.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583748681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.850 kcal (2) G-P(sol) polarization free energy of solvation -79.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds