Wall clock time and date at job start Tue Mar 31 2020 14:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38142 * 120.03522 * 2 1 4 4 C 1.38257 * 120.06469 * 180.02562 * 3 2 1 5 5 C 1.38300 * 120.13075 * 0.02562 * 4 3 2 6 6 C 1.38102 * 120.06478 * 359.72024 * 5 4 3 7 7 C 1.38811 * 120.03036 * 180.02562 * 2 1 3 8 8 N 1.40241 * 120.06247 * 359.97438 * 7 2 1 9 9 C 1.36111 * 125.94159 * 173.69795 * 8 7 2 10 10 C 1.35372 * 106.05689 * 180.02562 * 9 8 7 11 11 C 1.50696 * 126.73589 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47437 * 95.00015 * 11 10 9 13 13 C 1.46853 * 110.99800 * 45.78840 * 12 11 10 14 14 C 1.53034 * 109.52058 * 185.84122 * 13 12 11 15 15 C 1.53118 * 109.27939 * 300.82060 * 14 13 12 16 16 C 1.50701 * 109.57509 * 177.59363 * 15 14 13 17 17 H 1.08007 * 119.99946 * 240.28776 * 16 15 14 18 18 C 1.37879 * 119.99999 * 60.28498 * 16 15 14 19 19 N 1.31515 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99937 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47040 * 90.00141 * 20 18 16 22 22 H 1.48494 * 109.47291 * 209.99846 * 20 18 16 23 23 H 1.48504 * 109.47232 * 330.00274 * 20 18 16 24 24 C 1.53117 * 109.16157 * 57.65758 * 15 14 13 25 25 C 1.46840 * 111.00216 * 170.00010 * 12 11 10 26 26 N 1.33781 * 106.53141 * 0.22499 * 10 9 8 27 27 N 1.28601 * 109.05907 * 359.62300 * 26 10 9 28 28 H 1.09004 * 109.46633 * 263.69258 * 1 2 3 29 29 H 1.09003 * 109.47427 * 23.69043 * 1 2 3 30 30 H 1.08995 * 109.47396 * 143.69402 * 1 2 3 31 31 H 1.07999 * 119.96924 * 0.02591 * 3 2 1 32 32 H 1.08002 * 119.93187 * 180.02562 * 4 3 2 33 33 H 1.08004 * 119.96610 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.02927 * 180.30378 * 6 5 4 35 35 H 1.08008 * 126.97444 * 0.03434 * 9 8 7 36 36 H 1.09003 * 109.47102 * 334.99805 * 11 10 9 37 37 H 1.08998 * 109.46868 * 215.00262 * 11 10 9 38 38 H 1.09000 * 109.46459 * 305.85675 * 13 12 11 39 39 H 1.08997 * 109.46187 * 65.82860 * 13 12 11 40 40 H 1.08999 * 109.49981 * 180.88073 * 14 13 12 41 41 H 1.09002 * 109.53987 * 60.78126 * 14 13 12 42 42 H 1.08999 * 109.52423 * 297.75238 * 15 14 13 43 43 H 0.96996 * 119.99798 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.50591 * 182.40275 * 24 15 14 45 45 H 1.09004 * 109.53592 * 62.30403 * 24 15 14 46 46 H 1.09005 * 109.46353 * 294.17725 * 25 12 11 47 47 H 1.08999 * 109.46347 * 54.15563 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1966 -0.0005 5 6 4.2758 0.0009 -0.0016 6 6 3.5900 -1.1978 0.0037 7 6 2.2016 -1.2018 -0.0005 8 7 1.5024 -2.4174 -0.0005 9 6 2.0535 -3.6561 -0.1220 10 6 1.0220 -4.5313 -0.0718 11 6 1.1088 -6.0330 -0.1640 12 7 1.1487 -6.6051 1.1884 13 6 0.1328 -5.9883 2.0509 14 6 0.2985 -6.5008 3.4833 15 6 0.1485 -8.0246 3.4956 16 6 0.3691 -8.5424 4.8935 17 1 1.1694 -9.2404 5.0909 18 6 -0.4506 -8.1252 5.9206 19 7 -1.4254 -7.2757 5.6803 20 14 -0.1776 -8.7676 7.6533 21 1 0.7627 -7.8702 8.3716 22 1 -1.4739 -8.8072 8.3766 23 1 0.3956 -10.1361 7.5893 24 6 1.1864 -8.6394 2.5525 25 6 0.9949 -8.0649 1.1470 26 7 -0.0901 -3.8014 0.0700 27 7 0.2277 -2.5560 0.1138 28 1 -0.3633 -0.1129 1.0215 29 1 -0.3634 0.9411 -0.4129 30 1 -0.3634 -0.8281 -0.6084 31 1 1.6585 2.1313 0.0004 32 1 4.1194 2.1329 -0.0001 33 1 5.3558 0.0045 -0.0016 34 1 4.1332 -2.1313 0.0078 35 1 3.1012 -3.8927 -0.2353 36 1 2.0139 -6.3122 -0.7035 37 1 0.2370 -6.4154 -0.6947 38 1 0.2532 -4.9051 2.0366 39 1 -0.8605 -6.2481 1.6850 40 1 -0.4655 -6.0548 4.1200 41 1 1.2864 -6.2295 3.8556 42 1 -0.8530 -8.2948 3.1609 43 1 -2.0023 -6.9825 6.4028 44 1 1.0567 -9.7213 2.5242 45 1 2.1887 -8.4022 2.9091 46 1 -0.0025 -8.3149 0.7852 47 1 1.7416 -8.4899 0.4763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589173311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:33 Heat of formation + Delta-G solvation = 137.808798 kcal Electronic energy + Delta-G solvation = -27334.716764 eV Core-core repulsion = 23712.869633 eV Total energy + Delta-G solvation = -3621.847131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.51140 -39.82167 -38.17251 -35.04565 -33.94066 -33.28930 -32.00325 -30.42894 -30.23550 -29.67165 -27.37378 -26.84374 -24.67897 -24.12225 -22.64721 -22.08501 -21.64252 -21.30913 -20.26392 -18.47560 -18.29846 -16.76604 -16.28453 -16.23898 -15.70100 -15.32755 -15.11355 -14.57925 -14.39600 -14.38662 -13.89475 -13.68812 -13.59879 -13.24388 -12.86143 -12.78163 -12.54450 -12.33921 -12.22284 -11.90942 -11.79962 -11.59698 -11.45756 -10.94078 -10.90797 -10.87120 -10.84122 -10.63978 -10.38218 -10.12905 -9.90845 -9.38105 -9.33143 -9.22282 -8.88771 -8.77122 -8.58981 -8.22080 -7.69347 -5.89614 -3.95311 0.37763 0.84361 1.84810 2.15741 2.50698 3.28061 3.35614 3.42153 3.45163 4.11131 4.24940 4.37306 4.50526 4.56006 4.63086 4.73345 4.83654 4.87391 5.05051 5.11861 5.26270 5.39337 5.40106 5.48813 5.54572 5.62269 5.75144 5.80148 5.88264 5.97537 5.98459 6.01644 6.13722 6.20521 6.21565 6.25011 6.37852 6.44039 6.70600 6.74927 6.78232 6.93811 7.14244 7.22244 7.51718 7.67413 7.74295 7.89820 8.12966 8.25046 8.46295 8.55776 9.08526 9.68625 11.16356 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.002756 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.795405 B =10155.372918 C =10817.248174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.105 4.105 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.114 4.114 7 C 0.123 3.877 8 N -0.246 5.246 9 C -0.037 4.037 10 C 0.004 3.996 11 C 0.135 3.865 12 N -0.531 5.531 13 C 0.061 3.939 14 C -0.103 4.103 15 C 0.048 3.952 16 C -0.510 4.510 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.105 4.105 25 C 0.061 3.939 26 N -0.252 5.252 27 N -0.078 5.078 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.192 0.808 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.039 0.961 42 H 0.021 0.979 43 H 0.259 0.741 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.027 0.973 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.840 16.181 -16.022 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.066 4.066 3 C -0.124 4.124 4 C -0.129 4.129 5 C -0.126 4.126 6 C -0.134 4.134 7 C 0.031 3.969 8 N -0.033 5.033 9 C -0.185 4.185 10 C -0.132 4.132 11 C 0.006 3.994 12 N -0.257 5.257 13 C -0.066 4.066 14 C -0.141 4.141 15 C 0.029 3.971 16 C -0.548 4.548 17 H 0.072 0.928 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.143 4.143 25 C -0.067 4.067 26 N -0.120 5.120 27 N -0.055 5.055 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.209 0.791 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.045 0.955 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.745 17.007 -15.562 25.027 hybrid contribution 0.492 -0.865 0.614 1.169 sum 10.237 16.142 -14.948 24.265 Atomic orbital electron populations 1.21132 0.89190 1.03449 1.04117 1.19842 0.97560 0.90787 0.98432 1.21028 0.94221 0.97062 1.00075 1.21321 0.94235 0.98529 0.98830 1.21007 1.00387 0.91308 0.99859 1.20949 0.90992 1.00101 1.01403 1.17592 0.90857 0.82271 1.06184 1.44597 1.06410 1.05733 1.46586 1.23449 1.01845 0.82965 1.10222 1.21857 0.88749 0.97736 1.04859 1.20378 1.01516 0.84890 0.92636 1.62235 1.50664 1.05079 1.07745 1.22278 0.91380 0.97525 0.95414 1.21652 1.01373 0.99256 0.91802 1.18686 0.93416 0.91566 0.93421 1.21205 1.14672 1.25964 0.92997 0.92792 1.24983 0.95169 0.95168 0.98766 1.69891 1.18380 1.32639 1.32028 0.86652 0.77376 0.79280 0.85005 1.20812 1.21353 1.20003 1.21670 1.01306 0.98322 0.93019 1.22133 0.98613 0.86591 0.99347 1.75169 1.25539 0.96100 1.15158 1.78423 0.93455 1.13882 1.19753 0.90132 0.91668 0.88827 0.84724 0.85096 0.84663 0.84631 0.79077 0.89459 0.93287 0.92653 0.95569 0.89119 0.94220 0.96113 0.93138 0.93085 0.92522 0.95492 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.76 36.00 0.32 -0.96 16 2 C -0.06 -0.66 5.89 -104.45 -0.62 -1.27 16 3 C -0.11 -0.81 9.67 -39.61 -0.38 -1.19 16 4 C -0.11 -0.71 10.04 -39.55 -0.40 -1.11 16 5 C -0.11 -0.72 10.04 -39.61 -0.40 -1.12 16 6 C -0.11 -0.99 9.46 -39.41 -0.37 -1.36 16 7 C 0.12 1.39 6.65 -83.57 -0.56 0.83 16 8 N -0.25 -3.38 3.55 -10.47 -0.04 -3.42 16 9 C -0.04 -0.48 10.84 -16.68 -0.18 -0.66 16 10 C 0.00 0.06 5.16 -82.77 -0.43 -0.37 16 11 C 0.14 2.02 5.84 -4.98 -0.03 1.99 16 12 N -0.53 -9.77 4.80 -236.12 -1.13 -10.90 16 13 C 0.06 1.33 4.91 -3.83 -0.02 1.31 16 14 C -0.10 -2.58 5.12 -26.65 -0.14 -2.71 16 15 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 16 C -0.51 -14.37 8.56 -34.44 -0.29 -14.67 16 17 H 0.05 1.50 7.75 -52.48 -0.41 1.09 16 18 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 19 N -0.89 -26.27 11.38 55.43 0.63 -25.64 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.11 -2.24 5.32 -26.65 -0.14 -2.38 16 25 C 0.06 1.10 5.42 -3.84 -0.02 1.08 16 26 N -0.25 -4.46 11.19 33.29 0.37 -4.09 16 27 N -0.08 -1.25 9.32 60.35 0.56 -0.69 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.51 8.04 -51.93 -0.42 0.10 16 30 H 0.09 1.16 5.81 -51.93 -0.30 0.85 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 33 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 34 H 0.14 0.94 6.81 -52.49 -0.36 0.59 16 35 H 0.19 1.74 7.15 -52.48 -0.38 1.36 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.06 1.22 5.81 -51.93 -0.30 0.91 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.56 6.18 -51.93 -0.32 2.23 16 41 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.90 8.12 -51.93 -0.42 0.47 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -32.59 371.63 -10.08 -42.68 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.11 Total: -0.39 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -3.95 Total: -19.96 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.40 Total: -44.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.59 -10.08 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589173311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.487 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds