Wall clock time and date at job start Tue Mar 31 2020 14:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38142 * 120.03522 * 2 1 4 4 C 1.38257 * 120.06469 * 180.02562 * 3 2 1 5 5 C 1.38300 * 120.13075 * 0.02562 * 4 3 2 6 6 C 1.38102 * 120.06478 * 359.72024 * 5 4 3 7 7 C 1.38811 * 120.03036 * 180.02562 * 2 1 3 8 8 N 1.40241 * 120.06247 * 359.97438 * 7 2 1 9 9 C 1.36111 * 125.94159 * 173.69795 * 8 7 2 10 10 C 1.35372 * 106.05689 * 180.02562 * 9 8 7 11 11 C 1.50696 * 126.73589 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47437 * 95.00015 * 11 10 9 13 13 C 1.46853 * 110.99800 * 45.78840 * 12 11 10 14 14 C 1.53034 * 109.52058 * 185.84122 * 13 12 11 15 15 C 1.53118 * 109.27939 * 300.82060 * 14 13 12 16 16 C 1.50701 * 109.57509 * 177.59363 * 15 14 13 17 17 H 1.08007 * 119.99946 * 240.28776 * 16 15 14 18 18 C 1.37879 * 119.99999 * 60.28498 * 16 15 14 19 19 N 1.31515 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99937 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47040 * 90.00141 * 20 18 16 22 22 H 1.48494 * 109.47291 * 209.99846 * 20 18 16 23 23 H 1.48504 * 109.47232 * 330.00274 * 20 18 16 24 24 C 1.53117 * 109.16157 * 57.65758 * 15 14 13 25 25 C 1.46840 * 111.00216 * 170.00010 * 12 11 10 26 26 N 1.33781 * 106.53141 * 0.22499 * 10 9 8 27 27 N 1.28601 * 109.05907 * 359.62300 * 26 10 9 28 28 H 1.09004 * 109.46633 * 263.69258 * 1 2 3 29 29 H 1.09003 * 109.47427 * 23.69043 * 1 2 3 30 30 H 1.08995 * 109.47396 * 143.69402 * 1 2 3 31 31 H 1.07999 * 119.96924 * 0.02591 * 3 2 1 32 32 H 1.08002 * 119.93187 * 180.02562 * 4 3 2 33 33 H 1.08004 * 119.96610 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.02927 * 180.30378 * 6 5 4 35 35 H 1.08008 * 126.97444 * 0.03434 * 9 8 7 36 36 H 1.09003 * 109.47102 * 334.99805 * 11 10 9 37 37 H 1.08998 * 109.46868 * 215.00262 * 11 10 9 38 38 H 1.09000 * 109.46459 * 305.85675 * 13 12 11 39 39 H 1.08997 * 109.46187 * 65.82860 * 13 12 11 40 40 H 1.08999 * 109.49981 * 180.88073 * 14 13 12 41 41 H 1.09002 * 109.53987 * 60.78126 * 14 13 12 42 42 H 1.08999 * 109.52423 * 297.75238 * 15 14 13 43 43 H 0.96996 * 119.99798 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.50591 * 182.40275 * 24 15 14 45 45 H 1.09004 * 109.53592 * 62.30403 * 24 15 14 46 46 H 1.09005 * 109.46353 * 294.17725 * 25 12 11 47 47 H 1.08999 * 109.46347 * 54.15563 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1966 -0.0005 5 6 4.2758 0.0009 -0.0016 6 6 3.5900 -1.1978 0.0037 7 6 2.2016 -1.2018 -0.0005 8 7 1.5024 -2.4174 -0.0005 9 6 2.0535 -3.6561 -0.1220 10 6 1.0220 -4.5313 -0.0718 11 6 1.1088 -6.0330 -0.1640 12 7 1.1487 -6.6051 1.1884 13 6 0.1328 -5.9883 2.0509 14 6 0.2985 -6.5008 3.4833 15 6 0.1485 -8.0246 3.4956 16 6 0.3691 -8.5424 4.8935 17 1 1.1694 -9.2404 5.0909 18 6 -0.4506 -8.1252 5.9206 19 7 -1.4254 -7.2757 5.6803 20 14 -0.1776 -8.7676 7.6533 21 1 0.7627 -7.8702 8.3716 22 1 -1.4739 -8.8072 8.3766 23 1 0.3956 -10.1361 7.5893 24 6 1.1864 -8.6394 2.5525 25 6 0.9949 -8.0649 1.1470 26 7 -0.0901 -3.8014 0.0700 27 7 0.2277 -2.5560 0.1138 28 1 -0.3633 -0.1129 1.0215 29 1 -0.3634 0.9411 -0.4129 30 1 -0.3634 -0.8281 -0.6084 31 1 1.6585 2.1313 0.0004 32 1 4.1194 2.1329 -0.0001 33 1 5.3558 0.0045 -0.0016 34 1 4.1332 -2.1313 0.0078 35 1 3.1012 -3.8927 -0.2353 36 1 2.0139 -6.3122 -0.7035 37 1 0.2370 -6.4154 -0.6947 38 1 0.2532 -4.9051 2.0366 39 1 -0.8605 -6.2481 1.6850 40 1 -0.4655 -6.0548 4.1200 41 1 1.2864 -6.2295 3.8556 42 1 -0.8530 -8.2948 3.1609 43 1 -2.0023 -6.9825 6.4028 44 1 1.0567 -9.7213 2.5242 45 1 2.1887 -8.4022 2.9091 46 1 -0.0025 -8.3149 0.7852 47 1 1.7416 -8.4899 0.4763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589173311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:32 Heat of formation + Delta-G solvation = 118.176653 kcal Electronic energy + Delta-G solvation = -27335.568078 eV Core-core repulsion = 23712.869633 eV Total energy + Delta-G solvation = -3622.698445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.55793 -40.51470 -39.76334 -36.30920 -35.40637 -34.07394 -33.63178 -31.87261 -31.47070 -30.97131 -28.49006 -28.07079 -26.32818 -25.08466 -23.89633 -23.58478 -22.88566 -22.43175 -21.28515 -20.32164 -19.13991 -18.45587 -17.80994 -16.87266 -16.80421 -16.50103 -16.30608 -16.09702 -15.79948 -15.39404 -14.95944 -14.79029 -14.73231 -14.59315 -14.23045 -14.16893 -13.97715 -13.51760 -13.37014 -13.29627 -13.03180 -12.84505 -12.72399 -12.60933 -12.29153 -12.23024 -12.02002 -11.92839 -11.90831 -11.82771 -11.81083 -11.35900 -10.80779 -10.65935 -10.40453 -10.34683 -9.89307 -9.54018 -9.19584 -8.07581 -6.22166 -0.38595 0.25145 0.97739 1.27271 1.35855 1.40024 1.40464 1.51266 2.43234 2.66158 3.09966 3.18984 3.26060 3.51102 3.68582 3.81905 3.98241 4.02634 4.21483 4.23154 4.30207 4.32211 4.37321 4.42938 4.48529 4.58877 4.64544 4.66351 4.71842 4.78897 4.85679 4.86548 4.89447 4.98817 5.03169 5.11575 5.24264 5.26036 5.30705 5.33791 5.41684 5.43566 5.56470 5.61428 5.61625 5.97040 5.97547 5.99986 6.21542 6.31290 6.39316 6.91012 7.37119 7.45983 8.96965 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.002756 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.795405 B =10155.372918 C =10817.248174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.085 4.085 3 C -0.109 4.109 4 C -0.100 4.100 5 C -0.103 4.103 6 C -0.116 4.116 7 C 0.081 3.919 8 N -0.239 5.239 9 C -0.024 4.024 10 C -0.022 4.022 11 C 0.139 3.861 12 N -0.531 5.531 13 C 0.084 3.916 14 C -0.092 4.092 15 C 0.044 3.956 16 C -0.530 4.530 17 H 0.056 0.944 18 C 0.006 3.994 19 N -0.922 5.922 20 Si 0.956 3.044 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.264 1.264 24 C -0.098 4.098 25 C 0.065 3.935 26 N -0.299 5.299 27 N -0.103 5.103 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.234 0.766 36 H 0.132 0.868 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.003 0.997 40 H 0.051 0.949 41 H 0.029 0.971 42 H -0.017 1.017 43 H 0.258 0.742 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.677 17.013 -17.066 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.087 4.087 3 C -0.127 4.127 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.136 4.136 7 C -0.010 4.010 8 N -0.026 5.026 9 C -0.172 4.172 10 C -0.159 4.159 11 C 0.010 3.990 12 N -0.256 5.256 13 C -0.044 4.044 14 C -0.130 4.130 15 C 0.025 3.975 16 C -0.568 4.568 17 H 0.074 0.926 18 C -0.192 4.192 19 N -0.561 5.561 20 Si 0.782 3.218 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.188 1.188 24 C -0.136 4.136 25 C -0.062 4.062 26 N -0.166 5.166 27 N -0.080 5.080 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.182 0.818 33 H 0.186 0.814 34 H 0.171 0.829 35 H 0.250 0.750 36 H 0.150 0.850 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.021 0.979 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.002 0.998 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.581 17.854 -16.622 27.920 hybrid contribution -0.612 -0.966 0.905 1.459 sum 12.970 16.888 -15.717 26.466 Atomic orbital electron populations 1.21023 0.90238 1.03623 1.02618 1.20011 0.97231 0.91798 0.99668 1.21337 0.95180 0.96789 0.99378 1.21788 0.93736 1.00002 0.96340 1.21463 1.02001 0.90536 0.98164 1.21277 0.89785 1.01880 1.00665 1.18087 0.92086 0.81597 1.09211 1.44859 1.05899 1.06981 1.44874 1.24036 1.03054 0.82106 1.08014 1.22091 0.89050 0.98295 1.06440 1.20534 1.03493 0.84496 0.90436 1.62179 1.48558 1.05253 1.09617 1.21843 0.91344 0.97225 0.94021 1.21402 0.99106 0.98974 0.93548 1.18664 0.92970 0.92051 0.93803 1.21614 1.14719 1.26067 0.94421 0.92556 1.25843 0.94904 0.95362 1.03049 1.70066 1.19220 1.33720 1.33141 0.85586 0.77332 0.79089 0.79836 1.20204 1.21124 1.18830 1.21538 0.99385 0.98708 0.93987 1.22126 0.99819 0.86344 0.97924 1.75103 1.27440 0.97103 1.16928 1.78398 0.95019 1.13376 1.21223 0.92002 0.89417 0.91211 0.82648 0.81768 0.81435 0.82917 0.74989 0.85039 0.93662 0.93205 0.97900 0.93071 0.95265 0.99838 0.93280 0.92241 0.92466 0.96180 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.76 71.23 0.62 -1.98 16 2 C -0.08 -1.71 5.89 -19.75 -0.12 -1.83 16 3 C -0.11 -1.42 9.67 22.25 0.22 -1.20 16 4 C -0.10 -0.91 10.04 22.29 0.22 -0.68 16 5 C -0.10 -0.98 10.04 22.25 0.22 -0.76 16 6 C -0.12 -1.69 9.46 22.38 0.21 -1.48 16 7 C 0.08 1.77 6.65 38.08 0.25 2.02 16 8 N -0.24 -6.59 3.55 -187.04 -0.66 -7.26 16 9 C -0.02 -0.58 10.84 83.37 0.90 0.32 16 10 C -0.02 -0.66 5.16 41.60 0.21 -0.45 16 11 C 0.14 3.91 5.84 85.56 0.50 4.41 16 12 N -0.53 -18.99 4.80 -900.95 -4.32 -23.32 16 13 C 0.08 3.78 4.91 86.32 0.42 4.21 16 14 C -0.09 -4.84 5.12 30.64 0.16 -4.69 16 15 C 0.04 2.33 2.16 -11.46 -0.02 2.30 16 16 C -0.53 -30.56 8.56 25.60 0.22 -30.34 16 17 H 0.06 3.14 7.75 -2.91 -0.02 3.12 16 18 C 0.01 0.37 5.31 84.66 0.45 0.82 16 19 N -0.92 -56.74 11.38 21.45 0.24 -56.50 16 20 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 C -0.10 -4.13 5.32 30.65 0.16 -3.97 16 25 C 0.07 2.24 5.42 86.33 0.47 2.71 16 26 N -0.30 -11.13 11.19 -48.59 -0.54 -11.68 16 27 N -0.10 -3.52 9.32 37.02 0.35 -3.17 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.09 1.41 8.04 -2.39 -0.02 1.39 16 30 H 0.07 1.89 5.81 -2.39 -0.01 1.87 16 31 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.16 0.41 8.06 -2.91 -0.02 0.38 16 33 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 34 H 0.15 1.58 6.81 -2.91 -0.02 1.56 16 35 H 0.23 3.36 7.15 -2.91 -0.02 3.34 16 36 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16 38 H 0.05 2.30 5.81 -2.39 -0.01 2.29 16 39 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.05 3.08 6.18 -2.39 -0.01 3.06 16 41 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 46 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.11 2.74 8.12 -2.39 -0.02 2.72 16 Total: -1.00 -76.97 371.63 3.15 -73.82 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.96 Total: 11.22 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 5.11 Total: -30.60 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -4.94 Total: -101.92 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.97 3.15 -73.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589173311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.994 kcal (2) G-P(sol) polarization free energy of solvation -76.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds