Wall clock time and date at job start Tue Mar 31 2020 14:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00320 * 2 1 4 4 H 1.48509 * 109.47096 * 270.00356 * 3 2 1 5 5 H 1.48493 * 109.47091 * 30.00306 * 3 2 1 6 6 H 1.48497 * 109.47355 * 150.00555 * 3 2 1 7 7 C 1.37875 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00127 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47322 * 175.20037 * 9 7 2 11 11 C 1.46903 * 111.00062 * 296.45320 * 10 9 7 12 12 C 1.50694 * 109.47197 * 293.95472 * 11 10 9 13 13 C 1.40058 * 125.87501 * 94.99946 * 12 11 10 14 14 C 1.34753 * 107.79824 * 180.02562 * 13 12 11 15 15 N 1.35287 * 107.91113 * 0.06287 * 14 13 12 16 16 N 1.31027 * 125.87218 * 275.02438 * 12 11 10 17 17 C 1.46591 * 124.54424 * 179.88184 * 15 14 13 18 18 C 1.53236 * 108.79744 * 342.73027 * 17 15 14 19 19 C 1.53157 * 109.55990 * 50.56639 * 18 17 15 20 20 C 1.50871 * 127.76009 * 180.08445 * 14 13 12 21 21 C 1.46897 * 111.00058 * 60.40800 * 10 9 7 22 22 C 1.50705 * 109.47033 * 71.98930 * 21 10 9 23 23 C 1.38230 * 119.61448 * 94.69993 * 22 21 10 24 24 C 1.38628 * 119.16052 * 179.97438 * 23 22 21 25 25 C 1.38677 * 118.41845 * 359.97438 * 24 23 22 26 26 C 1.38178 * 119.16625 * 359.97438 * 25 24 23 27 27 N 1.31854 * 119.62211 * 274.42515 * 22 21 10 28 28 H 0.96999 * 119.99562 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46968 * 55.20121 * 9 7 2 30 30 H 1.08999 * 109.47540 * 295.20477 * 9 7 2 31 31 H 1.09006 * 109.46962 * 173.95356 * 11 10 9 32 32 H 1.08994 * 109.47015 * 53.95643 * 11 10 9 33 33 H 1.07999 * 126.09812 * 359.96990 * 13 12 11 34 34 H 1.09008 * 109.58368 * 102.52401 * 17 15 14 35 35 H 1.08998 * 109.58173 * 222.79754 * 17 15 14 36 36 H 1.09001 * 109.46012 * 290.54308 * 18 17 15 37 37 H 1.09002 * 109.46133 * 170.59416 * 18 17 15 38 38 H 1.08999 * 109.51485 * 170.65265 * 19 18 17 39 39 H 1.09000 * 109.51534 * 50.47810 * 19 18 17 40 40 H 1.09003 * 109.72287 * 44.54998 * 20 14 13 41 41 H 1.08991 * 109.72325 * 283.87929 * 20 14 13 42 42 H 1.08997 * 109.47761 * 191.98826 * 21 10 9 43 43 H 1.09000 * 109.47166 * 311.99418 * 21 10 9 44 44 H 1.08000 * 120.42164 * 359.95376 * 23 22 21 45 45 H 1.07998 * 120.79166 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.41595 * 180.02562 * 25 24 23 47 47 H 1.07992 * 119.62270 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2013 -3.6133 -0.1170 11 6 2.9162 -3.5636 -1.3994 12 6 1.9442 -3.8022 -2.5260 13 6 1.2923 -2.8116 -3.2712 14 6 0.5107 -3.4272 -4.1800 15 7 0.6578 -4.7624 -4.0190 16 7 1.5631 -4.9721 -2.9765 17 6 -0.0321 -5.7774 -4.8206 18 6 -1.2215 -5.1217 -5.5301 19 6 -0.7530 -3.8550 -6.2524 20 6 -0.3848 -2.7884 -5.2125 21 6 3.1428 -3.6222 1.0105 22 6 2.4251 -4.0617 2.2607 23 6 2.4612 -5.3911 2.6375 24 6 1.7982 -5.7850 3.7896 25 6 1.1211 -4.8224 4.5231 26 6 1.1300 -3.5120 4.0848 27 7 1.7746 -3.1727 2.9854 28 1 -0.4849 0.8401 0.0004 29 1 0.5611 -2.5203 -0.8442 30 1 0.6907 -2.5953 0.9295 31 1 3.6873 -4.3338 -1.4156 32 1 3.3786 -2.5839 -1.5199 33 1 1.3967 -1.7446 -3.1402 34 1 0.6548 -6.1868 -5.5615 35 1 -0.3873 -6.5770 -4.1706 36 1 -1.9832 -4.8600 -4.7956 37 1 -1.6412 -5.8189 -6.2553 38 1 -1.5548 -3.4813 -6.8892 39 1 0.1204 -4.0856 -6.8624 40 1 0.1418 -1.9672 -5.6987 41 1 -1.2895 -2.4139 -4.7337 42 1 3.9582 -4.3135 0.7977 43 1 3.5451 -2.6197 1.1560 44 1 2.9989 -6.1140 2.0419 45 1 1.8088 -6.8168 4.1082 46 1 0.5940 -5.0935 5.4260 47 1 0.6054 -2.7563 4.6506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593016795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:12 Heat of formation + Delta-G solvation = 118.013529 kcal Electronic energy + Delta-G solvation = -27807.329977 eV Core-core repulsion = 24184.624459 eV Total energy + Delta-G solvation = -3622.705518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96292 -39.65686 -37.00829 -35.88717 -32.38213 -32.26246 -31.94468 -31.38599 -29.98477 -27.85816 -27.07950 -26.36736 -24.28352 -23.62666 -22.95192 -22.19732 -21.57494 -20.17778 -19.28983 -18.17895 -16.58410 -16.18344 -16.06769 -15.65555 -15.46663 -14.97955 -14.82461 -14.56768 -14.26738 -14.09948 -13.75365 -13.66784 -13.26337 -12.97015 -12.84844 -12.74721 -12.61664 -12.20072 -11.82968 -11.61873 -11.44347 -11.14939 -11.10314 -10.99923 -10.89028 -10.76442 -10.72769 -10.56445 -10.15279 -9.89826 -9.83905 -9.50574 -9.33805 -8.71957 -8.54898 -8.41136 -8.22302 -7.81227 -7.07802 -5.83703 -3.88573 1.60645 1.79002 2.44353 2.96346 3.37158 3.44338 3.46123 3.47675 4.32211 4.49421 4.55430 4.63193 4.72780 4.88077 4.91328 5.15385 5.24697 5.26321 5.34050 5.39252 5.43408 5.48189 5.53997 5.58970 5.61653 5.66085 5.73377 5.83060 5.91108 5.97575 6.06018 6.12373 6.13952 6.19679 6.30500 6.48815 6.53829 6.59131 6.64447 6.79196 6.88564 7.19653 7.33581 7.47120 7.59041 7.75623 8.11516 8.14525 8.38115 8.44364 8.47864 8.69454 9.17575 9.74364 11.22462 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009441 B = 0.004500 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.019017 B = 6220.783506 C = 8272.625581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.186 3.814 10 N -0.530 5.530 11 C 0.141 3.859 12 C 0.105 3.895 13 C -0.231 4.231 14 C 0.064 3.936 15 N -0.382 5.382 16 N -0.292 5.292 17 C 0.140 3.860 18 C -0.136 4.136 19 C -0.123 4.123 20 C -0.056 4.056 21 C 0.101 3.899 22 C 0.160 3.840 23 C -0.164 4.164 24 C -0.085 4.085 25 C -0.191 4.191 26 C 0.098 3.902 27 N -0.449 5.449 28 H 0.257 0.743 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -11.091 -5.712 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.061 3.939 10 N -0.255 5.255 11 C 0.011 3.989 12 C -0.062 4.062 13 C -0.260 4.260 14 C -0.061 4.061 15 N -0.167 5.167 16 N -0.113 5.113 17 C 0.018 3.982 18 C -0.174 4.174 19 C -0.161 4.161 20 C -0.095 4.095 21 C -0.028 4.028 22 C 0.022 3.978 23 C -0.185 4.185 24 C -0.111 4.111 25 C -0.211 4.211 26 C -0.060 4.060 27 N -0.158 5.158 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.167 0.833 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.286 -11.923 -5.936 13.322 hybrid contribution 0.525 1.706 0.336 1.816 sum 0.239 -10.217 -5.600 11.654 Atomic orbital electron populations 1.69959 1.05868 1.26148 1.50920 1.24819 0.94567 0.98506 0.95344 0.86782 0.80072 0.84431 0.77784 1.20964 1.21475 1.20092 1.21539 0.92768 0.91951 1.50451 0.92887 1.19854 0.90917 0.84798 0.98338 1.62514 1.16320 1.47988 0.98695 1.20212 0.91962 1.00478 0.86254 1.22146 0.97923 0.89706 0.96394 1.21100 1.04036 1.00990 0.99917 1.20827 1.00649 0.84672 0.99922 1.48449 1.35868 1.04295 1.28065 1.77177 1.08768 1.22791 1.02597 1.21561 0.93258 0.90003 0.93395 1.21928 0.97259 0.98052 1.00163 1.21652 1.01633 0.95049 0.97761 1.20370 0.98285 0.97408 0.93396 1.20871 0.93056 1.01184 0.87649 1.21260 0.92919 0.88986 0.94648 1.21933 1.01791 0.97182 0.97558 1.21435 0.95810 0.99306 0.94599 1.22028 1.02387 0.94994 1.01668 1.22786 0.95706 0.94629 0.92872 1.67744 1.05818 1.37867 1.04322 0.93281 0.94498 0.94403 0.91714 0.91695 0.83295 0.90836 0.89679 0.90632 0.89644 0.90716 0.91489 0.89460 0.89623 0.91461 0.91177 0.85364 0.85726 0.85729 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 3 Si 0.88 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.53 -14.33 7.34 -34.44 -0.25 -14.58 16 8 H 0.05 1.42 5.95 -52.48 -0.31 1.11 16 9 C 0.19 4.90 4.74 -4.98 -0.02 4.87 16 10 N -0.53 -11.76 4.65 -238.97 -1.11 -12.87 16 11 C 0.14 2.87 5.35 -4.98 -0.03 2.84 16 12 C 0.11 2.21 5.94 -82.26 -0.49 1.72 16 13 C -0.23 -4.76 9.60 -40.13 -0.39 -5.14 16 14 C 0.06 1.13 6.59 -82.22 -0.54 0.59 16 15 N -0.38 -6.62 4.04 -56.95 -0.23 -6.85 16 16 N -0.29 -5.93 12.62 33.74 0.43 -5.51 16 17 C 0.14 1.71 7.28 -3.87 -0.03 1.68 16 18 C -0.14 -1.31 5.93 -26.53 -0.16 -1.47 16 19 C -0.12 -1.20 5.97 -26.42 -0.16 -1.36 16 20 C -0.06 -0.73 6.29 -27.57 -0.17 -0.90 16 21 C 0.10 2.01 5.11 -4.98 -0.03 1.99 16 22 C 0.16 3.14 5.85 -82.58 -0.48 2.66 16 23 C -0.16 -2.67 9.72 -39.44 -0.38 -3.05 16 24 C -0.09 -1.21 10.18 -39.28 -0.40 -1.61 16 25 C -0.19 -2.75 10.11 -39.44 -0.40 -3.15 16 26 C 0.10 1.71 11.18 -17.55 -0.20 1.51 16 27 N -0.45 -9.51 9.03 -9.47 -0.09 -9.60 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.04 1.07 6.35 -51.93 -0.33 0.74 16 30 H 0.04 1.11 6.57 -51.93 -0.34 0.77 16 31 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 32 H 0.07 1.37 6.63 -51.93 -0.34 1.03 16 33 H 0.15 3.25 8.06 -52.49 -0.42 2.82 16 34 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.12 7.71 -51.93 -0.40 0.72 16 43 H 0.07 1.54 6.11 -51.93 -0.32 1.23 16 44 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 46 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 47 H 0.15 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -33.85 377.99 -10.89 -44.74 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.08 Total: 4.93 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -4.22 Total: -11.56 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.26 Total: -60.43 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.85 -10.89 -44.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593016795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.754 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds