Wall clock time and date at job start Tue Mar 31 2020 14:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00320 * 2 1 4 4 H 1.48509 * 109.47096 * 270.00356 * 3 2 1 5 5 H 1.48493 * 109.47091 * 30.00306 * 3 2 1 6 6 H 1.48497 * 109.47355 * 150.00555 * 3 2 1 7 7 C 1.37875 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00127 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47322 * 175.20037 * 9 7 2 11 11 C 1.46903 * 111.00062 * 296.45320 * 10 9 7 12 12 C 1.50694 * 109.47197 * 293.95472 * 11 10 9 13 13 C 1.40058 * 125.87501 * 94.99946 * 12 11 10 14 14 C 1.34753 * 107.79824 * 180.02562 * 13 12 11 15 15 N 1.35287 * 107.91113 * 0.06287 * 14 13 12 16 16 N 1.31027 * 125.87218 * 275.02438 * 12 11 10 17 17 C 1.46591 * 124.54424 * 179.88184 * 15 14 13 18 18 C 1.53236 * 108.79744 * 342.73027 * 17 15 14 19 19 C 1.53157 * 109.55990 * 50.56639 * 18 17 15 20 20 C 1.50871 * 127.76009 * 180.08445 * 14 13 12 21 21 C 1.46897 * 111.00058 * 60.40800 * 10 9 7 22 22 C 1.50705 * 109.47033 * 71.98930 * 21 10 9 23 23 C 1.38230 * 119.61448 * 94.69993 * 22 21 10 24 24 C 1.38628 * 119.16052 * 179.97438 * 23 22 21 25 25 C 1.38677 * 118.41845 * 359.97438 * 24 23 22 26 26 C 1.38178 * 119.16625 * 359.97438 * 25 24 23 27 27 N 1.31854 * 119.62211 * 274.42515 * 22 21 10 28 28 H 0.96999 * 119.99562 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46968 * 55.20121 * 9 7 2 30 30 H 1.08999 * 109.47540 * 295.20477 * 9 7 2 31 31 H 1.09006 * 109.46962 * 173.95356 * 11 10 9 32 32 H 1.08994 * 109.47015 * 53.95643 * 11 10 9 33 33 H 1.07999 * 126.09812 * 359.96990 * 13 12 11 34 34 H 1.09008 * 109.58368 * 102.52401 * 17 15 14 35 35 H 1.08998 * 109.58173 * 222.79754 * 17 15 14 36 36 H 1.09001 * 109.46012 * 290.54308 * 18 17 15 37 37 H 1.09002 * 109.46133 * 170.59416 * 18 17 15 38 38 H 1.08999 * 109.51485 * 170.65265 * 19 18 17 39 39 H 1.09000 * 109.51534 * 50.47810 * 19 18 17 40 40 H 1.09003 * 109.72287 * 44.54998 * 20 14 13 41 41 H 1.08991 * 109.72325 * 283.87929 * 20 14 13 42 42 H 1.08997 * 109.47761 * 191.98826 * 21 10 9 43 43 H 1.09000 * 109.47166 * 311.99418 * 21 10 9 44 44 H 1.08000 * 120.42164 * 359.95376 * 23 22 21 45 45 H 1.07998 * 120.79166 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.41595 * 180.02562 * 25 24 23 47 47 H 1.07992 * 119.62270 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2013 -3.6133 -0.1170 11 6 2.9162 -3.5636 -1.3994 12 6 1.9442 -3.8022 -2.5260 13 6 1.2923 -2.8116 -3.2712 14 6 0.5107 -3.4272 -4.1800 15 7 0.6578 -4.7624 -4.0190 16 7 1.5631 -4.9721 -2.9765 17 6 -0.0321 -5.7774 -4.8206 18 6 -1.2215 -5.1217 -5.5301 19 6 -0.7530 -3.8550 -6.2524 20 6 -0.3848 -2.7884 -5.2125 21 6 3.1428 -3.6222 1.0105 22 6 2.4251 -4.0617 2.2607 23 6 2.4612 -5.3911 2.6375 24 6 1.7982 -5.7850 3.7896 25 6 1.1211 -4.8224 4.5231 26 6 1.1300 -3.5120 4.0848 27 7 1.7746 -3.1727 2.9854 28 1 -0.4849 0.8401 0.0004 29 1 0.5611 -2.5203 -0.8442 30 1 0.6907 -2.5953 0.9295 31 1 3.6873 -4.3338 -1.4156 32 1 3.3786 -2.5839 -1.5199 33 1 1.3967 -1.7446 -3.1402 34 1 0.6548 -6.1868 -5.5615 35 1 -0.3873 -6.5770 -4.1706 36 1 -1.9832 -4.8600 -4.7956 37 1 -1.6412 -5.8189 -6.2553 38 1 -1.5548 -3.4813 -6.8892 39 1 0.1204 -4.0856 -6.8624 40 1 0.1418 -1.9672 -5.6987 41 1 -1.2895 -2.4139 -4.7337 42 1 3.9582 -4.3135 0.7977 43 1 3.5451 -2.6197 1.1560 44 1 2.9989 -6.1140 2.0419 45 1 1.8088 -6.8168 4.1082 46 1 0.5940 -5.0935 5.4260 47 1 0.6054 -2.7563 4.6506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593016795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:11 Heat of formation + Delta-G solvation = 95.808152 kcal Electronic energy + Delta-G solvation = -27808.292875 eV Core-core repulsion = 24184.624459 eV Total energy + Delta-G solvation = -3623.668416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.36530 -40.99271 -38.55818 -37.13057 -34.49473 -33.50252 -33.21115 -32.73681 -31.37601 -29.21194 -29.04092 -27.75130 -26.06619 -24.86161 -24.23023 -23.69056 -22.73029 -21.78703 -20.78242 -19.48598 -18.49927 -17.52010 -17.43188 -17.05750 -16.75752 -16.68104 -16.27781 -16.20411 -15.53069 -15.26066 -15.12193 -14.92499 -14.61685 -14.38323 -14.25284 -14.15542 -14.03861 -13.75852 -13.35682 -13.05050 -12.83181 -12.73224 -12.68520 -12.49168 -12.32130 -12.13224 -11.98611 -11.90671 -11.87108 -11.76778 -11.57972 -11.31365 -10.66038 -10.45416 -10.06750 -9.93600 -9.76752 -9.30857 -8.94223 -8.00937 -6.14177 0.31568 0.56338 1.00141 1.38155 1.39641 1.49007 1.71722 1.87844 2.45505 2.96657 3.26344 3.51744 3.53601 3.67831 3.79236 3.84441 3.88065 3.96316 4.06557 4.12119 4.32747 4.35513 4.40146 4.44536 4.49076 4.58166 4.61030 4.68763 4.80696 4.84087 4.88151 4.92240 4.94944 4.97827 5.04055 5.05251 5.16043 5.29754 5.34879 5.38279 5.39185 5.42319 5.51738 5.81257 5.89941 5.97641 6.14803 6.28571 6.32997 6.53834 6.92315 7.01059 7.36806 7.52417 9.03379 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009441 B = 0.004500 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.019017 B = 6220.783506 C = 8272.625581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.017 3.983 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.215 3.785 10 N -0.530 5.530 11 C 0.144 3.856 12 C 0.087 3.913 13 C -0.275 4.275 14 C 0.078 3.922 15 N -0.376 5.376 16 N -0.314 5.314 17 C 0.124 3.876 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.060 4.060 21 C 0.104 3.896 22 C 0.125 3.875 23 C -0.163 4.163 24 C -0.079 4.079 25 C -0.174 4.174 26 C 0.071 3.929 27 N -0.504 5.504 28 H 0.258 0.742 29 H 0.001 0.999 30 H 0.004 0.996 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.040 0.960 44 H 0.151 0.849 45 H 0.169 0.831 46 H 0.165 0.835 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 -13.444 -6.608 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.181 4.181 3 Si 0.771 3.229 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.070 0.930 9 C 0.089 3.911 10 N -0.254 5.254 11 C 0.015 3.985 12 C -0.079 4.079 13 C -0.305 4.305 14 C -0.049 4.049 15 N -0.160 5.160 16 N -0.137 5.137 17 C 0.004 3.996 18 C -0.168 4.168 19 C -0.153 4.153 20 C -0.099 4.099 21 C -0.024 4.024 22 C -0.012 4.012 23 C -0.184 4.184 24 C -0.104 4.104 25 C -0.194 4.194 26 C -0.087 4.087 27 N -0.214 5.214 28 H 0.067 0.933 29 H 0.019 0.981 30 H 0.022 0.978 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.140 0.860 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.058 0.942 44 H 0.169 0.831 45 H 0.187 0.813 46 H 0.183 0.817 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.439 -14.306 -6.837 15.862 hybrid contribution 0.523 2.315 0.629 2.456 sum 0.083 -11.990 -6.207 13.502 Atomic orbital electron populations 1.70097 1.07398 1.26893 1.52294 1.25588 0.95343 1.01969 0.95196 0.85758 0.78742 0.80206 0.78152 1.19884 1.21298 1.19665 1.21703 0.92698 0.92602 1.49268 0.92985 1.19267 0.90984 0.86063 0.94810 1.62400 1.17011 1.45741 1.00292 1.20206 0.92380 1.00444 0.85515 1.22178 0.98649 0.90178 0.96845 1.21040 1.06951 0.99958 1.02519 1.21370 0.99341 0.84887 0.99317 1.48890 1.34713 1.05288 1.27153 1.77044 1.10103 1.22479 1.04057 1.22121 0.94517 0.89356 0.93558 1.21982 0.95582 0.98750 1.00443 1.21668 1.03033 0.93787 0.96831 1.20593 0.97195 0.98814 0.93270 1.20916 0.93485 1.00515 0.87504 1.21255 0.94566 0.90583 0.94818 1.22174 1.01758 0.95913 0.98525 1.21955 0.93989 1.01285 0.93219 1.22420 1.01117 0.93447 1.02419 1.23103 0.96202 0.96789 0.92559 1.67577 1.07602 1.39980 1.06239 0.93336 0.98051 0.97794 0.89107 0.93341 0.86017 0.88506 0.89260 0.91896 0.85536 0.87711 0.90649 0.88479 0.89895 0.88058 0.94211 0.83141 0.81309 0.81736 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.02 1.02 5.46 84.65 0.46 1.48 16 3 Si 0.95 46.18 29.54 68.60 2.03 48.20 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.52 -30.12 7.34 25.60 0.19 -29.93 16 8 H 0.05 2.95 5.95 -2.91 -0.02 2.93 16 9 C 0.22 12.11 4.74 85.56 0.41 12.52 16 10 N -0.53 -24.68 4.65 -909.95 -4.23 -28.90 16 11 C 0.14 6.15 5.35 85.55 0.46 6.61 16 12 C 0.09 3.84 5.94 43.12 0.26 4.10 16 13 C -0.28 -12.08 9.60 21.91 0.21 -11.87 16 14 C 0.08 2.80 6.59 41.28 0.27 3.07 16 15 N -0.38 -12.91 4.04 -334.10 -1.35 -14.26 16 16 N -0.31 -12.99 12.62 -47.18 -0.60 -13.59 16 17 C 0.12 2.76 7.28 86.44 0.63 3.39 16 18 C -0.13 -2.07 5.93 30.73 0.18 -1.89 16 19 C -0.12 -1.88 5.97 30.80 0.18 -1.70 16 20 C -0.06 -1.52 6.29 30.05 0.19 -1.33 16 21 C 0.10 4.31 5.11 85.56 0.44 4.74 16 22 C 0.13 5.03 5.85 42.55 0.25 5.28 16 23 C -0.16 -5.07 9.72 22.36 0.22 -4.86 16 24 C -0.08 -1.99 10.18 22.47 0.23 -1.76 16 25 C -0.17 -4.64 10.11 22.36 0.23 -4.41 16 26 C 0.07 2.50 11.18 84.67 0.95 3.45 16 27 N -0.50 -22.32 9.03 -183.89 -1.66 -23.98 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.00 0.09 6.35 -2.38 -0.02 0.07 16 30 H 0.00 0.25 6.57 -2.39 -0.02 0.23 16 31 H 0.09 3.32 7.86 -2.38 -0.02 3.30 16 32 H 0.05 2.19 6.63 -2.39 -0.02 2.18 16 33 H 0.12 5.86 8.06 -2.91 -0.02 5.84 16 34 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 37 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 40 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.10 3.37 7.71 -2.39 -0.02 3.35 16 43 H 0.04 1.86 6.11 -2.39 -0.01 1.85 16 44 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 45 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 46 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 47 H 0.16 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -80.50 377.99 1.18 -79.32 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.96 Total: 23.66 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 5.74 Total: -13.12 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -7.55 Total: -138.07 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -80.50 1.18 -79.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593016795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.130 kcal (2) G-P(sol) polarization free energy of solvation -80.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds