Wall clock time and date at job start Tue Mar 31 2020 14:28:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81402 * 1
3 3 C 1.81397 * 103.00179 * 2 1
4 4 H 1.09000 * 109.47146 * 54.99477 * 3 2 1
5 5 C 1.53002 * 109.46531 * 294.99936 * 3 2 1
6 6 C 1.53007 * 109.46743 * 180.02562 * 5 3 2
7 7 C 1.53000 * 109.47226 * 60.00219 * 6 5 3
8 8 C 1.52997 * 109.46634 * 299.99795 * 7 6 5
9 9 C 1.52999 * 109.47464 * 60.00456 * 8 7 6
10 10 H 1.08995 * 109.47159 * 59.99367 * 9 8 7
11 11 N 1.46504 * 109.47224 * 179.97438 * 9 8 7
12 12 C 1.34777 * 119.99506 * 274.99323 * 11 9 8
13 13 O 1.21584 * 119.99990 * 355.01331 * 12 11 9
14 14 N 1.34778 * 119.99726 * 175.01049 * 12 11 9
15 15 C 1.46917 * 120.63098 * 184.94839 * 14 12 11
16 16 C 1.52760 * 109.00769 * 233.58037 * 15 14 12
17 17 C 1.53039 * 109.38719 * 305.58665 * 16 15 14
18 18 C 1.50696 * 109.46387 * 181.25905 * 17 16 15
19 19 H 1.07998 * 120.00027 * 239.93719 * 18 17 16
20 20 C 1.37875 * 120.00015 * 59.93170 * 18 17 16
21 21 N 1.31516 * 120.00141 * 359.97438 * 20 18 17
22 22 Si 1.86797 * 119.99899 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.47134 * 90.00347 * 22 20 18
24 24 H 1.48504 * 109.47070 * 210.00021 * 22 20 18
25 25 H 1.48497 * 109.47091 * 329.99768 * 22 20 18
26 26 C 1.53046 * 109.53615 * 61.23835 * 17 16 15
27 27 C 1.46929 * 120.62989 * 5.22024 * 14 12 11
28 28 H 1.08996 * 109.47197 * 60.00598 * 1 2 3
29 29 H 1.08999 * 109.46750 * 180.02562 * 1 2 3
30 30 H 1.08992 * 109.47004 * 299.99944 * 1 2 3
31 31 H 1.08996 * 109.47611 * 60.00250 * 5 3 2
32 32 H 1.09002 * 109.47760 * 299.99721 * 5 3 2
33 33 H 1.09000 * 109.47033 * 299.99602 * 6 5 3
34 34 H 1.09003 * 109.46851 * 180.02562 * 6 5 3
35 35 H 1.08997 * 109.46934 * 180.02562 * 7 6 5
36 36 H 1.08995 * 109.47203 * 59.99947 * 7 6 5
37 37 H 1.08995 * 109.47449 * 300.00000 * 8 7 6
38 38 H 1.09000 * 109.47095 * 180.02562 * 8 7 6
39 39 H 0.96995 * 119.99811 * 95.27727 * 11 9 8
40 40 H 1.08998 * 109.58668 * 353.41518 * 15 14 12
41 41 H 1.09005 * 109.58781 * 113.84116 * 15 14 12
42 42 H 1.09001 * 109.56707 * 185.54769 * 16 15 14
43 43 H 1.09001 * 109.38576 * 65.51694 * 16 15 14
44 44 H 1.08995 * 109.44951 * 301.23051 * 17 16 15
45 45 H 0.96992 * 120.00253 * 179.97438 * 21 20 18
46 46 H 1.08995 * 109.49856 * 178.68571 * 26 17 16
47 47 H 1.09001 * 109.52521 * 58.60261 * 26 17 16
48 48 H 1.08997 * 109.59200 * 246.16093 * 27 14 12
49 49 H 1.09003 * 109.58584 * 6.44519 * 27 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 1 1.7295 2.2541 0.8418
5 6 1.7428 2.4014 -1.3074
6 6 2.0876 3.8921 -1.3077
7 6 3.6026 4.0653 -1.1824
8 6 4.0818 3.4312 0.1250
9 6 3.7371 1.9406 0.1254
10 1 4.2294 1.4537 -0.7164
11 7 4.1965 1.3334 1.3770
12 6 5.4699 0.9068 1.4913
13 8 6.2116 0.9422 0.5286
14 7 5.9210 0.4410 2.6729
15 6 7.3334 0.0740 2.8429
16 6 7.4153 -1.3539 3.3795
17 6 6.5785 -1.4656 4.6560
18 6 6.6830 -2.8655 5.2040
19 1 5.7948 -3.4700 5.3142
20 6 7.9125 -3.3748 5.5645
21 7 8.9942 -2.6390 5.4297
22 14 8.0420 -5.1103 6.2430
23 1 8.2523 -6.0646 5.1248
24 1 9.1884 -5.1898 7.1837
25 1 6.7885 -5.4563 6.9600
26 6 5.1150 -1.1505 4.3379
27 6 5.0083 0.2851 3.8137
28 1 -0.3633 0.5137 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8899
31 1 0.6636 2.2778 -1.3970
32 1 2.2354 1.9148 -2.1493
33 1 1.5953 4.3791 -0.4660
34 1 1.7457 4.3439 -2.2390
35 1 3.8481 5.1272 -1.1822
36 1 4.0948 3.5783 -2.0242
37 1 3.5896 3.9182 0.9668
38 1 5.1610 3.5549 0.2146
39 1 3.5832 1.2347 2.1219
40 1 7.8441 0.1315 1.8817
41 1 7.8053 0.7552 3.5510
42 1 8.4532 -1.6012 3.6021
43 1 7.0294 -2.0448 2.6299
44 1 6.9497 -0.7572 5.3965
45 1 9.8591 -2.9971 5.6836
46 1 4.5158 -1.2530 5.2425
47 1 4.7499 -1.8428 3.5792
48 1 5.2867 0.9838 4.6027
49 1 3.9856 0.4842 3.4934
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000593435643.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:28:03
Heat of formation + Delta-G solvation = -49.245062 kcal
Electronic energy + Delta-G solvation = -26766.876203 eV
Core-core repulsion = 23240.069008 eV
Total energy + Delta-G solvation = -3526.807195 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.177 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.17927 -38.56833 -36.69144 -34.15566 -33.39122 -31.32224 -31.06134 -30.31085
-29.00878 -28.92355 -26.02829 -23.33053 -23.08269 -22.62841 -21.84169 -20.38189
-20.00864 -18.75882 -17.71482 -16.74149 -16.32526 -16.06009 -15.20213 -15.04012
-14.62694 -14.58105 -14.45428 -14.16625 -13.78175 -13.68667 -13.56276 -13.24822
-13.08272 -12.93833 -12.71292 -12.50247 -12.21331 -12.15719 -11.85832 -11.72145
-11.45770 -11.20651 -11.04408 -10.91548 -10.88962 -10.61594 -10.52597 -10.36011
-10.00519 -9.93052 -9.66462 -9.49497 -9.12274 -8.90296 -8.82832 -8.31964
-7.86377 -7.77852 -5.97252 -4.03688 1.44464 2.37750 3.02905 3.32075
3.38950 3.41522 3.64116 4.18775 4.24401 4.45174 4.50421 4.64375
4.75503 4.84711 4.91636 4.92745 4.99913 5.11503 5.18869 5.32427
5.36392 5.44721 5.48383 5.55735 5.71514 5.73582 5.79681 5.83177
5.84954 5.92300 6.05716 6.11086 6.16125 6.33586 6.50035 6.56762
6.69320 6.73224 6.89548 7.05707 7.22299 7.31974 7.56650 7.76656
7.99447 8.12049 8.39651 8.45975 8.99582 9.03987 9.61074 11.08111
Molecular weight = 326.18amu
Principal moments of inertia in cm(-1)
A = 0.019848 B = 0.003012 C = 0.002732
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1410.384901 B = 9295.303597 C =10248.253042
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 S -0.237 6.237
3 C -0.064 4.064
4 H 0.089 0.911
5 C -0.110 4.110
6 C -0.118 4.118
7 C -0.118 4.118
8 C -0.125 4.125
9 C 0.187 3.813
10 H 0.096 0.904
11 N -0.744 5.744
12 C 0.709 3.291
13 O -0.601 6.601
14 N -0.617 5.617
15 C 0.127 3.873
16 C -0.124 4.124
17 C 0.050 3.950
18 C -0.512 4.512
19 H 0.054 0.946
20 C 0.061 3.939
21 N -0.890 5.890
22 Si 0.890 3.110
23 H -0.281 1.281
24 H -0.287 1.287
25 H -0.275 1.275
26 C -0.123 4.123
27 C 0.114 3.886
28 H 0.074 0.926
29 H 0.100 0.900
30 H 0.074 0.926
31 H 0.066 0.934
32 H 0.079 0.921
33 H 0.062 0.938
34 H 0.067 0.933
35 H 0.066 0.934
36 H 0.067 0.933
37 H 0.063 0.937
38 H 0.076 0.924
39 H 0.396 0.604
40 H 0.075 0.925
41 H 0.055 0.945
42 H 0.103 0.897
43 H 0.037 0.963
44 H 0.026 0.974
45 H 0.260 0.740
46 H 0.058 0.942
47 H 0.053 0.947
48 H 0.060 0.940
49 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.921 13.811 -11.041 24.474
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.298 4.298
2 S -0.008 6.008
3 C -0.194 4.194
4 H 0.107 0.893
5 C -0.150 4.150
6 C -0.157 4.157
7 C -0.156 4.156
8 C -0.165 4.165
9 C 0.080 3.920
10 H 0.114 0.886
11 N -0.402 5.402
12 C 0.410 3.590
13 O -0.480 6.480
14 N -0.353 5.353
15 C 0.005 3.995
16 C -0.162 4.162
17 C 0.032 3.968
18 C -0.550 4.550
19 H 0.072 0.928
20 C -0.140 4.140
21 N -0.529 5.529
22 Si 0.718 3.282
23 H -0.207 1.207
24 H -0.213 1.213
25 H -0.200 1.200
26 C -0.161 4.161
27 C -0.009 4.009
28 H 0.093 0.907
29 H 0.119 0.881
30 H 0.093 0.907
31 H 0.084 0.916
32 H 0.097 0.903
33 H 0.081 0.919
34 H 0.086 0.914
35 H 0.085 0.915
36 H 0.086 0.914
37 H 0.082 0.918
38 H 0.094 0.906
39 H 0.232 0.768
40 H 0.094 0.906
41 H 0.073 0.927
42 H 0.121 0.879
43 H 0.056 0.944
44 H 0.044 0.956
45 H 0.070 0.930
46 H 0.077 0.923
47 H 0.072 0.928
48 H 0.079 0.921
49 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -15.496 12.892 -11.656 23.285
hybrid contribution -1.157 -0.102 0.880 1.457
sum -16.653 12.790 -10.776 23.602
Atomic orbital electron populations
1.23430 0.95389 1.06433 1.04584 1.87512 1.05755 1.09721 1.97768
1.23583 0.99436 0.94647 1.01690 0.89269 1.21841 1.00983 0.96001
0.96188 1.21593 0.96589 0.95422 1.02078 1.21522 0.95333 1.00850
0.97927 1.21964 1.02401 0.94337 0.97837 1.20419 0.89896 0.93421
0.88279 0.88624 1.45287 1.11487 1.66701 1.16694 1.15802 0.81736
0.77996 0.83441 1.90852 1.56572 1.63338 1.37275 1.47420 1.11138
1.66929 1.09822 1.21657 0.78565 0.98397 1.00843 1.21942 1.05119
0.91529 0.97654 1.18611 0.88415 0.96662 0.93114 1.21192 0.93057
0.99160 1.41614 0.92789 1.24960 0.95940 0.97422 0.95664 1.69845
0.98361 1.36432 1.48286 0.86629 0.77557 0.85130 0.78875 1.20749
1.21289 1.20018 1.22001 1.01406 0.93135 0.99595 1.21689 0.91507
0.99408 0.88281 0.90675 0.88149 0.90678 0.91555 0.90265 0.91878
0.91436 0.91498 0.91399 0.91793 0.90561 0.76757 0.90608 0.92702
0.87905 0.94378 0.95562 0.92999 0.92290 0.92802 0.92132 0.92270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.98 10.45 101.05 1.06 0.08 16
2 S -0.24 -2.67 21.37 -107.50 -2.30 -4.97 16
3 C -0.06 -0.60 2.21 -26.73 -0.06 -0.66 16
4 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16
5 C -0.11 -0.82 5.11 -26.73 -0.14 -0.96 16
6 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16
7 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16
8 C -0.12 -1.28 5.49 -26.73 -0.15 -1.43 16
9 C 0.19 2.23 1.94 -67.93 -0.13 2.10 16
10 H 0.10 1.41 7.51 -51.93 -0.39 1.02 16
11 N -0.74 -10.46 4.53 -58.68 -0.27 -10.72 16
12 C 0.71 13.07 8.26 -86.92 -0.72 12.35 16
13 O -0.60 -13.08 15.39 5.29 0.08 -13.00 16
14 N -0.62 -11.56 2.98 -178.76 -0.53 -12.09 16
15 C 0.13 2.65 6.41 -3.94 -0.03 2.62 16
16 C -0.12 -2.95 5.14 -26.83 -0.14 -3.09 16
17 C 0.05 1.22 2.07 -91.73 -0.19 1.03 16
18 C -0.51 -13.86 8.56 -34.44 -0.29 -14.15 16
19 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16
20 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16
21 N -0.89 -25.10 11.30 55.43 0.63 -24.47 16
22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16
23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16
25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
26 C -0.12 -2.45 5.30 -26.60 -0.14 -2.59 16
27 C 0.11 1.90 6.39 -3.71 -0.02 1.87 16
28 H 0.07 0.47 7.14 -51.93 -0.37 0.10 16
29 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16
30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
31 H 0.07 0.42 6.92 -51.93 -0.36 0.06 16
32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
39 H 0.40 4.93 6.09 -40.82 -0.25 4.68 16
40 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16
41 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16
42 H 0.10 2.72 6.03 -51.93 -0.31 2.40 16
43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16
44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16
45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
46 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
48 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
49 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16
LS Contribution 383.56 15.07 5.78 5.78
Total: -1.00 -30.77 383.56 -11.63 -42.40
By element:
Atomic # 1 Polarization: 12.73 SS G_CDS: -8.64 Total: 4.09 kcal
Atomic # 6 Polarization: -1.90 SS G_CDS: -1.36 Total: -3.26 kcal
Atomic # 7 Polarization: -47.12 SS G_CDS: -0.17 Total: -47.29 kcal
Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal
Atomic # 16 Polarization: -2.67 SS G_CDS: -2.30 Total: -4.97 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -30.77 -11.63 -42.40 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000593435643.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.847 kcal
(2) G-P(sol) polarization free energy of solvation -30.767 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.614 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.245 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds