Wall clock time and date at job start Tue Mar 31 2020 14:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 103.00179 * 2 1 4 4 H 1.09000 * 109.47146 * 54.99477 * 3 2 1 5 5 C 1.53002 * 109.46531 * 294.99936 * 3 2 1 6 6 C 1.53007 * 109.46743 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47226 * 60.00219 * 6 5 3 8 8 C 1.52997 * 109.46634 * 299.99795 * 7 6 5 9 9 C 1.52999 * 109.47464 * 60.00456 * 8 7 6 10 10 H 1.08995 * 109.47159 * 59.99367 * 9 8 7 11 11 N 1.46504 * 109.47224 * 179.97438 * 9 8 7 12 12 C 1.34777 * 119.99506 * 274.99323 * 11 9 8 13 13 O 1.21584 * 119.99990 * 355.01331 * 12 11 9 14 14 N 1.34778 * 119.99726 * 175.01049 * 12 11 9 15 15 C 1.46917 * 120.63098 * 184.94839 * 14 12 11 16 16 C 1.52760 * 109.00769 * 233.58037 * 15 14 12 17 17 C 1.53039 * 109.38719 * 305.58665 * 16 15 14 18 18 C 1.50696 * 109.46387 * 181.25905 * 17 16 15 19 19 H 1.07998 * 120.00027 * 239.93719 * 18 17 16 20 20 C 1.37875 * 120.00015 * 59.93170 * 18 17 16 21 21 N 1.31516 * 120.00141 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99899 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47134 * 90.00347 * 22 20 18 24 24 H 1.48504 * 109.47070 * 210.00021 * 22 20 18 25 25 H 1.48497 * 109.47091 * 329.99768 * 22 20 18 26 26 C 1.53046 * 109.53615 * 61.23835 * 17 16 15 27 27 C 1.46929 * 120.62989 * 5.22024 * 14 12 11 28 28 H 1.08996 * 109.47197 * 60.00598 * 1 2 3 29 29 H 1.08999 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47004 * 299.99944 * 1 2 3 31 31 H 1.08996 * 109.47611 * 60.00250 * 5 3 2 32 32 H 1.09002 * 109.47760 * 299.99721 * 5 3 2 33 33 H 1.09000 * 109.47033 * 299.99602 * 6 5 3 34 34 H 1.09003 * 109.46851 * 180.02562 * 6 5 3 35 35 H 1.08997 * 109.46934 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47203 * 59.99947 * 7 6 5 37 37 H 1.08995 * 109.47449 * 300.00000 * 8 7 6 38 38 H 1.09000 * 109.47095 * 180.02562 * 8 7 6 39 39 H 0.96995 * 119.99811 * 95.27727 * 11 9 8 40 40 H 1.08998 * 109.58668 * 353.41518 * 15 14 12 41 41 H 1.09005 * 109.58781 * 113.84116 * 15 14 12 42 42 H 1.09001 * 109.56707 * 185.54769 * 16 15 14 43 43 H 1.09001 * 109.38576 * 65.51694 * 16 15 14 44 44 H 1.08995 * 109.44951 * 301.23051 * 17 16 15 45 45 H 0.96992 * 120.00253 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.49856 * 178.68571 * 26 17 16 47 47 H 1.09001 * 109.52521 * 58.60261 * 26 17 16 48 48 H 1.08997 * 109.59200 * 246.16093 * 27 14 12 49 49 H 1.09003 * 109.58584 * 6.44519 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4014 -1.3074 6 6 2.0876 3.8921 -1.3077 7 6 3.6026 4.0653 -1.1824 8 6 4.0818 3.4312 0.1250 9 6 3.7371 1.9406 0.1254 10 1 4.2294 1.4537 -0.7164 11 7 4.1965 1.3334 1.3770 12 6 5.4699 0.9068 1.4913 13 8 6.2116 0.9422 0.5286 14 7 5.9210 0.4410 2.6729 15 6 7.3334 0.0740 2.8429 16 6 7.4153 -1.3539 3.3795 17 6 6.5785 -1.4656 4.6560 18 6 6.6830 -2.8655 5.2040 19 1 5.7948 -3.4700 5.3142 20 6 7.9125 -3.3748 5.5645 21 7 8.9942 -2.6390 5.4297 22 14 8.0420 -5.1103 6.2430 23 1 8.2523 -6.0646 5.1248 24 1 9.1884 -5.1898 7.1837 25 1 6.7885 -5.4563 6.9600 26 6 5.1150 -1.1505 4.3379 27 6 5.0083 0.2851 3.8137 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.6636 2.2778 -1.3970 32 1 2.2354 1.9148 -2.1493 33 1 1.5953 4.3791 -0.4660 34 1 1.7457 4.3439 -2.2390 35 1 3.8481 5.1272 -1.1822 36 1 4.0948 3.5783 -2.0242 37 1 3.5896 3.9182 0.9668 38 1 5.1610 3.5549 0.2146 39 1 3.5832 1.2347 2.1219 40 1 7.8441 0.1315 1.8817 41 1 7.8053 0.7552 3.5510 42 1 8.4532 -1.6012 3.6021 43 1 7.0294 -2.0448 2.6299 44 1 6.9497 -0.7572 5.3965 45 1 9.8591 -2.9971 5.6836 46 1 4.5158 -1.2530 5.2425 47 1 4.7499 -1.8428 3.5792 48 1 5.2867 0.9838 4.6027 49 1 3.9856 0.4842 3.4934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593435643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:03 Heat of formation + Delta-G solvation = -49.245062 kcal Electronic energy + Delta-G solvation = -26766.876203 eV Core-core repulsion = 23240.069008 eV Total energy + Delta-G solvation = -3526.807195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17927 -38.56833 -36.69144 -34.15566 -33.39122 -31.32224 -31.06134 -30.31085 -29.00878 -28.92355 -26.02829 -23.33053 -23.08269 -22.62841 -21.84169 -20.38189 -20.00864 -18.75882 -17.71482 -16.74149 -16.32526 -16.06009 -15.20213 -15.04012 -14.62694 -14.58105 -14.45428 -14.16625 -13.78175 -13.68667 -13.56276 -13.24822 -13.08272 -12.93833 -12.71292 -12.50247 -12.21331 -12.15719 -11.85832 -11.72145 -11.45770 -11.20651 -11.04408 -10.91548 -10.88962 -10.61594 -10.52597 -10.36011 -10.00519 -9.93052 -9.66462 -9.49497 -9.12274 -8.90296 -8.82832 -8.31964 -7.86377 -7.77852 -5.97252 -4.03688 1.44464 2.37750 3.02905 3.32075 3.38950 3.41522 3.64116 4.18775 4.24401 4.45174 4.50421 4.64375 4.75503 4.84711 4.91636 4.92745 4.99913 5.11503 5.18869 5.32427 5.36392 5.44721 5.48383 5.55735 5.71514 5.73582 5.79681 5.83177 5.84954 5.92300 6.05716 6.11086 6.16125 6.33586 6.50035 6.56762 6.69320 6.73224 6.89548 7.05707 7.22299 7.31974 7.56650 7.76656 7.99447 8.12049 8.39651 8.45975 8.99582 9.03987 9.61074 11.08111 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.003012 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.384901 B = 9295.303597 C =10248.253042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.237 6.237 3 C -0.064 4.064 4 H 0.089 0.911 5 C -0.110 4.110 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.125 4.125 9 C 0.187 3.813 10 H 0.096 0.904 11 N -0.744 5.744 12 C 0.709 3.291 13 O -0.601 6.601 14 N -0.617 5.617 15 C 0.127 3.873 16 C -0.124 4.124 17 C 0.050 3.950 18 C -0.512 4.512 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.123 4.123 27 C 0.114 3.886 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.396 0.604 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.037 0.963 44 H 0.026 0.974 45 H 0.260 0.740 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.060 0.940 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.921 13.811 -11.041 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.008 6.008 3 C -0.194 4.194 4 H 0.107 0.893 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.165 4.165 9 C 0.080 3.920 10 H 0.114 0.886 11 N -0.402 5.402 12 C 0.410 3.590 13 O -0.480 6.480 14 N -0.353 5.353 15 C 0.005 3.995 16 C -0.162 4.162 17 C 0.032 3.968 18 C -0.550 4.550 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.161 4.161 27 C -0.009 4.009 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.232 0.768 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.496 12.892 -11.656 23.285 hybrid contribution -1.157 -0.102 0.880 1.457 sum -16.653 12.790 -10.776 23.602 Atomic orbital electron populations 1.23430 0.95389 1.06433 1.04584 1.87512 1.05755 1.09721 1.97768 1.23583 0.99436 0.94647 1.01690 0.89269 1.21841 1.00983 0.96001 0.96188 1.21593 0.96589 0.95422 1.02078 1.21522 0.95333 1.00850 0.97927 1.21964 1.02401 0.94337 0.97837 1.20419 0.89896 0.93421 0.88279 0.88624 1.45287 1.11487 1.66701 1.16694 1.15802 0.81736 0.77996 0.83441 1.90852 1.56572 1.63338 1.37275 1.47420 1.11138 1.66929 1.09822 1.21657 0.78565 0.98397 1.00843 1.21942 1.05119 0.91529 0.97654 1.18611 0.88415 0.96662 0.93114 1.21192 0.93057 0.99160 1.41614 0.92789 1.24960 0.95940 0.97422 0.95664 1.69845 0.98361 1.36432 1.48286 0.86629 0.77557 0.85130 0.78875 1.20749 1.21289 1.20018 1.22001 1.01406 0.93135 0.99595 1.21689 0.91507 0.99408 0.88281 0.90675 0.88149 0.90678 0.91555 0.90265 0.91878 0.91436 0.91498 0.91399 0.91793 0.90561 0.76757 0.90608 0.92702 0.87905 0.94378 0.95562 0.92999 0.92290 0.92802 0.92132 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 10.45 101.05 1.06 0.08 16 2 S -0.24 -2.67 21.37 -107.50 -2.30 -4.97 16 3 C -0.06 -0.60 2.21 -26.73 -0.06 -0.66 16 4 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 5 C -0.11 -0.82 5.11 -26.73 -0.14 -0.96 16 6 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 7 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 8 C -0.12 -1.28 5.49 -26.73 -0.15 -1.43 16 9 C 0.19 2.23 1.94 -67.93 -0.13 2.10 16 10 H 0.10 1.41 7.51 -51.93 -0.39 1.02 16 11 N -0.74 -10.46 4.53 -58.68 -0.27 -10.72 16 12 C 0.71 13.07 8.26 -86.92 -0.72 12.35 16 13 O -0.60 -13.08 15.39 5.29 0.08 -13.00 16 14 N -0.62 -11.56 2.98 -178.76 -0.53 -12.09 16 15 C 0.13 2.65 6.41 -3.94 -0.03 2.62 16 16 C -0.12 -2.95 5.14 -26.83 -0.14 -3.09 16 17 C 0.05 1.22 2.07 -91.73 -0.19 1.03 16 18 C -0.51 -13.86 8.56 -34.44 -0.29 -14.15 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 21 N -0.89 -25.10 11.30 55.43 0.63 -24.47 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.12 -2.45 5.30 -26.60 -0.14 -2.59 16 27 C 0.11 1.90 6.39 -3.71 -0.02 1.87 16 28 H 0.07 0.47 7.14 -51.93 -0.37 0.10 16 29 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.42 6.92 -51.93 -0.36 0.06 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 4.93 6.09 -40.82 -0.25 4.68 16 40 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.10 2.72 6.03 -51.93 -0.31 2.40 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -30.77 383.56 -11.63 -42.40 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.64 Total: 4.09 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.36 Total: -3.26 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.17 Total: -47.29 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.30 Total: -4.97 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.77 -11.63 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593435643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.847 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds