Wall clock time and date at job start Tue Mar 31 2020 14:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 103.00179 * 2 1 4 4 H 1.09000 * 109.47146 * 54.99477 * 3 2 1 5 5 C 1.53002 * 109.46531 * 294.99936 * 3 2 1 6 6 C 1.53007 * 109.46743 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47226 * 60.00219 * 6 5 3 8 8 C 1.52997 * 109.46634 * 299.99795 * 7 6 5 9 9 C 1.52999 * 109.47464 * 60.00456 * 8 7 6 10 10 H 1.08995 * 109.47159 * 59.99367 * 9 8 7 11 11 N 1.46504 * 109.47224 * 179.97438 * 9 8 7 12 12 C 1.34777 * 119.99506 * 274.99323 * 11 9 8 13 13 O 1.21584 * 119.99990 * 355.01331 * 12 11 9 14 14 N 1.34778 * 119.99726 * 175.01049 * 12 11 9 15 15 C 1.46917 * 120.63098 * 184.94839 * 14 12 11 16 16 C 1.52760 * 109.00769 * 233.58037 * 15 14 12 17 17 C 1.53039 * 109.38719 * 305.58665 * 16 15 14 18 18 C 1.50696 * 109.46387 * 181.25905 * 17 16 15 19 19 H 1.07998 * 120.00027 * 239.93719 * 18 17 16 20 20 C 1.37875 * 120.00015 * 59.93170 * 18 17 16 21 21 N 1.31516 * 120.00141 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99899 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47134 * 90.00347 * 22 20 18 24 24 H 1.48504 * 109.47070 * 210.00021 * 22 20 18 25 25 H 1.48497 * 109.47091 * 329.99768 * 22 20 18 26 26 C 1.53046 * 109.53615 * 61.23835 * 17 16 15 27 27 C 1.46929 * 120.62989 * 5.22024 * 14 12 11 28 28 H 1.08996 * 109.47197 * 60.00598 * 1 2 3 29 29 H 1.08999 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47004 * 299.99944 * 1 2 3 31 31 H 1.08996 * 109.47611 * 60.00250 * 5 3 2 32 32 H 1.09002 * 109.47760 * 299.99721 * 5 3 2 33 33 H 1.09000 * 109.47033 * 299.99602 * 6 5 3 34 34 H 1.09003 * 109.46851 * 180.02562 * 6 5 3 35 35 H 1.08997 * 109.46934 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47203 * 59.99947 * 7 6 5 37 37 H 1.08995 * 109.47449 * 300.00000 * 8 7 6 38 38 H 1.09000 * 109.47095 * 180.02562 * 8 7 6 39 39 H 0.96995 * 119.99811 * 95.27727 * 11 9 8 40 40 H 1.08998 * 109.58668 * 353.41518 * 15 14 12 41 41 H 1.09005 * 109.58781 * 113.84116 * 15 14 12 42 42 H 1.09001 * 109.56707 * 185.54769 * 16 15 14 43 43 H 1.09001 * 109.38576 * 65.51694 * 16 15 14 44 44 H 1.08995 * 109.44951 * 301.23051 * 17 16 15 45 45 H 0.96992 * 120.00253 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.49856 * 178.68571 * 26 17 16 47 47 H 1.09001 * 109.52521 * 58.60261 * 26 17 16 48 48 H 1.08997 * 109.59200 * 246.16093 * 27 14 12 49 49 H 1.09003 * 109.58584 * 6.44519 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4014 -1.3074 6 6 2.0876 3.8921 -1.3077 7 6 3.6026 4.0653 -1.1824 8 6 4.0818 3.4312 0.1250 9 6 3.7371 1.9406 0.1254 10 1 4.2294 1.4537 -0.7164 11 7 4.1965 1.3334 1.3770 12 6 5.4699 0.9068 1.4913 13 8 6.2116 0.9422 0.5286 14 7 5.9210 0.4410 2.6729 15 6 7.3334 0.0740 2.8429 16 6 7.4153 -1.3539 3.3795 17 6 6.5785 -1.4656 4.6560 18 6 6.6830 -2.8655 5.2040 19 1 5.7948 -3.4700 5.3142 20 6 7.9125 -3.3748 5.5645 21 7 8.9942 -2.6390 5.4297 22 14 8.0420 -5.1103 6.2430 23 1 8.2523 -6.0646 5.1248 24 1 9.1884 -5.1898 7.1837 25 1 6.7885 -5.4563 6.9600 26 6 5.1150 -1.1505 4.3379 27 6 5.0083 0.2851 3.8137 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.6636 2.2778 -1.3970 32 1 2.2354 1.9148 -2.1493 33 1 1.5953 4.3791 -0.4660 34 1 1.7457 4.3439 -2.2390 35 1 3.8481 5.1272 -1.1822 36 1 4.0948 3.5783 -2.0242 37 1 3.5896 3.9182 0.9668 38 1 5.1610 3.5549 0.2146 39 1 3.5832 1.2347 2.1219 40 1 7.8441 0.1315 1.8817 41 1 7.8053 0.7552 3.5510 42 1 8.4532 -1.6012 3.6021 43 1 7.0294 -2.0448 2.6299 44 1 6.9497 -0.7572 5.3965 45 1 9.8591 -2.9971 5.6836 46 1 4.5158 -1.2530 5.2425 47 1 4.7499 -1.8428 3.5792 48 1 5.2867 0.9838 4.6027 49 1 3.9856 0.4842 3.4934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593435643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:02 Heat of formation + Delta-G solvation = -65.829365 kcal Electronic energy + Delta-G solvation = -26767.595353 eV Core-core repulsion = 23240.069008 eV Total energy + Delta-G solvation = -3527.526344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53205 -39.61145 -38.25552 -35.51454 -35.08582 -32.88370 -32.02051 -31.86793 -30.05308 -29.58255 -27.87817 -24.90530 -24.07797 -23.82980 -23.15906 -21.62625 -21.15765 -20.22666 -19.15074 -18.31892 -17.73733 -17.23856 -16.55051 -16.50638 -16.05341 -15.50316 -15.34711 -15.30458 -14.98371 -14.81893 -14.67970 -14.39942 -14.26883 -14.22387 -13.92247 -13.83514 -13.62026 -13.39912 -12.99378 -12.84653 -12.81302 -12.56967 -12.46074 -12.23831 -12.14538 -11.96925 -11.86413 -11.56503 -11.42364 -11.31250 -11.21737 -10.92433 -10.78684 -10.67925 -10.40360 -10.12918 -9.37821 -8.67874 -8.06727 -6.20532 0.70951 1.41006 1.42725 1.51748 1.67706 1.71116 2.17797 2.44320 2.93089 3.19661 3.44375 3.76567 3.96349 4.05700 4.10947 4.18980 4.22976 4.28359 4.34085 4.37537 4.38450 4.41891 4.43144 4.50875 4.60712 4.72666 4.77063 4.86216 4.90872 4.92807 4.98728 4.99619 5.12695 5.14527 5.20451 5.23135 5.24089 5.31474 5.45589 5.48364 5.52075 5.58226 5.66955 5.99042 6.07881 6.12743 6.39701 6.90619 7.02228 7.47299 7.59576 8.96727 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.003012 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.384901 B = 9295.303597 C =10248.253042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.320 6.320 3 C -0.042 4.042 4 H 0.110 0.890 5 C -0.107 4.107 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.119 4.119 9 C 0.185 3.815 10 H 0.061 0.939 11 N -0.726 5.726 12 C 0.705 3.295 13 O -0.640 6.640 14 N -0.621 5.621 15 C 0.140 3.860 16 C -0.111 4.111 17 C 0.048 3.952 18 C -0.532 4.532 19 H 0.051 0.949 20 C 0.013 3.987 21 N -0.915 5.915 22 Si 0.950 3.050 23 H -0.282 1.282 24 H -0.283 1.283 25 H -0.267 1.267 26 C -0.115 4.115 27 C 0.120 3.880 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.406 0.594 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.015 0.985 44 H 0.006 0.994 45 H 0.260 0.740 46 H 0.074 0.926 47 H 0.040 0.960 48 H 0.077 0.923 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.163 15.334 -10.803 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.091 6.091 3 C -0.171 4.171 4 H 0.128 0.872 5 C -0.147 4.147 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.159 4.159 9 C 0.078 3.922 10 H 0.079 0.921 11 N -0.383 5.383 12 C 0.407 3.593 13 O -0.522 6.522 14 N -0.357 5.357 15 C 0.017 3.983 16 C -0.150 4.150 17 C 0.029 3.971 18 C -0.570 4.570 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.555 5.555 22 Si 0.776 3.224 23 H -0.208 1.208 24 H -0.209 1.209 25 H -0.191 1.191 26 C -0.153 4.153 27 C -0.002 4.002 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.245 0.755 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.034 0.966 44 H 0.025 0.975 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.798 14.432 -11.411 26.303 hybrid contribution -0.163 -0.597 0.773 0.990 sum -18.961 13.835 -10.638 25.770 Atomic orbital electron populations 1.23432 0.91110 1.07096 1.06113 1.87828 1.10616 1.12691 1.98005 1.23502 0.97045 0.92917 1.03649 0.87165 1.21848 1.01975 0.96404 0.94437 1.21570 0.95040 0.94664 1.03665 1.21524 0.96693 1.01237 0.95979 1.21899 1.00796 0.93221 1.00003 1.20554 0.91694 0.93973 0.85954 0.92123 1.45173 1.09810 1.65532 1.17805 1.15961 0.82785 0.77919 0.82648 1.90825 1.58009 1.64839 1.38532 1.47371 1.10505 1.67100 1.10747 1.21308 0.80356 0.96538 1.00123 1.21705 1.03151 0.93018 0.97172 1.18578 0.91264 0.94941 0.92278 1.21582 0.93071 1.00605 1.41771 0.93053 1.25709 0.95769 1.01021 0.96098 1.69974 0.98659 1.37926 1.48910 0.85679 0.77804 0.80711 0.78186 1.20775 1.20859 1.19121 1.21852 0.98336 0.95099 1.00019 1.21773 0.93050 0.97432 0.87972 0.88994 0.87960 0.89193 0.89502 0.91678 0.90303 0.89770 0.90091 0.92689 0.89941 0.93526 0.75509 0.91743 0.91936 0.90844 0.96591 0.97544 0.93058 0.90774 0.94117 0.90465 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.45 113.37 1.19 -0.14 16 2 S -0.32 -6.82 21.37 -56.49 -1.21 -8.03 16 3 C -0.04 -0.69 2.21 30.60 0.07 -0.62 16 4 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.11 -1.30 5.11 30.60 0.16 -1.14 16 6 C -0.11 -1.05 5.92 30.60 0.18 -0.87 16 7 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 8 C -0.12 -2.29 5.49 30.59 0.17 -2.12 16 9 C 0.18 4.28 1.94 44.99 0.09 4.37 16 10 H 0.06 1.86 7.51 -2.39 -0.02 1.85 16 11 N -0.73 -19.69 4.53 -457.81 -2.07 -21.76 16 12 C 0.71 26.16 8.26 179.05 1.48 27.64 16 13 O -0.64 -28.85 15.39 -3.98 -0.06 -28.91 16 14 N -0.62 -23.20 2.98 -837.74 -2.49 -25.70 16 15 C 0.14 6.00 6.41 86.22 0.55 6.55 16 16 C -0.11 -5.54 5.14 30.53 0.16 -5.38 16 17 C 0.05 2.36 2.07 -11.51 -0.02 2.34 16 18 C -0.53 -29.26 8.56 25.60 0.22 -29.04 16 19 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 20 C 0.01 0.70 5.30 84.65 0.45 1.15 16 21 N -0.92 -52.90 11.30 21.45 0.24 -52.65 16 22 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C -0.11 -4.48 5.30 30.68 0.16 -4.32 16 27 C 0.12 3.76 6.39 86.36 0.55 4.31 16 28 H 0.09 0.81 7.14 -2.39 -0.02 0.79 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.75 6.92 -2.39 -0.02 0.73 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.41 9.14 6.09 -92.71 -0.56 8.58 16 40 H 0.06 2.89 6.99 -2.39 -0.02 2.88 16 41 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.07 4.08 6.03 -2.39 -0.01 4.06 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 46 H 0.07 2.66 8.14 -2.39 -0.02 2.65 16 47 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.10 2.31 5.64 -2.39 -0.01 2.30 16 Total: -1.00 -70.21 383.56 2.36 -67.84 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.36 Total: 21.87 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.57 Total: 1.27 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -4.32 Total: -100.11 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.06 Total: -28.91 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -6.82 SS G_CDS: -1.21 Total: -8.03 kcal Total: -70.21 2.36 -67.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593435643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.015 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds