Wall clock time and date at job start Tue Mar 31 2020 14:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99569 * 2 1 4 4 C 1.38735 * 120.05354 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94458 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05509 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94601 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47131 * 19.99616 * 7 6 5 9 9 N 1.46898 * 109.47684 * 140.00012 * 7 6 5 10 10 C 1.46893 * 111.00152 * 205.00165 * 9 7 6 11 11 C 1.53005 * 109.47281 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47158 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46883 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99993 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99807 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00261 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99810 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47559 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47411 * 119.99731 * 17 15 13 20 20 H 1.48502 * 109.46904 * 239.99398 * 17 15 13 21 21 C 1.50707 * 109.46939 * 260.00415 * 7 6 5 22 22 C 1.38227 * 119.62059 * 125.01917 * 21 7 6 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 7 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 304.99347 * 21 7 6 27 27 C 1.38271 * 120.11202 * 0.27502 * 6 5 4 28 28 C 1.38140 * 120.05275 * 359.45170 * 27 6 5 29 29 H 1.09005 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47266 * 299.99253 * 1 2 3 31 31 H 1.09003 * 109.47885 * 59.99384 * 1 2 3 32 32 H 1.08005 * 120.02335 * 359.96251 * 4 3 2 33 33 H 1.08004 * 119.97319 * 180.02562 * 5 4 3 34 34 H 1.00905 * 110.99376 * 328.95556 * 9 7 6 35 35 H 1.09001 * 109.47241 * 299.99673 * 10 9 7 36 36 H 1.09005 * 109.47287 * 59.99629 * 10 9 7 37 37 H 1.09001 * 109.46999 * 300.00168 * 11 10 9 38 38 H 1.08995 * 109.46458 * 59.99864 * 11 10 9 39 39 H 1.08999 * 109.47113 * 300.00478 * 12 11 10 40 40 H 1.08998 * 109.46913 * 60.00407 * 12 11 10 41 41 H 0.96992 * 120.00188 * 179.97438 * 16 15 13 42 42 H 1.07997 * 120.41915 * 359.97438 * 22 21 7 43 43 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 44 44 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 45 45 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 46 46 H 1.08005 * 119.96991 * 179.70820 * 27 6 5 47 47 H 1.08007 * 120.02778 * 180.27708 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9858 5.0186 -0.0028 8 1 5.0111 4.9038 -0.3545 9 7 3.2625 5.9360 -0.8934 10 6 4.1500 6.9955 -1.3911 11 6 3.3629 7.9286 -2.3135 12 6 4.2871 9.0325 -2.8314 13 6 3.5117 9.9518 -3.7395 14 1 2.4646 9.7670 -3.9286 15 6 4.1393 11.0283 -4.3296 16 7 5.4145 11.2532 -4.0996 17 14 3.1783 12.1675 -5.4557 18 1 1.7720 11.6997 -5.5501 19 1 3.2058 13.5465 -4.9055 20 1 3.7932 12.1616 -6.8074 21 6 3.9946 5.5791 1.3962 22 6 5.1927 5.9544 1.9743 23 6 5.1890 6.4739 3.2596 24 6 3.9761 6.5876 3.9220 25 6 2.8183 6.1920 3.2797 26 7 2.8590 5.7063 2.0542 27 6 1.9209 3.6048 0.0041 28 6 1.2914 2.3751 -0.0010 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 4.0208 0.3800 -0.0003 33 1 5.1344 2.5752 -0.0019 34 1 2.8335 5.4352 -1.6571 35 1 4.5444 7.5644 -0.5491 36 1 4.9749 6.5479 -1.9455 37 1 2.9687 7.3595 -3.1555 38 1 2.5379 8.3761 -1.7594 39 1 4.6809 9.6014 -1.9892 40 1 5.1123 8.5852 -3.3854 41 1 5.8561 12.0102 -4.5151 42 1 6.1195 5.8479 1.4302 43 1 6.1095 6.7790 3.7352 44 1 3.9362 6.9847 4.9256 45 1 1.8693 6.2812 3.7872 46 1 1.3340 4.5114 0.0085 47 1 0.2128 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593705304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:20 Heat of formation + Delta-G solvation = 14.804420 kcal Electronic energy + Delta-G solvation = -26529.540294 eV Core-core repulsion = 22870.066542 eV Total energy + Delta-G solvation = -3659.473752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59283 -39.94519 -38.03674 -36.16974 -33.85060 -32.45644 -32.10838 -31.17430 -30.57217 -29.94196 -27.72859 -26.35362 -24.96784 -23.56946 -22.79860 -22.71366 -21.84297 -20.63820 -20.02171 -18.29040 -16.97515 -16.63112 -16.24302 -16.07358 -15.95830 -15.92754 -15.45364 -14.88213 -14.51710 -14.38745 -14.17805 -13.90229 -13.66477 -13.51152 -13.30867 -13.03395 -12.98042 -12.67241 -12.24964 -12.20158 -12.00558 -11.64812 -11.42676 -11.27239 -11.10693 -10.90473 -10.81409 -10.55282 -10.45953 -9.83227 -9.67939 -9.35965 -9.34884 -9.06257 -9.03793 -8.95319 -8.32419 -8.22170 -8.17017 -5.97450 -3.99138 1.07053 1.28653 1.31798 1.39723 3.08193 3.32857 3.40156 3.44966 3.64848 3.81255 4.26723 4.34061 4.49364 4.69816 4.78341 4.80965 4.85207 4.89745 4.91291 4.94871 5.07190 5.18285 5.19435 5.31735 5.33754 5.38548 5.40577 5.56499 5.64484 5.70753 5.79155 5.91489 6.00869 6.09590 6.15467 6.16834 6.32099 6.33754 6.55845 6.63490 6.71760 6.75083 6.80960 7.16634 7.23422 7.32737 7.62529 7.71623 7.86563 8.03346 8.11796 8.46894 9.08316 9.64772 11.14112 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010665 B = 0.002777 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.794015 B =10080.786812 C =11799.149578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.125 3.875 4 C -0.158 4.158 5 C -0.073 4.073 6 C -0.121 4.121 7 C 0.181 3.819 8 H 0.064 0.936 9 N -0.673 5.673 10 C 0.059 3.941 11 C -0.105 4.105 12 C 0.023 3.977 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.155 3.845 22 C -0.169 4.169 23 C -0.075 4.075 24 C -0.181 4.181 25 C 0.097 3.903 26 N -0.453 5.453 27 C -0.033 4.033 28 C -0.213 4.213 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.345 0.655 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.152 0.848 46 H 0.141 0.859 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 -20.855 15.206 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.080 3.920 4 C -0.177 4.177 5 C -0.092 4.092 6 C -0.122 4.122 7 C 0.070 3.930 8 H 0.082 0.918 9 N -0.305 5.305 10 C -0.069 4.069 11 C -0.143 4.143 12 C -0.015 4.015 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.016 3.984 22 C -0.190 4.190 23 C -0.102 4.102 24 C -0.201 4.201 25 C -0.060 4.060 26 N -0.162 5.162 27 C -0.051 4.051 28 C -0.232 4.232 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.169 0.831 46 H 0.159 0.841 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.323 -20.797 15.252 26.333 hybrid contribution 0.722 0.763 -0.717 1.272 sum -4.601 -20.033 14.535 25.174 Atomic orbital electron populations 1.23038 0.78470 1.03716 1.01510 1.86043 1.21354 1.27244 1.88851 1.19072 0.92374 0.84084 0.96518 1.20285 0.91337 0.98322 1.07763 1.20831 0.99659 0.91074 0.97616 1.19620 0.94109 0.93449 1.05025 1.19164 0.96175 0.88312 0.89324 0.91782 1.60492 1.33480 1.13763 1.22718 1.22198 0.94047 0.92554 0.98099 1.21601 0.99262 0.96842 0.96603 1.19060 0.94408 0.92213 0.95816 1.21297 0.96457 1.10271 1.27472 0.92620 1.25030 0.94904 0.97791 0.96842 1.69973 1.09796 1.29506 1.44389 0.86549 0.80255 0.80741 0.80545 1.19708 1.21041 1.21060 1.20987 0.88257 0.93997 0.95148 1.21978 0.99398 1.01183 0.96418 1.21509 0.98425 0.95912 0.94305 1.22104 0.93899 1.02588 1.01528 1.22759 0.98134 0.94262 0.90845 1.67416 1.29162 1.12107 1.07473 1.20929 0.93945 0.97319 0.92925 1.21276 0.99994 0.92327 1.09580 0.88435 0.92656 0.92551 0.85458 0.85579 0.83530 0.91713 0.95520 0.93560 0.92583 0.96689 0.96806 0.93127 0.85087 0.85066 0.85192 0.83115 0.84133 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.44 10.50 -19.44 -0.20 -3.64 16 3 C 0.12 1.43 6.69 -39.22 -0.26 1.17 16 4 C -0.16 -1.76 9.99 -39.43 -0.39 -2.15 16 5 C -0.07 -0.81 9.66 -39.61 -0.38 -1.19 16 6 C -0.12 -1.49 4.63 -104.60 -0.48 -1.97 16 7 C 0.18 2.37 2.54 -70.01 -0.18 2.20 16 8 H 0.06 0.79 7.39 -51.93 -0.38 0.40 16 9 N -0.67 -10.07 5.68 -109.19 -0.62 -10.69 16 10 C 0.06 1.04 5.48 -3.83 -0.02 1.02 16 11 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 17 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.16 2.12 5.51 -82.58 -0.45 1.66 16 22 C -0.17 -2.04 9.71 -39.44 -0.38 -2.43 16 23 C -0.08 -0.80 10.18 -39.28 -0.40 -1.20 16 24 C -0.18 -1.86 10.11 -39.44 -0.40 -2.26 16 25 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 26 N -0.45 -6.37 9.55 -9.47 -0.09 -6.46 16 27 C -0.03 -0.40 8.45 -39.61 -0.33 -0.74 16 28 C -0.21 -2.38 9.04 -39.44 -0.36 -2.74 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 31 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 32 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.13 1.15 8.03 -52.48 -0.42 0.72 16 34 H 0.35 4.92 7.99 -39.29 -0.31 4.60 16 35 H 0.06 1.19 8.00 -51.93 -0.42 0.78 16 36 H 0.03 0.45 8.06 -51.93 -0.42 0.04 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.13 1.35 7.95 -52.49 -0.42 0.93 16 43 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.14 1.84 7.72 -52.48 -0.41 1.44 16 47 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 LS Contribution 393.56 15.07 5.93 5.93 Total: -1.00 -33.25 393.56 -10.47 -43.71 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.25 Total: 2.90 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -3.95 Total: -22.14 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.03 Total: -43.73 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.20 Total: -3.64 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.25 -10.47 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593705304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.518 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds