Wall clock time and date at job start Tue Mar 31 2020 14:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99569 * 2 1 4 4 C 1.38735 * 120.05354 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94458 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05509 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94601 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47131 * 19.99616 * 7 6 5 9 9 N 1.46898 * 109.47684 * 140.00012 * 7 6 5 10 10 C 1.46893 * 111.00152 * 205.00165 * 9 7 6 11 11 C 1.53005 * 109.47281 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47158 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46883 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99993 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99807 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00261 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99810 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47559 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47411 * 119.99731 * 17 15 13 20 20 H 1.48502 * 109.46904 * 239.99398 * 17 15 13 21 21 C 1.50707 * 109.46939 * 260.00415 * 7 6 5 22 22 C 1.38227 * 119.62059 * 125.01917 * 21 7 6 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 7 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 304.99347 * 21 7 6 27 27 C 1.38271 * 120.11202 * 0.27502 * 6 5 4 28 28 C 1.38140 * 120.05275 * 359.45170 * 27 6 5 29 29 H 1.09005 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47266 * 299.99253 * 1 2 3 31 31 H 1.09003 * 109.47885 * 59.99384 * 1 2 3 32 32 H 1.08005 * 120.02335 * 359.96251 * 4 3 2 33 33 H 1.08004 * 119.97319 * 180.02562 * 5 4 3 34 34 H 1.00905 * 110.99376 * 328.95556 * 9 7 6 35 35 H 1.09001 * 109.47241 * 299.99673 * 10 9 7 36 36 H 1.09005 * 109.47287 * 59.99629 * 10 9 7 37 37 H 1.09001 * 109.46999 * 300.00168 * 11 10 9 38 38 H 1.08995 * 109.46458 * 59.99864 * 11 10 9 39 39 H 1.08999 * 109.47113 * 300.00478 * 12 11 10 40 40 H 1.08998 * 109.46913 * 60.00407 * 12 11 10 41 41 H 0.96992 * 120.00188 * 179.97438 * 16 15 13 42 42 H 1.07997 * 120.41915 * 359.97438 * 22 21 7 43 43 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 44 44 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 45 45 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 46 46 H 1.08005 * 119.96991 * 179.70820 * 27 6 5 47 47 H 1.08007 * 120.02778 * 180.27708 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9858 5.0186 -0.0028 8 1 5.0111 4.9038 -0.3545 9 7 3.2625 5.9360 -0.8934 10 6 4.1500 6.9955 -1.3911 11 6 3.3629 7.9286 -2.3135 12 6 4.2871 9.0325 -2.8314 13 6 3.5117 9.9518 -3.7395 14 1 2.4646 9.7670 -3.9286 15 6 4.1393 11.0283 -4.3296 16 7 5.4145 11.2532 -4.0996 17 14 3.1783 12.1675 -5.4557 18 1 1.7720 11.6997 -5.5501 19 1 3.2058 13.5465 -4.9055 20 1 3.7932 12.1616 -6.8074 21 6 3.9946 5.5791 1.3962 22 6 5.1927 5.9544 1.9743 23 6 5.1890 6.4739 3.2596 24 6 3.9761 6.5876 3.9220 25 6 2.8183 6.1920 3.2797 26 7 2.8590 5.7063 2.0542 27 6 1.9209 3.6048 0.0041 28 6 1.2914 2.3751 -0.0010 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 4.0208 0.3800 -0.0003 33 1 5.1344 2.5752 -0.0019 34 1 2.8335 5.4352 -1.6571 35 1 4.5444 7.5644 -0.5491 36 1 4.9749 6.5479 -1.9455 37 1 2.9687 7.3595 -3.1555 38 1 2.5379 8.3761 -1.7594 39 1 4.6809 9.6014 -1.9892 40 1 5.1123 8.5852 -3.3854 41 1 5.8561 12.0102 -4.5151 42 1 6.1195 5.8479 1.4302 43 1 6.1095 6.7790 3.7352 44 1 3.9362 6.9847 4.9256 45 1 1.8693 6.2812 3.7872 46 1 1.3340 4.5114 0.0085 47 1 0.2128 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593705304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:19 Heat of formation + Delta-G solvation = -4.619871 kcal Electronic energy + Delta-G solvation = -26530.382594 eV Core-core repulsion = 22870.066542 eV Total energy + Delta-G solvation = -3660.316053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47390 -40.76987 -38.92689 -37.41500 -35.62716 -33.91581 -33.19030 -32.06129 -31.78380 -31.04751 -28.65196 -27.75413 -26.21329 -24.61458 -24.09419 -23.66450 -22.93865 -21.96425 -21.39915 -19.08603 -18.50369 -17.84478 -17.40246 -17.18092 -16.81516 -16.63981 -16.56734 -16.30987 -16.06467 -15.49262 -15.32559 -14.80031 -14.61156 -14.53558 -14.38596 -14.30110 -13.95815 -13.83474 -13.69648 -13.38556 -13.21093 -12.84294 -12.78255 -12.61843 -12.50329 -12.26536 -12.20305 -11.88242 -11.71803 -11.54505 -11.39480 -11.11426 -10.70138 -10.56217 -10.25583 -9.90588 -9.89433 -9.39915 -9.05893 -8.20663 -6.31401 0.18916 0.42669 0.45401 0.52295 1.39421 1.39634 1.53403 2.39080 2.40567 2.76035 2.89247 3.12422 3.20176 3.45665 3.87774 3.92509 3.97108 3.99092 4.10244 4.21775 4.25460 4.32841 4.33928 4.36243 4.39537 4.47547 4.50594 4.58526 4.70987 4.73749 4.75096 4.78861 4.88819 4.95639 5.07457 5.15613 5.23183 5.26365 5.29055 5.33374 5.43837 5.51358 5.66579 5.74777 5.80005 5.85504 5.87776 6.05696 6.26891 6.43822 6.45807 6.85342 7.22140 7.37728 8.91505 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010665 B = 0.002777 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.794015 B =10080.786812 C =11799.149578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.117 3.883 4 C -0.165 4.165 5 C -0.074 4.074 6 C -0.130 4.130 7 C 0.184 3.816 8 H 0.072 0.928 9 N -0.673 5.673 10 C 0.077 3.923 11 C -0.090 4.090 12 C 0.028 3.972 13 C -0.542 4.542 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.276 1.276 21 C 0.131 3.869 22 C -0.183 4.183 23 C -0.081 4.081 24 C -0.177 4.177 25 C 0.079 3.921 26 N -0.480 5.480 27 C -0.042 4.042 28 C -0.216 4.216 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.349 0.651 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.052 0.948 38 H 0.046 0.954 39 H -0.011 1.011 40 H -0.006 1.006 41 H 0.264 0.736 42 H 0.143 0.857 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.128 0.872 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.150 -21.486 15.729 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.072 3.928 4 C -0.184 4.184 5 C -0.093 4.093 6 C -0.131 4.131 7 C 0.074 3.926 8 H 0.090 0.910 9 N -0.306 5.306 10 C -0.052 4.052 11 C -0.128 4.128 12 C -0.010 4.010 13 C -0.580 4.580 14 H 0.076 0.924 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.007 4.007 22 C -0.203 4.203 23 C -0.106 4.106 24 C -0.196 4.196 25 C -0.078 4.078 26 N -0.189 5.189 27 C -0.061 4.061 28 C -0.234 4.234 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.007 0.993 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.160 0.840 43 H 0.176 0.824 44 H 0.178 0.822 45 H 0.187 0.813 46 H 0.146 0.854 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.976 -21.449 15.782 27.292 hybrid contribution 0.903 0.913 -0.797 1.511 sum -5.073 -20.536 14.985 25.924 Atomic orbital electron populations 1.23314 0.76647 1.05484 1.02088 1.86029 1.23307 1.26828 1.88693 1.19241 0.92765 0.84482 0.96296 1.20542 0.91595 0.98874 1.07385 1.21026 1.00600 0.90641 0.97016 1.19603 0.94194 0.93387 1.05870 1.19170 0.96293 0.88274 0.88882 0.91044 1.60378 1.33247 1.14096 1.22854 1.21841 0.93829 0.92665 0.96874 1.21338 0.98122 0.96004 0.97292 1.18944 0.94509 0.93152 0.94381 1.21716 0.96856 1.11213 1.28200 0.92403 1.25981 0.95939 0.99518 0.98431 1.70097 1.11491 1.30311 1.45463 0.85401 0.79026 0.78320 0.78326 1.18690 1.20329 1.20184 1.21097 0.88904 0.95267 0.95450 1.22224 0.99399 1.01320 0.97377 1.21910 0.99785 0.95105 0.93835 1.22461 0.93199 1.01311 1.02652 1.23218 0.99758 0.94294 0.90548 1.67371 1.29739 1.13129 1.08665 1.20865 0.94054 0.97304 0.93845 1.21417 1.00898 0.91877 1.09219 0.86178 0.92035 0.91981 0.84044 0.83783 0.83123 0.92800 0.95073 0.92926 0.93489 0.99300 0.98809 0.92752 0.83961 0.82384 0.82168 0.81254 0.85417 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -6.75 10.50 -92.46 -0.97 -7.72 16 3 C 0.12 2.60 6.69 22.51 0.15 2.75 16 4 C -0.17 -3.51 9.99 22.37 0.22 -3.29 16 5 C -0.07 -1.59 9.66 22.25 0.21 -1.37 16 6 C -0.13 -3.16 4.63 -19.85 -0.09 -3.26 16 7 C 0.18 4.82 2.54 43.43 0.11 4.93 16 8 H 0.07 1.73 7.39 -2.39 -0.02 1.71 16 9 N -0.67 -20.34 5.68 -499.35 -2.84 -23.18 16 10 C 0.08 2.72 5.48 86.31 0.47 3.20 16 11 C -0.09 -3.84 5.41 30.60 0.17 -3.68 16 12 C 0.03 1.50 4.97 29.85 0.15 1.65 16 13 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 16 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 17 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 C 0.13 3.57 5.51 42.55 0.23 3.80 16 22 C -0.18 -4.29 9.71 22.36 0.22 -4.07 16 23 C -0.08 -1.58 10.18 22.47 0.23 -1.35 16 24 C -0.18 -3.31 10.11 22.36 0.23 -3.09 16 25 C 0.08 1.80 11.18 84.67 0.95 2.74 16 26 N -0.48 -13.49 9.55 -183.88 -1.76 -15.24 16 27 C -0.04 -1.04 8.45 22.25 0.19 -0.86 16 28 C -0.22 -4.71 9.04 22.36 0.20 -4.51 16 29 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 0.68 7.66 -2.38 -0.02 0.66 16 31 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.14 2.44 8.03 -2.91 -0.02 2.41 16 34 H 0.35 9.99 7.99 -89.69 -0.72 9.28 16 35 H 0.05 2.03 8.00 -2.39 -0.02 2.01 16 36 H 0.03 1.07 8.06 -2.38 -0.02 1.05 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.14 2.84 7.95 -2.91 -0.02 2.82 16 43 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 46 H 0.13 3.44 7.72 -2.91 -0.02 3.42 16 47 H 0.14 2.50 6.30 -2.91 -0.02 2.48 16 Total: -1.00 -72.04 393.56 2.43 -69.61 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.24 Total: 22.87 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 5.45 Total: -36.13 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -4.31 Total: -95.73 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.97 Total: -7.72 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -72.04 2.43 -69.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593705304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.990 kcal (2) G-P(sol) polarization free energy of solvation -72.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds