Wall clock time and date at job start Tue Mar 31 2020 14:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 102.99900 * 2 1 4 4 C 1.53000 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.53005 * 115.55032 * 297.54640 * 4 3 2 6 6 C 1.50702 * 109.46822 * 294.43028 * 5 4 3 7 7 O 1.21279 * 119.99910 * 355.17339 * 6 5 4 8 8 N 1.34776 * 119.99751 * 175.17636 * 6 5 4 9 9 C 1.46500 * 119.99857 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47070 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.49219 * 55.06637 * 10 9 8 12 12 C 1.53040 * 109.49590 * 175.16280 * 10 9 8 13 13 C 1.53043 * 109.53376 * 181.31883 * 12 10 9 14 14 C 1.53626 * 109.24112 * 298.50861 * 13 12 10 15 15 N 1.46929 * 108.54021 * 54.86129 * 14 13 12 16 16 C 1.36936 * 120.63116 * 126.36825 * 15 14 13 17 17 H 1.08000 * 120.00076 * 209.47055 * 16 15 14 18 18 C 1.38813 * 119.99861 * 29.46430 * 16 15 14 19 19 N 1.31622 * 119.99798 * 195.92021 * 18 16 15 20 20 Si 1.86802 * 120.00189 * 15.92124 * 18 16 15 21 21 H 1.48499 * 109.47043 * 269.99748 * 20 18 16 22 22 H 1.48502 * 109.46827 * 29.99905 * 20 18 16 23 23 H 1.48498 * 109.47296 * 149.99923 * 20 18 16 24 24 C 1.46929 * 118.73789 * 306.08936 * 15 14 13 25 25 C 1.52998 * 117.50097 * 83.21732 * 4 3 2 26 26 C 1.52997 * 117.49862 * 151.87303 * 4 3 2 27 27 H 1.09003 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47147 * 300.00309 * 1 2 3 29 29 H 1.08991 * 109.46934 * 60.00258 * 1 2 3 30 30 H 1.08995 * 109.47590 * 59.99833 * 3 2 1 31 31 H 1.08997 * 109.46635 * 299.99799 * 3 2 1 32 32 H 1.08996 * 109.46788 * 174.42720 * 5 4 3 33 33 H 1.08998 * 109.47084 * 54.42784 * 5 4 3 34 34 H 0.97005 * 120.00245 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47071 * 60.00557 * 9 8 6 36 36 H 1.08995 * 109.47369 * 300.00136 * 9 8 6 37 37 H 1.08993 * 109.46127 * 301.33649 * 12 10 9 38 38 H 1.08995 * 109.45996 * 61.31568 * 12 10 9 39 39 H 1.08997 * 109.49995 * 58.59084 * 13 12 10 40 40 H 1.09002 * 109.49227 * 178.68436 * 13 12 10 41 41 H 1.08993 * 109.74280 * 295.12201 * 14 13 12 42 42 H 1.09004 * 109.66296 * 174.55380 * 14 13 12 43 43 H 0.96994 * 120.00598 * 354.92237 * 19 18 16 44 44 H 1.09001 * 109.58385 * 173.64822 * 24 15 14 45 45 H 1.08998 * 109.58440 * 294.07264 * 24 15 14 46 46 H 1.08996 * 117.50196 * 215.00650 * 25 4 3 47 47 H 1.09010 * 117.49889 * 0.02562 * 25 4 3 48 48 H 1.09001 * 117.49751 * 359.97438 * 26 4 3 49 49 H 1.09007 * 117.49811 * 144.99667 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.4705 1.3799 1.2229 6 6 4.0670 2.1594 2.4479 7 8 3.3440 3.1271 2.3400 8 7 4.5098 1.7812 3.6634 9 6 4.1180 2.5393 4.8542 10 6 4.7510 1.9044 6.0941 11 1 5.8305 1.8382 5.9579 12 6 4.4420 2.7637 7.3222 13 6 5.1023 2.1471 8.5575 14 6 4.5249 0.7430 8.7925 15 7 4.6934 -0.0433 7.5628 16 6 5.3169 -1.2621 7.5939 17 1 5.8566 -1.6148 6.7275 18 6 5.2554 -2.0441 8.7392 19 7 6.0911 -3.0489 8.8956 20 14 3.9866 -1.6705 10.0583 21 1 4.5603 -0.7162 11.0408 22 1 2.7820 -1.0705 9.4305 23 1 3.6089 -2.9280 10.7521 24 6 4.1746 0.5001 6.3001 25 6 4.4617 1.8605 -1.3486 26 6 4.3091 3.2089 -0.6405 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 1.8031 2.2372 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 5.5470 1.4658 1.0758 33 1 4.2044 0.3313 1.3556 34 1 5.0884 1.0074 3.7497 35 1 3.0327 2.5250 4.9532 36 1 4.4606 3.5695 4.7581 37 1 4.8296 3.7706 7.1677 38 1 3.3633 2.8088 7.4717 39 1 6.1785 2.0787 8.3988 40 1 4.9014 2.7721 9.4275 41 1 3.4652 0.8168 9.0367 42 1 5.0578 0.2596 9.6113 43 1 6.7003 -3.2890 8.1801 44 1 4.4764 -0.1436 5.4739 45 1 3.0869 0.5545 6.3453 46 1 5.4537 1.4091 -1.3638 47 1 3.8519 1.6858 -2.2351 48 1 3.5989 3.9207 -1.0615 49 1 5.2007 3.6448 -0.1898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593893379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:54 Heat of formation + Delta-G solvation = -7.724156 kcal Electronic energy + Delta-G solvation = -26080.097182 eV Core-core repulsion = 22555.090469 eV Total energy + Delta-G solvation = -3525.006713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.05379 -38.39171 -37.54982 -34.88609 -33.09269 -31.16690 -30.73343 -29.78482 -29.35676 -28.23448 -25.57124 -24.95975 -22.68013 -21.95498 -21.45751 -20.67219 -19.58937 -19.15228 -17.36589 -16.98769 -16.44771 -15.84328 -15.74573 -15.32138 -15.19234 -14.75960 -14.30918 -14.15650 -13.88639 -13.82509 -13.61904 -13.55745 -13.35960 -13.03559 -12.81381 -12.53308 -12.51375 -12.10586 -11.97455 -11.84616 -11.75235 -11.60639 -11.33573 -10.78184 -10.62307 -10.61489 -10.52720 -10.41114 -10.06763 -9.91532 -9.75808 -9.52769 -9.49705 -9.08914 -8.94043 -8.55573 -7.82560 -7.05429 -6.24367 -3.36011 1.46070 2.40399 2.71376 3.16977 3.37968 3.52593 3.68117 3.70300 4.29521 4.47036 4.56400 4.56658 4.67608 4.83414 4.89767 4.93583 4.99941 5.15632 5.19675 5.23354 5.28459 5.33902 5.41475 5.45693 5.47101 5.52692 5.60272 5.63009 5.69560 5.78177 5.82194 5.84105 5.88737 6.01723 6.08864 6.12654 6.29410 6.37183 6.48475 6.55783 6.58348 6.67358 6.70611 6.95265 7.58532 7.99126 8.29230 8.43440 9.05362 9.58512 10.19178 11.14525 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.002861 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.443654 B = 9784.166636 C =10582.698464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.262 6.262 3 C -0.046 4.046 4 C -0.090 4.090 5 C -0.108 4.108 6 C 0.516 3.484 7 O -0.543 6.543 8 N -0.726 5.726 9 C 0.129 3.871 10 C -0.119 4.119 11 H 0.075 0.925 12 C -0.100 4.100 13 C -0.134 4.134 14 C 0.119 3.881 15 N -0.606 5.606 16 C -0.342 4.342 17 H 0.065 0.935 18 C -0.018 4.018 19 N -0.925 5.925 20 Si 1.072 2.928 21 H -0.294 1.294 22 H -0.285 1.285 23 H -0.301 1.301 24 C 0.156 3.844 25 C -0.167 4.167 26 C -0.151 4.151 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.403 0.597 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.262 0.738 44 H 0.056 0.944 45 H 0.022 0.978 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 12.124 -18.114 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.035 6.035 3 C -0.193 4.193 4 C -0.092 4.092 5 C -0.148 4.148 6 C 0.302 3.698 7 O -0.421 6.421 8 N -0.377 5.377 9 C 0.005 3.995 10 C -0.140 4.140 11 H 0.093 0.907 12 C -0.138 4.138 13 C -0.173 4.173 14 C -0.006 4.006 15 N -0.330 5.330 16 C -0.471 4.471 17 H 0.083 0.917 18 C -0.219 4.219 19 N -0.565 5.565 20 Si 0.904 3.096 21 H -0.223 1.223 22 H -0.211 1.211 23 H -0.230 1.230 24 C 0.029 3.971 25 C -0.204 4.204 26 C -0.190 4.190 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.238 0.762 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.040 0.960 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.113 0.887 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.461 11.439 -16.680 21.233 hybrid contribution -0.012 1.110 -1.427 1.808 sum -6.473 12.549 -18.107 22.962 Atomic orbital electron populations 1.23372 0.94541 1.06460 1.04771 1.86860 1.06973 1.11670 1.98025 1.22963 0.96787 0.93956 1.05632 1.20519 0.91895 1.03307 0.93486 1.21249 1.01127 1.01222 0.91221 1.20500 0.80112 0.84717 0.84436 1.90646 1.36960 1.27980 1.86513 1.46104 1.52114 1.33006 1.06516 1.21397 0.99783 0.94810 0.83510 1.21951 1.00923 0.98172 0.92944 0.90700 1.21337 1.00476 0.97415 0.94607 1.22068 1.00697 0.97959 0.96592 1.21534 0.97589 0.90843 0.90674 1.44325 1.67566 1.18928 1.02147 1.20245 1.29075 0.94001 1.03760 0.91739 1.26239 1.00710 0.94648 1.00277 1.70896 1.21038 1.30991 1.33582 0.83696 0.76375 0.74232 0.75259 1.22290 1.21089 1.22960 1.20926 0.95263 0.91137 0.89755 1.23153 1.01833 1.00619 0.94827 1.23002 1.02763 0.90622 1.02634 0.88095 0.90496 0.90746 0.88354 0.90358 0.88575 0.87712 0.76206 0.91726 0.92044 0.92898 0.92321 0.91929 0.92668 0.95429 0.90910 0.92777 0.92556 0.96044 0.88379 0.88357 0.88661 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.76 101.05 1.09 0.06 16 2 S -0.26 -2.83 21.49 -107.50 -2.31 -5.14 16 3 C -0.05 -0.47 5.58 37.16 0.21 -0.27 16 4 C -0.09 -0.89 1.03 -154.51 -0.16 -1.05 16 5 C -0.11 -1.11 5.43 -27.88 -0.15 -1.26 16 6 C 0.52 6.69 7.64 -10.98 -0.08 6.60 16 7 O -0.54 -8.51 14.54 5.56 0.08 -8.43 16 8 N -0.73 -9.27 5.33 -60.30 -0.32 -9.59 16 9 C 0.13 1.78 5.07 -4.04 -0.02 1.76 16 10 C -0.12 -1.85 2.38 -90.50 -0.21 -2.07 16 11 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 12 C -0.10 -1.51 5.17 -26.69 -0.14 -1.64 16 13 C -0.13 -2.30 6.10 -26.38 -0.16 -2.46 16 14 C 0.12 2.55 4.19 -3.48 -0.01 2.53 16 15 N -0.61 -14.21 2.76 -172.05 -0.47 -14.69 16 16 C -0.34 -9.46 9.92 -15.06 -0.15 -9.61 16 17 H 0.06 1.89 8.06 -52.49 -0.42 1.47 16 18 C -0.02 -0.51 5.31 -17.43 -0.09 -0.61 16 19 N -0.93 -28.59 13.70 55.49 0.76 -27.83 16 20 Si 1.07 26.49 24.63 -169.99 -4.19 22.31 16 21 H -0.29 -6.83 6.54 56.52 0.37 -6.46 16 22 H -0.28 -6.72 6.50 56.52 0.37 -6.35 16 23 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 24 C 0.16 2.99 5.60 -3.71 -0.02 2.97 16 25 C -0.17 -1.34 9.94 -26.70 -0.27 -1.60 16 26 C -0.15 -1.34 9.85 -26.70 -0.26 -1.60 16 27 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 1.22 6.64 -51.93 -0.34 0.88 16 31 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 32 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.10 1.09 7.39 -51.93 -0.38 0.71 16 34 H 0.40 4.76 7.70 -40.82 -0.31 4.44 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.58 6.93 -51.93 -0.36 0.22 16 42 H 0.07 1.70 4.38 -51.93 -0.23 1.47 16 43 H 0.26 8.01 8.73 -40.82 -0.36 7.66 16 44 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 48 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -32.08 391.84 -9.81 -41.89 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.82 Total: 3.82 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.44 Total: -8.25 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.04 Total: -52.10 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.19 Total: 22.31 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -2.31 Total: -5.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.08 -9.81 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593893379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.162 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds