Wall clock time and date at job start Tue Mar 31 2020 14:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 102.99900 * 2 1 4 4 C 1.53000 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.53005 * 115.55032 * 297.54640 * 4 3 2 6 6 C 1.50702 * 109.46822 * 294.43028 * 5 4 3 7 7 O 1.21279 * 119.99910 * 355.17339 * 6 5 4 8 8 N 1.34776 * 119.99751 * 175.17636 * 6 5 4 9 9 C 1.46500 * 119.99857 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47070 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.49219 * 55.06637 * 10 9 8 12 12 C 1.53040 * 109.49590 * 175.16280 * 10 9 8 13 13 C 1.53043 * 109.53376 * 181.31883 * 12 10 9 14 14 C 1.53626 * 109.24112 * 298.50861 * 13 12 10 15 15 N 1.46929 * 108.54021 * 54.86129 * 14 13 12 16 16 C 1.36936 * 120.63116 * 126.36825 * 15 14 13 17 17 H 1.08000 * 120.00076 * 209.47055 * 16 15 14 18 18 C 1.38813 * 119.99861 * 29.46430 * 16 15 14 19 19 N 1.31622 * 119.99798 * 195.92021 * 18 16 15 20 20 Si 1.86802 * 120.00189 * 15.92124 * 18 16 15 21 21 H 1.48499 * 109.47043 * 269.99748 * 20 18 16 22 22 H 1.48502 * 109.46827 * 29.99905 * 20 18 16 23 23 H 1.48498 * 109.47296 * 149.99923 * 20 18 16 24 24 C 1.46929 * 118.73789 * 306.08936 * 15 14 13 25 25 C 1.52998 * 117.50097 * 83.21732 * 4 3 2 26 26 C 1.52997 * 117.49862 * 151.87303 * 4 3 2 27 27 H 1.09003 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47147 * 300.00309 * 1 2 3 29 29 H 1.08991 * 109.46934 * 60.00258 * 1 2 3 30 30 H 1.08995 * 109.47590 * 59.99833 * 3 2 1 31 31 H 1.08997 * 109.46635 * 299.99799 * 3 2 1 32 32 H 1.08996 * 109.46788 * 174.42720 * 5 4 3 33 33 H 1.08998 * 109.47084 * 54.42784 * 5 4 3 34 34 H 0.97005 * 120.00245 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47071 * 60.00557 * 9 8 6 36 36 H 1.08995 * 109.47369 * 300.00136 * 9 8 6 37 37 H 1.08993 * 109.46127 * 301.33649 * 12 10 9 38 38 H 1.08995 * 109.45996 * 61.31568 * 12 10 9 39 39 H 1.08997 * 109.49995 * 58.59084 * 13 12 10 40 40 H 1.09002 * 109.49227 * 178.68436 * 13 12 10 41 41 H 1.08993 * 109.74280 * 295.12201 * 14 13 12 42 42 H 1.09004 * 109.66296 * 174.55380 * 14 13 12 43 43 H 0.96994 * 120.00598 * 354.92237 * 19 18 16 44 44 H 1.09001 * 109.58385 * 173.64822 * 24 15 14 45 45 H 1.08998 * 109.58440 * 294.07264 * 24 15 14 46 46 H 1.08996 * 117.50196 * 215.00650 * 25 4 3 47 47 H 1.09010 * 117.49889 * 0.02562 * 25 4 3 48 48 H 1.09001 * 117.49751 * 359.97438 * 26 4 3 49 49 H 1.09007 * 117.49811 * 144.99667 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.4705 1.3799 1.2229 6 6 4.0670 2.1594 2.4479 7 8 3.3440 3.1271 2.3400 8 7 4.5098 1.7812 3.6634 9 6 4.1180 2.5393 4.8542 10 6 4.7510 1.9044 6.0941 11 1 5.8305 1.8382 5.9579 12 6 4.4420 2.7637 7.3222 13 6 5.1023 2.1471 8.5575 14 6 4.5249 0.7430 8.7925 15 7 4.6934 -0.0433 7.5628 16 6 5.3169 -1.2621 7.5939 17 1 5.8566 -1.6148 6.7275 18 6 5.2554 -2.0441 8.7392 19 7 6.0911 -3.0489 8.8956 20 14 3.9866 -1.6705 10.0583 21 1 4.5603 -0.7162 11.0408 22 1 2.7820 -1.0705 9.4305 23 1 3.6089 -2.9280 10.7521 24 6 4.1746 0.5001 6.3001 25 6 4.4617 1.8605 -1.3486 26 6 4.3091 3.2089 -0.6405 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 1.8031 2.2372 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 5.5470 1.4658 1.0758 33 1 4.2044 0.3313 1.3556 34 1 5.0884 1.0074 3.7497 35 1 3.0327 2.5250 4.9532 36 1 4.4606 3.5695 4.7581 37 1 4.8296 3.7706 7.1677 38 1 3.3633 2.8088 7.4717 39 1 6.1785 2.0787 8.3988 40 1 4.9014 2.7721 9.4275 41 1 3.4652 0.8168 9.0367 42 1 5.0578 0.2596 9.6113 43 1 6.7003 -3.2890 8.1801 44 1 4.4764 -0.1436 5.4739 45 1 3.0869 0.5545 6.3453 46 1 5.4537 1.4091 -1.3638 47 1 3.8519 1.6858 -2.2351 48 1 3.5989 3.9207 -1.0615 49 1 5.2007 3.6448 -0.1898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593893379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:54 Heat of formation + Delta-G solvation = -27.066518 kcal Electronic energy + Delta-G solvation = -26080.935930 eV Core-core repulsion = 22555.090469 eV Total energy + Delta-G solvation = -3525.845461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05764 -39.70389 -38.53230 -36.26782 -34.77415 -32.82779 -32.26456 -30.67360 -30.11344 -29.04354 -27.05879 -26.58616 -23.50888 -23.33560 -23.03175 -21.72727 -20.93862 -20.10794 -19.35657 -18.02088 -17.35575 -17.02189 -16.73511 -16.70048 -16.19940 -15.99505 -15.61266 -15.38945 -15.15974 -15.12353 -14.92137 -14.56700 -14.46448 -14.06188 -13.88911 -13.72318 -13.67263 -13.66024 -13.37207 -13.05407 -12.83535 -12.43957 -12.35752 -12.32456 -12.08096 -11.76274 -11.62058 -11.49436 -11.39035 -11.27430 -11.25370 -11.13282 -10.83647 -10.59156 -10.38680 -10.02535 -9.08742 -8.66618 -8.45594 -5.55495 0.70429 1.40342 1.55211 1.63464 1.71668 1.72688 2.21292 2.53000 2.96042 3.13083 3.33734 3.56822 3.70375 3.82273 3.85195 3.91323 3.94248 4.01588 4.14081 4.25042 4.27084 4.30147 4.38977 4.45008 4.51549 4.56270 4.62871 4.70699 4.75941 4.79613 4.81838 4.82854 4.83142 4.86798 4.97112 5.05296 5.07281 5.08443 5.17193 5.24522 5.25822 5.27011 5.48201 5.56436 5.77339 6.27308 6.56236 6.93076 7.27053 7.57041 8.08946 8.88381 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.002861 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.443654 B = 9784.166636 C =10582.698464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.301 6.301 3 C -0.033 4.033 4 C -0.110 4.110 5 C -0.103 4.103 6 C 0.515 3.485 7 O -0.570 6.570 8 N -0.726 5.726 9 C 0.139 3.861 10 C -0.103 4.103 11 H 0.068 0.932 12 C -0.098 4.098 13 C -0.127 4.127 14 C 0.108 3.892 15 N -0.622 5.622 16 C -0.325 4.325 17 H 0.034 0.966 18 C -0.074 4.074 19 N -0.963 5.963 20 Si 1.111 2.889 21 H -0.270 1.270 22 H -0.267 1.267 23 H -0.312 1.312 24 C 0.153 3.847 25 C -0.150 4.150 26 C -0.151 4.151 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.407 0.593 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.248 0.752 44 H 0.048 0.952 45 H 0.024 0.976 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 14.496 -18.801 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.075 6.075 3 C -0.181 4.181 4 C -0.111 4.111 5 C -0.143 4.143 6 C 0.303 3.697 7 O -0.450 6.450 8 N -0.378 5.378 9 C 0.015 3.985 10 C -0.124 4.124 11 H 0.086 0.914 12 C -0.136 4.136 13 C -0.166 4.166 14 C -0.016 4.016 15 N -0.347 5.347 16 C -0.455 4.455 17 H 0.052 0.948 18 C -0.268 4.268 19 N -0.606 5.606 20 Si 0.938 3.062 21 H -0.197 1.197 22 H -0.192 1.192 23 H -0.241 1.241 24 C 0.028 3.972 25 C -0.187 4.187 26 C -0.191 4.191 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.243 0.757 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.042 0.958 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.116 0.884 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.372 13.856 -17.391 23.426 hybrid contribution 0.261 0.386 -1.316 1.396 sum -7.111 14.242 -18.707 24.563 Atomic orbital electron populations 1.23418 0.92231 1.07273 1.05434 1.86949 1.09700 1.12736 1.98085 1.22852 0.97328 0.93022 1.04910 1.20588 0.91640 1.04601 0.94307 1.21249 1.02379 1.00448 0.90188 1.20946 0.79371 0.84414 0.84954 1.90632 1.38144 1.29310 1.86900 1.46134 1.52123 1.33066 1.06460 1.21227 0.99162 0.95120 0.82970 1.21732 1.00240 0.95956 0.94450 0.91375 1.21363 1.01001 0.98416 0.92833 1.21981 0.99850 0.95742 0.99011 1.21664 0.98145 0.92774 0.89018 1.44453 1.67794 1.18092 1.04372 1.20164 1.27496 0.95525 1.02322 0.94802 1.27417 1.01873 0.94448 1.03088 1.71006 1.22797 1.33146 1.33629 0.83198 0.74920 0.74271 0.73858 1.19677 1.19238 1.24074 1.21051 0.95348 0.93104 0.87702 1.23206 1.02089 0.99566 0.93837 1.23044 1.02702 0.90766 1.02550 0.87211 0.90722 0.89186 0.90721 0.89258 0.86562 0.88036 0.75723 0.92346 0.91059 0.89878 0.91438 0.93038 0.89661 0.94364 0.93084 0.94321 0.93334 0.95802 0.87253 0.87675 0.88389 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 10.76 113.37 1.22 -0.57 16 2 S -0.30 -6.31 21.49 -56.49 -1.21 -7.53 16 3 C -0.03 -0.67 5.58 71.98 0.40 -0.27 16 4 C -0.11 -2.02 1.03 -52.18 -0.05 -2.07 16 5 C -0.10 -1.99 5.43 29.85 0.16 -1.83 16 6 C 0.52 12.82 7.64 87.66 0.67 13.49 16 7 O -0.57 -17.34 14.54 -3.03 -0.04 -17.39 16 8 N -0.73 -17.67 5.33 -463.06 -2.47 -20.14 16 9 C 0.14 3.55 5.07 86.38 0.44 3.99 16 10 C -0.10 -2.99 2.38 -10.72 -0.03 -3.02 16 11 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 12 C -0.10 -2.59 5.17 30.62 0.16 -2.43 16 13 C -0.13 -3.97 6.10 30.82 0.19 -3.78 16 14 C 0.11 4.43 4.19 86.51 0.36 4.79 16 15 N -0.62 -28.80 2.76 -698.25 -1.92 -30.73 16 16 C -0.33 -18.35 9.92 84.03 0.83 -17.51 16 17 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 18 C -0.07 -4.37 5.31 84.86 0.45 -3.92 16 19 N -0.96 -61.46 13.70 21.65 0.30 -61.17 16 20 Si 1.11 53.46 24.63 68.60 1.69 55.15 16 21 H -0.27 -11.83 6.54 99.48 0.65 -11.18 16 22 H -0.27 -11.92 6.50 99.48 0.65 -11.28 16 23 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 24 C 0.15 5.74 5.60 86.36 0.48 6.22 16 25 C -0.15 -2.09 9.94 30.61 0.30 -1.78 16 26 C -0.15 -2.42 9.85 30.61 0.30 -2.12 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.85 6.64 -2.39 -0.02 1.83 16 31 H 0.09 1.53 8.11 -2.39 -0.02 1.51 16 32 H 0.12 1.74 8.09 -2.39 -0.02 1.73 16 33 H 0.10 2.05 7.39 -2.39 -0.02 2.03 16 34 H 0.41 9.29 7.70 -92.70 -0.71 8.58 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.04 1.49 6.93 -2.39 -0.02 1.47 16 42 H 0.05 2.30 4.38 -2.38 -0.01 2.29 16 43 H 0.25 15.89 8.73 -92.71 -0.81 15.08 16 44 H 0.05 1.85 7.13 -2.39 -0.02 1.83 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 47 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 49 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -70.77 391.84 2.28 -68.49 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.05 Total: 24.13 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 5.89 Total: -10.82 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -4.10 Total: -112.03 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.04 Total: -17.39 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 1.69 Total: 55.15 kcal Atomic # 16 Polarization: -6.31 SS G_CDS: -1.21 Total: -7.53 kcal Total: -70.77 2.28 -68.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593893379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.425 kcal (2) G-P(sol) polarization free energy of solvation -70.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds