Wall clock time and date at job start Tue Mar 31 2020 14:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81402 * 102.99891 * 2 1 4 4 C 1.53003 * 109.46835 * 180.02562 * 3 2 1 5 5 C 1.52998 * 115.54785 * 293.26870 * 4 3 2 6 6 C 1.50703 * 109.47277 * 279.04027 * 5 4 3 7 7 O 1.21281 * 119.99760 * 6.31628 * 6 5 4 8 8 N 1.34776 * 119.99922 * 186.32189 * 6 5 4 9 9 C 1.46497 * 119.99721 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47309 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.52144 * 305.08245 * 10 9 8 12 12 C 1.53034 * 109.49873 * 184.99891 * 10 9 8 13 13 C 1.53047 * 109.52807 * 178.68997 * 12 10 9 14 14 C 1.53172 * 109.32465 * 61.37113 * 13 12 10 15 15 N 1.46926 * 108.76883 * 305.35702 * 14 13 12 16 16 C 1.36934 * 120.63181 * 233.59024 * 15 14 13 17 17 H 1.07997 * 120.00231 * 146.96561 * 16 15 14 18 18 C 1.38810 * 119.99628 * 326.96383 * 16 15 14 19 19 N 1.31618 * 120.00309 * 348.68513 * 18 16 15 20 20 Si 1.86801 * 119.99765 * 168.68082 * 18 16 15 21 21 H 1.48510 * 109.46837 * 90.00295 * 20 18 16 22 22 H 1.48502 * 109.47232 * 210.00210 * 20 18 16 23 23 H 1.48501 * 109.47357 * 330.00311 * 20 18 16 24 24 C 1.46930 * 118.73632 * 53.60993 * 15 14 13 25 25 C 1.52998 * 117.52117 * 78.96941 * 4 3 2 26 26 C 1.52993 * 117.49865 * 147.59822 * 4 3 2 27 27 H 1.08998 * 109.47431 * 299.99917 * 1 2 3 28 28 H 1.09000 * 109.47456 * 59.99943 * 1 2 3 29 29 H 1.09000 * 109.47710 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47118 * 60.00258 * 3 2 1 31 31 H 1.08996 * 109.47218 * 299.99794 * 3 2 1 32 32 H 1.09006 * 109.47368 * 159.03700 * 5 4 3 33 33 H 1.09004 * 109.47398 * 39.03876 * 5 4 3 34 34 H 0.96992 * 120.00215 * 359.97438 * 8 6 5 35 35 H 1.08997 * 109.47362 * 59.99860 * 9 8 6 36 36 H 1.09005 * 109.47413 * 299.99570 * 9 8 6 37 37 H 1.09005 * 109.46302 * 298.70529 * 12 10 9 38 38 H 1.09002 * 109.46219 * 58.67685 * 12 10 9 39 39 H 1.08994 * 109.50094 * 181.31265 * 13 12 10 40 40 H 1.09002 * 109.49549 * 301.41285 * 13 12 10 41 41 H 1.08997 * 109.58630 * 185.57642 * 14 13 12 42 42 H 1.09000 * 109.70556 * 65.21475 * 14 13 12 43 43 H 0.97000 * 119.99813 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.58149 * 186.60251 * 24 15 14 45 45 H 1.09000 * 109.70742 * 66.24836 * 24 15 14 46 46 H 1.08996 * 117.50417 * 214.97476 * 25 4 3 47 47 H 1.09002 * 117.49723 * 359.97438 * 25 4 3 48 48 H 1.09006 * 117.49767 * 359.97438 * 26 4 3 49 49 H 1.09004 * 117.49765 * 144.99188 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.4599 1.4723 1.2671 6 6 4.3548 2.5390 2.3264 7 8 3.6691 3.5205 2.1327 8 7 5.0227 2.4024 3.4890 9 6 4.9209 3.4397 4.5185 10 6 5.7684 3.0421 5.7287 11 1 5.4670 2.0535 6.0755 12 6 5.5649 4.0614 6.8519 13 6 6.3870 3.6466 8.0744 14 6 7.8729 3.6268 7.7030 15 7 8.0557 2.7601 6.5308 16 6 8.9624 1.7343 6.5562 17 1 8.7653 0.8257 6.0068 18 6 10.1349 1.8624 7.2881 19 7 10.4837 3.0356 7.7722 20 14 11.2177 0.3697 7.5860 21 1 12.2096 0.2505 6.4872 22 1 11.9290 0.5245 8.8804 23 1 10.3753 -0.8526 7.6272 24 6 7.2474 3.0154 5.3306 25 6 4.4735 1.7618 -1.3328 26 6 4.3148 3.1581 -0.7280 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8032 2.2371 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 5.5101 1.2857 1.0424 33 1 3.9971 0.5541 1.6290 34 1 5.5709 1.6174 3.6440 35 1 3.8802 3.5476 4.8239 36 1 5.2819 4.3867 4.1172 37 1 5.8895 5.0452 6.5128 38 1 4.5091 4.1000 7.1204 39 1 6.2235 4.3601 8.8819 40 1 6.0798 2.6524 8.3990 41 1 8.4533 3.2375 8.5394 42 1 8.2059 4.6373 7.4660 43 1 11.3029 3.1249 8.2839 44 1 7.4154 2.2225 4.6017 45 1 7.5265 3.9756 4.8969 46 1 5.4657 1.3114 -1.3061 47 1 3.8714 1.5212 -2.2090 48 1 3.6084 3.8365 -1.2064 49 1 5.2027 3.6265 -0.3032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593893380.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:58 Heat of formation + Delta-G solvation = -11.330767 kcal Electronic energy + Delta-G solvation = -25823.433021 eV Core-core repulsion = 22298.269914 eV Total energy + Delta-G solvation = -3525.163108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.99412 -38.20545 -37.37079 -34.71353 -32.99568 -30.83269 -30.42591 -29.71626 -29.32110 -28.23491 -25.36450 -25.05122 -22.61543 -22.14400 -21.15143 -20.59365 -19.44074 -18.94744 -17.04132 -16.59903 -16.44406 -15.82359 -15.70280 -15.06934 -14.88902 -14.80093 -14.25609 -14.13459 -13.94675 -13.75509 -13.52998 -13.41797 -13.05076 -12.81081 -12.76857 -12.42342 -12.31585 -12.17734 -11.87643 -11.73437 -11.51195 -11.27451 -10.99450 -10.74012 -10.59217 -10.51765 -10.50540 -10.23547 -10.19572 -9.98896 -9.92365 -9.68587 -9.43415 -9.41810 -8.86149 -8.49796 -7.91278 -6.60988 -5.80864 -3.30257 1.38743 2.33315 2.77604 3.22614 3.34774 3.41788 3.43269 3.78148 4.31540 4.45566 4.50270 4.60377 4.73397 4.81483 4.84409 5.00942 5.13670 5.18822 5.30779 5.34367 5.37939 5.43425 5.47438 5.48947 5.52934 5.62071 5.66045 5.78279 5.83118 5.85387 5.97178 5.97971 6.01440 6.24563 6.33630 6.38014 6.56099 6.59393 6.70619 6.78364 6.85977 6.97245 7.38994 7.65510 7.67422 7.76638 8.35905 8.46187 9.20231 9.81521 10.41273 11.27236 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.002502 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.443875 B =11187.472938 C =11788.710108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.263 6.263 3 C -0.040 4.040 4 C -0.094 4.094 5 C -0.109 4.109 6 C 0.512 3.488 7 O -0.543 6.543 8 N -0.725 5.725 9 C 0.129 3.871 10 C -0.118 4.118 11 H 0.072 0.928 12 C -0.099 4.099 13 C -0.142 4.142 14 C 0.171 3.829 15 N -0.591 5.591 16 C -0.256 4.256 17 H 0.062 0.938 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.155 3.845 25 C -0.167 4.167 26 C -0.145 4.145 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.403 0.597 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.049 0.951 45 H 0.017 0.983 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.946 -2.793 -14.407 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.036 6.036 3 C -0.188 4.188 4 C -0.096 4.096 5 C -0.149 4.149 6 C 0.299 3.701 7 O -0.420 6.420 8 N -0.377 5.377 9 C 0.005 3.995 10 C -0.138 4.138 11 H 0.091 0.909 12 C -0.137 4.137 13 C -0.181 4.181 14 C 0.046 3.954 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.080 0.920 18 C -0.193 4.193 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.028 3.972 25 C -0.205 4.205 26 C -0.184 4.184 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.237 0.763 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.113 0.887 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.626 -2.931 -14.418 22.201 hybrid contribution 0.023 -0.041 0.375 0.378 sum -16.602 -2.972 -14.043 21.947 Atomic orbital electron populations 1.23376 0.94663 1.06375 1.04826 1.86868 1.06751 1.12009 1.98000 1.22909 0.96963 0.93557 1.05387 1.20528 0.91594 1.04728 0.92719 1.21276 1.02310 0.98615 0.92712 1.20548 0.79326 0.87577 0.82688 1.90664 1.40281 1.31587 1.79475 1.46112 1.49966 1.24944 1.16686 1.21421 0.99678 0.90777 0.87658 1.21954 0.98155 0.99853 0.93878 0.90943 1.21336 0.98603 0.98140 0.95660 1.22177 0.99940 1.00038 0.95968 1.20749 0.89934 0.93440 0.91302 1.43973 1.43459 1.35368 1.08537 1.19110 0.96541 0.93127 1.29822 0.92010 1.25205 0.96433 0.96274 1.01358 1.69990 1.24123 1.21550 1.38911 0.86302 0.80540 0.82491 0.77422 1.21318 1.21567 1.20408 1.20895 0.88129 0.98026 0.90128 1.23184 1.01668 1.00141 0.95482 1.22960 1.02806 0.90555 1.02059 0.90544 0.90682 0.88169 0.88999 0.90175 0.88552 0.87636 0.76259 0.92219 0.91748 0.92525 0.93525 0.93239 0.92787 0.89959 0.96385 0.93581 0.93204 0.96465 0.88338 0.88402 0.88697 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.76 101.05 1.09 0.23 16 2 S -0.26 -2.51 21.59 -107.50 -2.32 -4.83 16 3 C -0.04 -0.39 5.75 37.16 0.21 -0.18 16 4 C -0.09 -0.94 0.98 -154.51 -0.15 -1.09 16 5 C -0.11 -1.13 5.60 -27.88 -0.16 -1.28 16 6 C 0.51 6.75 7.68 -10.98 -0.08 6.67 16 7 O -0.54 -8.72 14.99 5.56 0.08 -8.63 16 8 N -0.73 -9.45 5.33 -60.29 -0.32 -9.77 16 9 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 10 C -0.12 -1.92 2.37 -90.50 -0.21 -2.13 16 11 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 12 C -0.10 -1.63 5.17 -26.69 -0.14 -1.77 16 13 C -0.14 -2.66 6.08 -26.62 -0.16 -2.82 16 14 C 0.17 4.03 5.24 -3.72 -0.02 4.01 16 15 N -0.59 -14.41 2.97 -172.33 -0.51 -14.93 16 16 C -0.26 -6.85 9.56 -15.06 -0.14 -7.00 16 17 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 18 C 0.01 0.18 5.02 -17.43 -0.09 0.09 16 19 N -0.90 -25.92 11.22 55.49 0.62 -25.30 16 20 Si 0.90 21.30 29.57 -169.99 -5.03 16.28 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.15 3.09 5.60 -3.71 -0.02 3.07 16 25 C -0.17 -1.43 9.90 -26.74 -0.26 -1.69 16 26 C -0.14 -1.42 9.13 -26.74 -0.24 -1.66 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.09 1.04 7.63 -51.93 -0.40 0.64 16 31 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.10 0.87 7.94 -51.93 -0.41 0.46 16 33 H 0.11 1.05 7.37 -51.93 -0.38 0.66 16 34 H 0.40 4.75 7.71 -40.82 -0.31 4.43 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.08 2.17 6.26 -51.93 -0.33 1.84 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 47 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -30.54 399.39 -10.79 -41.33 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.93 Total: 3.54 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.41 Total: -3.70 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.21 Total: -50.00 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.32 Total: -4.83 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.54 -10.79 -41.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593893380.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds