Wall clock time and date at job start Tue Mar 31 2020 14:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81402 * 102.99891 * 2 1 4 4 C 1.53003 * 109.46835 * 180.02562 * 3 2 1 5 5 C 1.52998 * 115.54785 * 293.26870 * 4 3 2 6 6 C 1.50703 * 109.47277 * 279.04027 * 5 4 3 7 7 O 1.21281 * 119.99760 * 6.31628 * 6 5 4 8 8 N 1.34776 * 119.99922 * 186.32189 * 6 5 4 9 9 C 1.46497 * 119.99721 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47309 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.52144 * 305.08245 * 10 9 8 12 12 C 1.53034 * 109.49873 * 184.99891 * 10 9 8 13 13 C 1.53047 * 109.52807 * 178.68997 * 12 10 9 14 14 C 1.53172 * 109.32465 * 61.37113 * 13 12 10 15 15 N 1.46926 * 108.76883 * 305.35702 * 14 13 12 16 16 C 1.36934 * 120.63181 * 233.59024 * 15 14 13 17 17 H 1.07997 * 120.00231 * 146.96561 * 16 15 14 18 18 C 1.38810 * 119.99628 * 326.96383 * 16 15 14 19 19 N 1.31618 * 120.00309 * 348.68513 * 18 16 15 20 20 Si 1.86801 * 119.99765 * 168.68082 * 18 16 15 21 21 H 1.48510 * 109.46837 * 90.00295 * 20 18 16 22 22 H 1.48502 * 109.47232 * 210.00210 * 20 18 16 23 23 H 1.48501 * 109.47357 * 330.00311 * 20 18 16 24 24 C 1.46930 * 118.73632 * 53.60993 * 15 14 13 25 25 C 1.52998 * 117.52117 * 78.96941 * 4 3 2 26 26 C 1.52993 * 117.49865 * 147.59822 * 4 3 2 27 27 H 1.08998 * 109.47431 * 299.99917 * 1 2 3 28 28 H 1.09000 * 109.47456 * 59.99943 * 1 2 3 29 29 H 1.09000 * 109.47710 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47118 * 60.00258 * 3 2 1 31 31 H 1.08996 * 109.47218 * 299.99794 * 3 2 1 32 32 H 1.09006 * 109.47368 * 159.03700 * 5 4 3 33 33 H 1.09004 * 109.47398 * 39.03876 * 5 4 3 34 34 H 0.96992 * 120.00215 * 359.97438 * 8 6 5 35 35 H 1.08997 * 109.47362 * 59.99860 * 9 8 6 36 36 H 1.09005 * 109.47413 * 299.99570 * 9 8 6 37 37 H 1.09005 * 109.46302 * 298.70529 * 12 10 9 38 38 H 1.09002 * 109.46219 * 58.67685 * 12 10 9 39 39 H 1.08994 * 109.50094 * 181.31265 * 13 12 10 40 40 H 1.09002 * 109.49549 * 301.41285 * 13 12 10 41 41 H 1.08997 * 109.58630 * 185.57642 * 14 13 12 42 42 H 1.09000 * 109.70556 * 65.21475 * 14 13 12 43 43 H 0.97000 * 119.99813 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.58149 * 186.60251 * 24 15 14 45 45 H 1.09000 * 109.70742 * 66.24836 * 24 15 14 46 46 H 1.08996 * 117.50417 * 214.97476 * 25 4 3 47 47 H 1.09002 * 117.49723 * 359.97438 * 25 4 3 48 48 H 1.09006 * 117.49767 * 359.97438 * 26 4 3 49 49 H 1.09004 * 117.49765 * 144.99188 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.4599 1.4723 1.2671 6 6 4.3548 2.5390 2.3264 7 8 3.6691 3.5205 2.1327 8 7 5.0227 2.4024 3.4890 9 6 4.9209 3.4397 4.5185 10 6 5.7684 3.0421 5.7287 11 1 5.4670 2.0535 6.0755 12 6 5.5649 4.0614 6.8519 13 6 6.3870 3.6466 8.0744 14 6 7.8729 3.6268 7.7030 15 7 8.0557 2.7601 6.5308 16 6 8.9624 1.7343 6.5562 17 1 8.7653 0.8257 6.0068 18 6 10.1349 1.8624 7.2881 19 7 10.4837 3.0356 7.7722 20 14 11.2177 0.3697 7.5860 21 1 12.2096 0.2505 6.4872 22 1 11.9290 0.5245 8.8804 23 1 10.3753 -0.8526 7.6272 24 6 7.2474 3.0154 5.3306 25 6 4.4735 1.7618 -1.3328 26 6 4.3148 3.1581 -0.7280 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8032 2.2371 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 5.5101 1.2857 1.0424 33 1 3.9971 0.5541 1.6290 34 1 5.5709 1.6174 3.6440 35 1 3.8802 3.5476 4.8239 36 1 5.2819 4.3867 4.1172 37 1 5.8895 5.0452 6.5128 38 1 4.5091 4.1000 7.1204 39 1 6.2235 4.3601 8.8819 40 1 6.0798 2.6524 8.3990 41 1 8.4533 3.2375 8.5394 42 1 8.2059 4.6373 7.4660 43 1 11.3029 3.1249 8.2839 44 1 7.4154 2.2225 4.6017 45 1 7.5265 3.9756 4.8969 46 1 5.4657 1.3114 -1.3061 47 1 3.8714 1.5212 -2.2090 48 1 3.6084 3.8365 -1.2064 49 1 5.2027 3.6265 -0.3032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593893380.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:57 Heat of formation + Delta-G solvation = -27.729108 kcal Electronic energy + Delta-G solvation = -25824.144107 eV Core-core repulsion = 22298.269914 eV Total energy + Delta-G solvation = -3525.874193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01865 -39.52127 -38.45705 -36.13793 -34.63776 -32.31157 -32.16063 -30.58903 -30.04396 -29.00890 -27.23891 -26.42696 -23.83334 -23.33521 -22.63962 -21.70390 -20.73742 -20.05250 -18.67041 -17.87230 -17.31285 -16.93521 -16.72498 -16.58298 -16.06639 -15.87590 -15.64529 -15.21073 -15.02319 -14.96098 -14.54528 -14.51914 -14.40848 -14.01041 -13.82379 -13.72604 -13.67181 -13.35152 -13.00239 -12.84626 -12.81497 -12.52617 -12.41372 -12.28477 -12.26080 -11.98407 -11.81900 -11.56820 -11.36815 -11.30619 -11.21685 -11.09118 -10.79792 -10.54651 -10.38739 -9.98779 -8.63430 -8.59509 -7.86004 -5.38660 0.72149 1.47478 1.48617 1.57970 1.66349 1.75748 2.24023 2.51019 2.99095 3.30235 3.57291 3.61626 3.75130 3.84410 3.93116 4.00803 4.02653 4.08677 4.19214 4.31939 4.35119 4.41061 4.45326 4.56482 4.59553 4.62300 4.72793 4.78755 4.82248 4.85810 4.88119 4.90202 4.94233 5.02141 5.06960 5.10634 5.11595 5.25354 5.26795 5.34676 5.41138 5.53134 5.58544 5.67561 5.78845 6.42541 6.62676 7.17050 7.32240 7.86251 8.40860 9.19890 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.002502 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.443875 B =11187.472938 C =11788.710108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.292 6.292 3 C -0.031 4.031 4 C -0.106 4.106 5 C -0.103 4.103 6 C 0.512 3.488 7 O -0.572 6.572 8 N -0.723 5.723 9 C 0.140 3.860 10 C -0.100 4.100 11 H 0.075 0.925 12 C -0.097 4.097 13 C -0.130 4.130 14 C 0.176 3.824 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.069 0.931 18 C -0.050 4.050 19 N -0.937 5.937 20 Si 0.968 3.032 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.154 3.846 25 C -0.149 4.149 26 C -0.154 4.154 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.410 0.590 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.047 0.953 42 H -0.008 1.008 43 H 0.249 0.751 44 H 0.057 0.943 45 H 0.003 0.997 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.097 0.903 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.598 -4.219 -15.479 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.065 6.065 3 C -0.179 4.179 4 C -0.108 4.108 5 C -0.143 4.143 6 C 0.300 3.700 7 O -0.452 6.452 8 N -0.375 5.375 9 C 0.016 3.984 10 C -0.120 4.120 11 H 0.094 0.906 12 C -0.135 4.135 13 C -0.169 4.169 14 C 0.050 3.950 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.086 0.914 18 C -0.245 4.245 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.029 3.971 25 C -0.186 4.186 26 C -0.193 4.193 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.246 0.754 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.010 0.990 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.021 0.979 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.115 0.885 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.299 -4.376 -15.508 24.382 hybrid contribution 0.501 0.432 0.674 0.944 sum -17.798 -3.944 -14.834 23.503 Atomic orbital electron populations 1.23440 0.92211 1.07378 1.05495 1.86911 1.09570 1.12017 1.98051 1.22790 0.96838 0.93473 1.04810 1.20608 0.91881 1.05075 0.93230 1.21276 1.03406 0.97632 0.91948 1.21028 0.78428 0.87683 0.82869 1.90651 1.41562 1.32989 1.80004 1.46091 1.50079 1.24846 1.16521 1.21191 0.99475 0.90650 0.87102 1.21713 0.95487 1.00159 0.94684 0.90634 1.21335 0.99974 0.97780 0.94418 1.22002 0.96450 1.00752 0.97722 1.20574 0.92796 0.91545 0.90080 1.44246 1.43798 1.35042 1.10178 1.19494 0.96792 0.93965 1.29075 0.91376 1.25979 0.97987 0.98764 1.01803 1.70161 1.24468 1.23562 1.40074 0.85275 0.78737 0.79683 0.76733 1.21121 1.22168 1.19134 1.21005 0.89861 0.97428 0.88821 1.23226 1.01925 0.98630 0.94847 1.22944 1.02531 0.91156 1.02694 0.90384 0.89533 0.86978 0.90885 0.89358 0.87058 0.86993 0.75420 0.91374 0.92824 0.92789 0.90290 0.91322 0.92815 0.93466 0.98978 0.94185 0.92490 0.97882 0.87475 0.87438 0.88463 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 10.76 113.37 1.22 -0.17 16 2 S -0.29 -5.12 21.59 -56.49 -1.22 -6.34 16 3 C -0.03 -0.57 5.75 71.98 0.41 -0.16 16 4 C -0.11 -1.97 0.98 -52.18 -0.05 -2.02 16 5 C -0.10 -1.96 5.60 29.85 0.17 -1.80 16 6 C 0.51 12.87 7.68 87.66 0.67 13.55 16 7 O -0.57 -17.98 14.99 -3.03 -0.05 -18.02 16 8 N -0.72 -17.70 5.33 -463.06 -2.47 -20.17 16 9 C 0.14 3.81 5.07 86.38 0.44 4.25 16 10 C -0.10 -3.09 2.37 -10.72 -0.03 -3.11 16 11 H 0.08 2.34 8.14 -2.38 -0.02 2.33 16 12 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 13 C -0.13 -4.73 6.08 30.67 0.19 -4.54 16 14 C 0.18 8.44 5.24 86.36 0.45 8.90 16 15 N -0.61 -29.96 2.97 -699.13 -2.08 -32.04 16 16 C -0.26 -14.12 9.56 84.03 0.80 -13.32 16 17 H 0.07 3.50 7.85 -2.91 -0.02 3.48 16 18 C -0.05 -2.76 5.02 84.86 0.43 -2.33 16 19 N -0.94 -55.47 11.22 21.65 0.24 -55.22 16 20 Si 0.97 44.18 29.57 68.60 2.03 46.21 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 C 0.15 6.09 5.60 86.36 0.48 6.58 16 25 C -0.15 -2.25 9.90 30.59 0.30 -1.95 16 26 C -0.15 -2.87 9.13 30.59 0.28 -2.59 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.61 7.63 -2.39 -0.02 1.59 16 31 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 32 H 0.11 1.78 7.94 -2.38 -0.02 1.76 16 33 H 0.11 2.02 7.37 -2.38 -0.02 2.01 16 34 H 0.41 8.91 7.71 -92.71 -0.71 8.19 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 2.58 6.26 -2.39 -0.01 2.56 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.06 2.12 7.14 -2.38 -0.02 2.11 16 45 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.11 1.44 8.08 -2.39 -0.02 1.42 16 47 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 49 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -66.68 399.39 2.58 -64.09 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.20 Total: 23.03 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 5.93 Total: -1.53 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -4.30 Total: -107.44 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.05 Total: -18.02 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -1.22 Total: -6.34 kcal Total: -66.68 2.58 -64.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593893380.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.366 kcal (2) G-P(sol) polarization free energy of solvation -66.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds