Wall clock time and date at job start Tue Mar 31 2020 15:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50694 * 119.99952 * 2 1 4 4 C 1.53005 * 109.47135 * 124.99982 * 3 2 1 5 5 N 1.46500 * 109.47040 * 179.97438 * 4 3 2 6 6 C 1.35312 * 125.86582 * 124.99824 * 5 4 3 7 7 C 1.35359 * 106.17441 * 179.77310 * 6 5 4 8 8 C 1.50700 * 126.74967 * 180.21133 * 7 6 5 9 9 N 1.46896 * 109.47219 * 94.99972 * 8 7 6 10 10 C 1.46901 * 110.99927 * 179.97438 * 9 8 7 11 11 H 1.09011 * 109.46708 * 35.00197 * 10 9 8 12 12 C 1.52993 * 109.47341 * 154.99840 * 10 9 8 13 13 C 1.50703 * 109.47273 * 295.00602 * 12 10 9 14 14 H 1.07998 * 119.99982 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00111 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99931 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99981 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47285 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47131 * 119.99858 * 17 15 13 20 20 H 1.48503 * 109.47363 * 239.99807 * 17 15 13 21 21 C 1.50695 * 109.47410 * 275.00294 * 10 9 8 22 22 C 1.38237 * 119.99750 * 319.72604 * 21 10 9 23 23 C 1.38240 * 119.99750 * 179.81039 * 22 21 10 24 24 C 1.38234 * 120.00103 * 0.39813 * 23 22 21 25 25 C 1.38236 * 119.99922 * 359.85406 * 24 23 22 26 26 C 1.38232 * 120.00200 * 139.99858 * 21 10 9 27 27 N 1.33772 * 106.49554 * 0.22938 * 7 6 5 28 28 N 1.28640 * 108.88426 * 359.97438 * 27 7 6 29 29 H 1.08001 * 120.00052 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.99671 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99822 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.47369 * 5.00048 * 3 2 1 33 33 H 1.09005 * 109.47267 * 245.00179 * 3 2 1 34 34 H 1.08994 * 109.47014 * 60.00109 * 4 3 2 35 35 H 1.08995 * 109.47162 * 300.00226 * 4 3 2 36 36 H 1.08002 * 126.91567 * 0.04325 * 6 5 4 37 37 H 1.08999 * 109.46539 * 215.00349 * 8 7 6 38 38 H 1.09005 * 109.47242 * 334.99469 * 8 7 6 39 39 H 1.00891 * 110.99924 * 303.95078 * 9 8 7 40 40 H 1.09005 * 109.47061 * 55.00145 * 12 10 9 41 41 H 1.09003 * 109.47770 * 175.00112 * 12 10 9 42 42 H 0.97004 * 120.00037 * 180.02562 * 16 15 13 43 43 H 1.07994 * 120.00056 * 359.97438 * 22 21 10 44 44 H 1.08002 * 119.99699 * 180.22865 * 23 22 21 45 45 H 1.07999 * 120.00019 * 179.83479 * 24 23 22 46 46 H 1.08004 * 120.00092 * 179.97438 * 25 24 23 47 47 H 1.08004 * 120.00139 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 7 3.7680 2.6015 1.1813 6 6 3.8399 3.4759 2.2114 7 6 4.6167 4.4988 1.7843 8 6 5.0035 5.7259 2.5690 9 7 6.3125 5.5110 3.2001 10 6 6.7232 6.6896 3.9749 11 1 5.8451 7.1513 4.4268 12 6 7.6978 6.2629 5.0744 13 6 6.9866 5.3680 6.0566 14 1 5.9437 5.1280 5.9113 15 6 7.6674 4.8557 7.1406 16 7 8.9375 5.1476 7.3172 17 14 6.7857 3.7471 8.3583 18 1 5.3721 3.5748 7.9373 19 1 7.4561 2.4226 8.3972 20 1 6.8278 4.3630 9.7089 21 6 7.3982 7.6806 3.0622 22 6 8.2652 7.2372 2.0810 23 6 8.8815 8.1461 1.2411 24 6 8.6370 9.4987 1.3877 25 6 7.7740 9.9423 2.3723 26 6 7.1548 9.0333 3.2096 27 7 4.9731 4.2064 0.5286 28 7 4.4520 3.0771 0.2001 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5066 1.0921 35 1 2.4773 1.2355 2.1130 36 1 3.3749 3.3756 3.1811 37 1 5.0599 6.5832 1.8982 38 1 4.2556 5.9155 3.3390 39 1 6.3041 4.6835 3.7773 40 1 8.5334 5.7224 4.6296 41 1 8.0710 7.1465 5.5922 42 1 9.4166 4.7869 8.0796 43 1 8.4592 6.1808 1.9689 44 1 9.5560 7.7994 0.4722 45 1 9.1205 10.2089 0.7333 46 1 7.5833 10.9992 2.4871 47 1 6.4804 9.3799 3.9788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593970565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:44 Heat of formation + Delta-G solvation = 134.755817 kcal Electronic energy + Delta-G solvation = -26456.750225 eV Core-core repulsion = 22834.770707 eV Total energy + Delta-G solvation = -3621.979518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.11807 -38.86586 -36.80660 -36.08668 -33.97821 -32.99249 -31.92116 -30.34576 -30.07792 -29.58706 -28.56628 -25.44807 -24.82224 -23.94310 -22.07947 -21.80057 -21.66353 -20.66531 -20.30881 -19.50406 -17.27407 -16.62135 -16.41069 -16.02076 -15.88373 -15.20137 -14.83077 -14.67550 -14.64557 -14.39519 -14.11603 -13.75842 -13.50155 -13.27896 -12.98269 -12.75307 -12.64711 -12.24806 -12.01327 -11.90852 -11.82075 -11.56324 -11.50231 -11.23892 -11.05854 -10.73689 -10.63756 -10.55432 -10.43676 -10.27719 -10.07216 -9.76991 -9.60791 -9.19012 -9.06764 -8.45546 -8.32439 -7.98919 -7.73788 -6.07254 -4.11397 1.62018 1.79174 1.95588 2.01707 2.36286 2.71733 3.24050 3.31851 3.33276 4.18750 4.30564 4.35287 4.42071 4.46436 4.58036 4.76303 4.86126 4.89231 5.09580 5.19409 5.27165 5.32533 5.41829 5.42347 5.50195 5.50639 5.57885 5.63863 5.76050 5.91867 6.09657 6.11616 6.11954 6.18690 6.23912 6.30588 6.37287 6.51892 6.63576 6.64173 6.76087 7.00070 7.08808 7.27055 7.47195 7.58510 7.62376 7.91376 7.98906 8.19470 8.29059 8.68305 8.94374 9.52686 11.03367 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007956 B = 0.003492 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.399367 B = 8015.992938 C =11002.274278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C -0.106 4.106 4 C 0.122 3.878 5 N -0.296 5.296 6 C -0.048 4.048 7 C -0.002 4.002 8 C 0.144 3.856 9 N -0.672 5.672 10 C 0.130 3.870 11 H 0.042 0.958 12 C 0.028 3.972 13 C -0.525 4.525 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.056 4.056 22 C -0.083 4.083 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.124 4.124 27 N -0.249 5.249 28 N -0.093 5.093 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.188 0.812 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.358 0.642 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.261 0.739 43 H 0.128 0.872 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 -4.409 -12.037 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.175 4.175 3 C -0.144 4.144 4 C 0.000 4.000 5 N -0.090 5.090 6 C -0.199 4.199 7 C -0.140 4.140 8 C 0.013 3.987 9 N -0.306 5.306 10 C 0.020 3.980 11 H 0.060 0.940 12 C -0.009 4.009 13 C -0.563 4.563 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.056 4.056 22 C -0.101 4.101 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.142 4.142 27 N -0.116 5.116 28 N -0.073 5.073 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.205 0.795 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.179 0.821 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.146 0.854 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.590 -4.523 -13.910 19.299 hybrid contribution -1.398 -0.729 2.717 3.142 sum -13.989 -5.252 -11.193 18.669 Atomic orbital electron populations 1.23945 0.95878 1.02222 0.99913 1.22765 0.96016 0.97751 1.00967 1.21018 0.97995 0.96620 0.98737 1.22031 0.94633 0.81887 1.01428 1.47309 1.34318 1.17216 1.10143 1.23456 1.07467 0.92597 0.96386 1.21982 0.99928 0.99012 0.93118 1.20123 0.91265 0.91942 0.95394 1.60387 1.25568 1.06744 1.37930 1.20636 0.97539 0.88426 0.91367 0.93972 1.19260 0.94056 0.96762 0.90837 1.21150 0.96558 1.29852 1.08748 0.92836 1.24980 0.94781 0.96422 0.97831 1.69973 1.08589 1.44516 1.29499 0.86582 0.79672 0.80593 0.81365 1.19886 1.21027 1.21026 1.20175 0.96317 0.93585 0.95567 1.21057 0.94976 1.00097 0.93945 1.21127 1.00422 0.93375 0.99842 1.20966 0.99744 0.95665 0.99149 1.20952 0.98398 0.98805 0.96600 1.21018 1.00777 0.93052 0.99379 1.75081 1.17735 1.05889 1.12920 1.78242 1.08627 1.07153 1.13237 0.88431 0.88059 0.86695 0.90647 0.88969 0.88216 0.87656 0.79528 0.89965 0.93924 0.82057 0.95285 0.95719 0.92921 0.85382 0.86911 0.87173 0.87026 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 14.32 29.01 0.42 -0.58 16 2 C -0.16 -0.90 9.52 -36.03 -0.34 -1.24 16 3 C -0.11 -0.75 5.78 -27.88 -0.16 -0.91 16 4 C 0.12 0.93 6.44 -4.04 -0.03 0.91 16 5 N -0.30 -3.62 3.44 -61.26 -0.21 -3.83 16 6 C -0.05 -0.62 11.50 -17.04 -0.20 -0.81 16 7 C 0.00 -0.03 6.76 -82.77 -0.56 -0.59 16 8 C 0.14 2.31 6.04 -4.98 -0.03 2.28 16 9 N -0.67 -12.58 5.55 -109.22 -0.61 -13.18 16 10 C 0.13 2.60 2.19 -68.87 -0.15 2.45 16 11 H 0.04 0.84 7.66 -51.92 -0.40 0.44 16 12 C 0.03 0.69 4.55 -27.89 -0.13 0.57 16 13 C -0.52 -13.71 8.12 -34.44 -0.28 -13.98 16 14 H 0.05 1.33 7.49 -52.49 -0.39 0.94 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 17 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.06 -1.05 4.71 -104.63 -0.49 -1.55 16 22 C -0.08 -1.54 9.32 -39.58 -0.37 -1.90 16 23 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 24 C -0.14 -2.08 10.05 -39.58 -0.40 -2.47 16 25 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 26 C -0.12 -2.13 9.67 -39.58 -0.38 -2.51 16 27 N -0.25 -4.39 12.41 33.29 0.41 -3.97 16 28 N -0.09 -1.45 12.91 60.35 0.78 -0.67 16 29 H 0.10 0.52 7.84 -52.49 -0.41 0.11 16 30 H 0.10 0.45 8.06 -52.49 -0.42 0.02 16 31 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 33 H 0.09 0.77 8.12 -51.93 -0.42 0.34 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.11 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.19 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.08 1.37 8.00 -51.93 -0.42 0.95 16 38 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 39 H 0.36 7.16 7.20 -39.30 -0.28 6.88 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.13 2.50 7.73 -52.49 -0.41 2.09 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 45 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 46 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 47 H 0.11 1.82 8.04 -52.48 -0.42 1.40 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -31.64 400.04 -9.21 -40.85 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.33 Total: 7.96 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -3.99 Total: -23.67 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.11 Total: -46.74 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.64 -9.21 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593970565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.604 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds