Wall clock time and date at job start Tue Mar 31 2020 15:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50694 * 119.99952 * 2 1 4 4 C 1.53005 * 109.47135 * 124.99982 * 3 2 1 5 5 N 1.46500 * 109.47040 * 179.97438 * 4 3 2 6 6 C 1.35312 * 125.86582 * 124.99824 * 5 4 3 7 7 C 1.35359 * 106.17441 * 179.77310 * 6 5 4 8 8 C 1.50700 * 126.74967 * 180.21133 * 7 6 5 9 9 N 1.46896 * 109.47219 * 94.99972 * 8 7 6 10 10 C 1.46901 * 110.99927 * 179.97438 * 9 8 7 11 11 H 1.09011 * 109.46708 * 35.00197 * 10 9 8 12 12 C 1.52993 * 109.47341 * 154.99840 * 10 9 8 13 13 C 1.50703 * 109.47273 * 295.00602 * 12 10 9 14 14 H 1.07998 * 119.99982 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00111 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99931 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99981 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47285 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47131 * 119.99858 * 17 15 13 20 20 H 1.48503 * 109.47363 * 239.99807 * 17 15 13 21 21 C 1.50695 * 109.47410 * 275.00294 * 10 9 8 22 22 C 1.38237 * 119.99750 * 319.72604 * 21 10 9 23 23 C 1.38240 * 119.99750 * 179.81039 * 22 21 10 24 24 C 1.38234 * 120.00103 * 0.39813 * 23 22 21 25 25 C 1.38236 * 119.99922 * 359.85406 * 24 23 22 26 26 C 1.38232 * 120.00200 * 139.99858 * 21 10 9 27 27 N 1.33772 * 106.49554 * 0.22938 * 7 6 5 28 28 N 1.28640 * 108.88426 * 359.97438 * 27 7 6 29 29 H 1.08001 * 120.00052 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.99671 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99822 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.47369 * 5.00048 * 3 2 1 33 33 H 1.09005 * 109.47267 * 245.00179 * 3 2 1 34 34 H 1.08994 * 109.47014 * 60.00109 * 4 3 2 35 35 H 1.08995 * 109.47162 * 300.00226 * 4 3 2 36 36 H 1.08002 * 126.91567 * 0.04325 * 6 5 4 37 37 H 1.08999 * 109.46539 * 215.00349 * 8 7 6 38 38 H 1.09005 * 109.47242 * 334.99469 * 8 7 6 39 39 H 1.00891 * 110.99924 * 303.95078 * 9 8 7 40 40 H 1.09005 * 109.47061 * 55.00145 * 12 10 9 41 41 H 1.09003 * 109.47770 * 175.00112 * 12 10 9 42 42 H 0.97004 * 120.00037 * 180.02562 * 16 15 13 43 43 H 1.07994 * 120.00056 * 359.97438 * 22 21 10 44 44 H 1.08002 * 119.99699 * 180.22865 * 23 22 21 45 45 H 1.07999 * 120.00019 * 179.83479 * 24 23 22 46 46 H 1.08004 * 120.00092 * 179.97438 * 25 24 23 47 47 H 1.08004 * 120.00139 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 7 3.7680 2.6015 1.1813 6 6 3.8399 3.4759 2.2114 7 6 4.6167 4.4988 1.7843 8 6 5.0035 5.7259 2.5690 9 7 6.3125 5.5110 3.2001 10 6 6.7232 6.6896 3.9749 11 1 5.8451 7.1513 4.4268 12 6 7.6978 6.2629 5.0744 13 6 6.9866 5.3680 6.0566 14 1 5.9437 5.1280 5.9113 15 6 7.6674 4.8557 7.1406 16 7 8.9375 5.1476 7.3172 17 14 6.7857 3.7471 8.3583 18 1 5.3721 3.5748 7.9373 19 1 7.4561 2.4226 8.3972 20 1 6.8278 4.3630 9.7089 21 6 7.3982 7.6806 3.0622 22 6 8.2652 7.2372 2.0810 23 6 8.8815 8.1461 1.2411 24 6 8.6370 9.4987 1.3877 25 6 7.7740 9.9423 2.3723 26 6 7.1548 9.0333 3.2096 27 7 4.9731 4.2064 0.5286 28 7 4.4520 3.0771 0.2001 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5066 1.0921 35 1 2.4773 1.2355 2.1130 36 1 3.3749 3.3756 3.1811 37 1 5.0599 6.5832 1.8982 38 1 4.2556 5.9155 3.3390 39 1 6.3041 4.6835 3.7773 40 1 8.5334 5.7224 4.6296 41 1 8.0710 7.1465 5.5922 42 1 9.4166 4.7869 8.0796 43 1 8.4592 6.1808 1.9689 44 1 9.5560 7.7994 0.4722 45 1 9.1205 10.2089 0.7333 46 1 7.5833 10.9992 2.4871 47 1 6.4804 9.3799 3.9788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593970565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:43 Heat of formation + Delta-G solvation = 116.669177 kcal Electronic energy + Delta-G solvation = -26457.534521 eV Core-core repulsion = 22834.770707 eV Total energy + Delta-G solvation = -3622.763814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.19699 -40.24839 -37.79666 -37.22733 -35.12721 -34.54629 -33.36044 -31.64379 -31.25870 -30.54453 -30.15770 -27.04266 -25.59757 -25.45869 -23.66162 -23.20048 -22.71018 -21.71468 -21.01611 -20.78177 -18.55306 -18.19850 -17.49251 -17.35801 -16.77260 -16.40218 -16.35757 -16.03126 -15.90498 -15.52660 -15.15737 -14.89531 -14.79229 -14.44814 -14.06103 -13.97947 -13.76956 -13.56573 -13.45936 -13.28393 -13.08458 -12.82108 -12.66496 -12.53538 -12.36903 -12.33968 -12.03171 -11.93069 -11.77689 -11.64479 -11.42382 -11.10837 -11.00588 -10.57055 -10.30049 -10.20370 -9.65108 -9.39235 -9.20028 -8.15719 -6.27394 0.61737 0.65285 0.69178 1.25141 1.42689 1.43282 1.51061 1.55132 1.58654 2.42900 3.05786 3.16780 3.33163 3.57860 3.64311 3.77050 3.97224 4.02414 4.15237 4.16788 4.23444 4.27269 4.32329 4.36154 4.43983 4.45677 4.58217 4.63909 4.74566 4.82202 4.85653 4.92087 4.95297 5.01926 5.04931 5.19025 5.25998 5.33394 5.46462 5.53444 5.67047 5.70651 5.73371 5.76286 5.81664 5.84200 5.90452 6.19970 6.29904 6.40535 6.63709 6.87786 7.41630 7.56017 8.96062 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007956 B = 0.003492 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.399367 B = 8015.992938 C =11002.274278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C -0.098 4.098 4 C 0.112 3.888 5 N -0.284 5.284 6 C -0.032 4.032 7 C -0.027 4.027 8 C 0.153 3.847 9 N -0.677 5.677 10 C 0.146 3.854 11 H 0.044 0.956 12 C 0.041 3.959 13 C -0.529 4.529 14 H 0.068 0.932 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.253 1.253 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.080 4.080 22 C -0.104 4.104 23 C -0.135 4.135 24 C -0.132 4.132 25 C -0.126 4.126 26 C -0.136 4.136 27 N -0.291 5.291 28 N -0.114 5.114 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.224 0.776 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.348 0.652 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.261 0.739 43 H 0.106 0.894 44 H 0.132 0.868 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.839 -4.750 -11.925 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.179 4.179 3 C -0.137 4.137 4 C -0.007 4.007 5 N -0.078 5.078 6 C -0.184 4.184 7 C -0.166 4.166 8 C 0.022 3.978 9 N -0.310 5.310 10 C 0.036 3.964 11 H 0.062 0.938 12 C 0.004 3.996 13 C -0.567 4.567 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.176 1.176 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.144 4.144 26 C -0.154 4.154 27 N -0.158 5.158 28 N -0.093 5.093 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.154 0.846 36 H 0.240 0.760 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.169 0.831 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.070 0.930 43 H 0.124 0.876 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.897 -4.876 -13.840 20.910 hybrid contribution -0.702 -0.616 2.613 2.775 sum -15.598 -5.492 -11.227 19.988 Atomic orbital electron populations 1.24103 0.95882 1.02838 0.99034 1.22754 0.96096 0.97373 1.01681 1.20918 0.97616 0.97377 0.97746 1.22503 0.94921 0.80141 1.03168 1.47680 1.33032 1.17941 1.09148 1.23920 1.05832 0.91303 0.97361 1.22009 1.01608 0.99986 0.93036 1.20017 0.90202 0.92143 0.95411 1.60351 1.27748 1.05668 1.37250 1.20296 0.96322 0.89185 0.90586 0.93770 1.19016 0.93975 0.94776 0.91877 1.21533 0.97193 1.29312 1.08631 0.91349 1.25941 0.95436 0.98114 1.00087 1.70134 1.10543 1.46230 1.30414 0.85424 0.79358 0.78047 0.78343 1.17610 1.21022 1.21077 1.20155 0.97412 0.94314 0.96147 1.21006 0.96333 0.99629 0.95316 1.21400 1.00300 0.93931 0.99693 1.21395 0.98940 0.95551 0.99079 1.21360 0.97268 1.00185 0.95552 1.21237 1.01410 0.92560 1.00206 1.75020 1.19286 1.07170 1.14286 1.78152 1.09717 1.07006 1.14472 0.88524 0.86828 0.85506 0.91196 0.90671 0.87045 0.84608 0.75978 0.91010 0.92029 0.83139 0.98956 0.99000 0.92991 0.87604 0.84970 0.83604 0.83664 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 14.32 67.77 0.97 -0.64 16 2 C -0.16 -1.52 9.52 25.64 0.24 -1.28 16 3 C -0.10 -1.26 5.78 29.85 0.17 -1.09 16 4 C 0.11 1.46 6.44 86.38 0.56 2.02 16 5 N -0.28 -6.57 3.44 -347.73 -1.20 -7.76 16 6 C -0.03 -0.76 11.50 83.49 0.96 0.20 16 7 C -0.03 -0.85 6.76 41.60 0.28 -0.57 16 8 C 0.15 4.93 6.04 85.56 0.52 5.45 16 9 N -0.68 -26.13 5.55 -499.47 -2.77 -28.91 16 10 C 0.15 6.06 2.19 44.17 0.10 6.16 16 11 H 0.04 1.79 7.66 -2.38 -0.02 1.77 16 12 C 0.04 2.13 4.55 29.85 0.14 2.27 16 13 C -0.53 -28.06 8.12 25.60 0.21 -27.85 16 14 H 0.07 3.35 7.49 -2.91 -0.02 3.33 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 17 Si 0.96 42.14 29.54 68.60 2.03 44.16 16 18 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C -0.08 -3.11 4.71 -19.87 -0.09 -3.21 16 22 C -0.10 -4.05 9.32 22.27 0.21 -3.84 16 23 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 24 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 25 C -0.13 -3.61 10.05 22.27 0.22 -3.38 16 26 C -0.14 -4.62 9.67 22.27 0.22 -4.41 16 27 N -0.29 -10.47 12.41 -48.60 -0.60 -11.07 16 28 N -0.11 -3.57 12.91 37.02 0.48 -3.09 16 29 H 0.10 0.86 7.84 -2.91 -0.02 0.84 16 30 H 0.11 0.73 8.06 -2.91 -0.02 0.71 16 31 H 0.13 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.07 0.97 7.79 -2.38 -0.02 0.95 16 33 H 0.07 1.23 8.12 -2.38 -0.02 1.21 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.14 0.99 8.07 -2.39 -0.02 0.97 16 36 H 0.22 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.07 2.45 8.00 -2.39 -0.02 2.43 16 38 H 0.06 1.74 8.06 -2.38 -0.02 1.72 16 39 H 0.35 14.28 7.20 -89.70 -0.65 13.63 16 40 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.11 4.47 7.73 -2.91 -0.02 4.45 16 44 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 45 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 46 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 47 H 0.12 3.88 8.04 -2.91 -0.02 3.85 16 Total: -1.00 -72.21 400.04 4.12 -68.08 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.30 Total: 31.54 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 5.60 Total: -37.21 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.81 Total: -106.57 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -72.21 4.12 -68.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593970565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.751 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds