Wall clock time and date at job start Tue Mar 31 2020 14:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 11 11 C 1.35346 * 126.75407 * 124.99384 * 10 9 7 12 12 N 1.35312 * 106.17696 * 180.02562 * 11 10 9 13 13 C 1.46499 * 125.86838 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47078 * 125.00105 * 13 12 11 15 15 H 1.08999 * 110.62951 * 308.10430 * 14 13 12 16 16 C 1.55144 * 110.70663 * 71.39962 * 14 13 12 17 17 C 1.54903 * 101.65384 * 154.03464 * 16 14 13 18 18 N 1.47842 * 104.79933 * 322.93137 * 17 16 14 19 19 C 1.46894 * 111.00330 * 146.36131 * 18 17 16 20 20 C 1.50700 * 109.46947 * 49.15813 * 19 18 17 21 21 C 1.38236 * 120.00058 * 269.72498 * 20 19 18 22 22 C 1.38236 * 120.00139 * 179.76895 * 21 20 19 23 23 C 1.38238 * 119.99381 * 0.48434 * 22 21 20 24 24 C 1.38231 * 120.00620 * 359.78978 * 23 22 21 25 25 C 1.38234 * 120.00030 * 90.00392 * 20 19 18 26 26 C 1.47443 * 108.56494 * 24.09477 * 18 17 16 27 27 N 1.28715 * 108.26330 * 0.02562 * 12 11 10 28 28 N 1.28643 * 110.17747 * 359.72473 * 27 12 11 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 31 31 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 32 32 H 1.08004 * 126.90911 * 359.97188 * 11 10 9 33 33 H 1.09006 * 109.46871 * 244.99507 * 13 12 11 34 34 H 1.09000 * 109.47055 * 5.00068 * 13 12 11 35 35 H 1.09001 * 110.99182 * 272.13112 * 16 14 13 36 36 H 1.09005 * 110.99197 * 35.94261 * 16 14 13 37 37 H 1.09001 * 110.37157 * 204.09972 * 17 16 14 38 38 H 1.09001 * 110.37143 * 81.75839 * 17 16 14 39 39 H 1.09003 * 109.47170 * 169.16189 * 19 18 17 40 40 H 1.09005 * 109.47214 * 289.15861 * 19 18 17 41 41 H 1.07997 * 119.99755 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.00131 * 180.25754 * 22 21 20 43 43 H 1.08007 * 119.99716 * 179.77252 * 23 22 21 44 44 H 1.08000 * 120.00395 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99707 * 359.97438 * 25 20 19 46 46 H 1.09006 * 109.89291 * 239.60596 * 26 18 17 47 47 H 1.09001 * 110.02720 * 118.49642 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0139 -2.6150 -0.0013 11 6 4.8705 -3.1702 -0.8900 12 7 5.0351 -4.4561 -0.5021 13 6 5.8804 -5.4515 -1.1661 14 6 6.8656 -6.0402 -0.1543 15 1 7.4020 -5.2467 0.3659 16 6 6.1311 -6.9631 0.8535 17 6 7.2678 -7.9230 1.2847 18 7 8.0604 -8.1454 0.0567 19 6 9.4849 -8.3148 0.3729 20 6 9.6367 -9.3245 1.4813 21 6 9.6366 -8.9088 2.7997 22 6 9.7711 -9.8354 3.8166 23 6 9.9157 -11.1767 3.5147 24 6 9.9214 -11.5918 2.1962 25 6 9.7818 -10.6656 1.1795 26 6 7.8529 -7.0011 -0.8497 27 7 4.3213 -4.6543 0.5505 28 7 3.7041 -3.5742 0.8781 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 -0.8895 31 1 3.8746 -0.6808 0.8905 32 1 5.3297 -2.6848 -1.7386 33 1 5.2551 -6.2478 -1.5699 34 1 6.4326 -4.9764 -1.9769 35 1 5.7575 -6.3931 1.7042 36 1 5.3231 -7.5087 0.3661 37 1 6.8532 -8.8647 1.6445 38 1 7.8839 -7.4596 2.0552 39 1 10.0145 -8.6653 -0.5130 40 1 9.9024 -7.3597 0.6917 41 1 9.5282 -7.8604 3.0353 42 1 9.7669 -9.5111 4.8468 43 1 10.0244 -11.9003 4.3091 44 1 10.0348 -12.6396 1.9604 45 1 9.7860 -10.9899 0.1493 46 1 7.4309 -7.3471 -1.7933 47 1 8.7996 -6.4924 -1.0315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594655484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:48 Heat of formation + Delta-G solvation = 129.946658 kcal Electronic energy + Delta-G solvation = -26288.755561 eV Core-core repulsion = 22666.567502 eV Total energy + Delta-G solvation = -3622.188059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.60110 -40.22935 -38.81028 -35.32801 -33.51102 -32.77316 -31.29921 -31.26152 -30.61266 -29.75743 -28.01870 -26.60158 -25.23606 -23.10588 -23.01234 -22.01477 -21.52189 -20.83372 -20.76229 -19.87710 -17.29665 -16.96920 -16.70167 -16.35304 -16.02131 -15.54987 -15.48799 -15.04331 -14.35045 -14.29788 -14.14968 -13.95791 -13.72555 -13.68933 -13.21884 -13.04618 -12.84423 -12.56486 -12.44602 -12.29054 -11.90799 -11.86239 -11.57497 -11.32814 -11.30099 -11.13094 -11.00568 -10.89604 -10.67470 -10.51792 -10.11068 -9.79144 -9.41304 -9.31127 -9.24568 -9.16196 -8.64001 -8.54068 -8.25474 -5.99146 -3.97058 0.96797 1.06774 2.16613 2.72086 3.32436 3.33524 3.39773 3.40021 3.41812 3.80276 4.12627 4.26980 4.39053 4.45973 4.46622 4.55998 4.66924 4.72233 4.78214 4.86558 4.93910 5.03558 5.11111 5.14224 5.15916 5.24014 5.25301 5.31607 5.33789 5.44018 5.59126 5.64693 5.69731 5.71089 5.79640 5.94410 5.97002 6.06625 6.10723 6.17541 6.23594 6.25303 6.57621 6.64121 6.68472 6.86763 7.09485 7.12613 7.22488 7.73749 8.58587 9.09056 9.25584 9.59897 11.14377 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.030579 B = 0.001937 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.454713 B =14449.450688 C =14732.174062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.060 3.940 10 C 0.038 3.962 11 C -0.081 4.081 12 N -0.302 5.302 13 C 0.132 3.868 14 C -0.121 4.121 15 H 0.082 0.918 16 C -0.117 4.117 17 C 0.041 3.959 18 N -0.521 5.521 19 C 0.088 3.912 20 C -0.083 4.083 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.099 4.099 26 C 0.050 3.950 27 N -0.100 5.100 28 N -0.257 5.257 29 H 0.263 0.737 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.181 0.819 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.084 0.916 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.417 -21.034 -0.481 32.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.213 1.213 7 C -0.544 4.544 8 H 0.094 0.906 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.230 4.230 12 N -0.098 5.098 13 C 0.009 3.991 14 C -0.141 4.141 15 H 0.101 0.899 16 C -0.155 4.155 17 C -0.086 4.086 18 N -0.244 5.244 19 C -0.040 4.040 20 C -0.084 4.084 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.117 4.117 26 C -0.078 4.078 27 N -0.079 5.079 28 N -0.124 5.124 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.198 0.802 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.103 0.897 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 24.682 -22.405 0.312 33.336 hybrid contribution 1.021 2.326 -0.551 2.600 sum 25.704 -20.079 -0.238 32.617 Atomic orbital electron populations 1.69906 1.06227 1.26784 1.51040 1.24985 0.94771 0.98871 0.94772 0.86822 0.80255 0.83838 0.78625 1.20151 1.19014 1.21312 1.20921 0.88177 0.94835 1.50514 0.90592 1.18144 0.97744 0.84630 0.97423 1.22479 0.95990 0.99141 0.92369 1.23324 1.08145 0.85703 1.05839 1.47157 1.32283 1.09486 1.20856 1.21906 0.91762 0.90896 0.94495 1.22667 0.96195 0.98369 0.96914 0.89918 1.22794 0.97125 0.96125 0.99474 1.23157 0.94401 0.99628 0.91433 1.63801 1.06854 1.39926 1.13866 1.21279 0.89718 0.96388 0.96593 1.19745 1.00147 0.94546 0.93939 1.21118 0.99990 0.99600 0.92379 1.21142 1.00166 0.93343 0.99204 1.21176 1.00111 0.95956 0.96620 1.21168 1.00381 0.99564 0.92923 1.21030 0.98919 0.92345 0.99440 1.22812 0.98221 0.89722 0.97043 1.78198 1.06795 1.21383 1.01515 1.75113 1.17645 0.96002 1.23658 0.92698 0.94774 0.94963 0.80187 0.88511 0.88069 0.89411 0.90203 0.90094 0.93215 0.89767 0.93770 0.86323 0.86064 0.86180 0.86083 0.85916 0.89732 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.51 -14.86 9.64 -34.44 -0.33 -15.19 16 8 H 0.08 2.50 7.98 -52.49 -0.42 2.08 16 9 C 0.06 1.45 4.62 -29.03 -0.13 1.32 16 10 C 0.04 0.84 6.44 -82.78 -0.53 0.30 16 11 C -0.08 -1.40 11.49 -17.05 -0.20 -1.60 16 12 N -0.30 -4.74 3.44 -61.26 -0.21 -4.95 16 13 C 0.13 1.31 5.81 -4.04 -0.02 1.29 16 14 C -0.12 -1.12 3.12 -88.79 -0.28 -1.40 16 15 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.12 -1.25 5.59 -24.59 -0.14 -1.39 16 17 C 0.04 0.38 5.35 -2.30 -0.01 0.37 16 18 N -0.52 -4.40 5.31 -232.69 -1.24 -5.64 16 19 C 0.09 0.65 5.02 -4.98 -0.02 0.62 16 20 C -0.08 -0.67 4.63 -104.62 -0.48 -1.15 16 21 C -0.11 -0.90 8.20 -39.58 -0.32 -1.22 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 24 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.10 -0.75 9.70 -39.58 -0.38 -1.14 16 26 C 0.05 0.37 6.46 -2.84 -0.02 0.35 16 27 N -0.10 -1.95 11.49 60.35 0.69 -1.26 16 28 N -0.26 -6.04 12.40 33.29 0.41 -5.62 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.03 0.77 7.18 -51.93 -0.37 0.40 16 31 H 0.03 0.78 7.57 -51.93 -0.39 0.39 16 32 H 0.18 2.37 8.06 -52.48 -0.42 1.95 16 33 H 0.10 0.90 8.00 -51.93 -0.42 0.48 16 34 H 0.10 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.09 1.13 7.56 -51.93 -0.39 0.73 16 36 H 0.08 0.90 7.94 -51.93 -0.41 0.48 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.46 5.72 -51.93 -0.30 0.16 16 39 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 40 H 0.04 0.32 7.90 -51.93 -0.41 -0.09 16 41 H 0.12 0.88 7.12 -52.49 -0.37 0.50 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.08 0.55 7.82 -51.93 -0.41 0.15 16 47 H 0.06 0.38 7.50 -51.93 -0.39 -0.01 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -34.89 379.85 -9.93 -44.82 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.25 Total: -1.61 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -4.17 Total: -20.77 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.43 Total: -44.89 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.89 -9.93 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594655484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.763 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds