Wall clock time and date at job start Tue Mar 31 2020 14:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 11 11 C 1.35346 * 126.75407 * 124.99384 * 10 9 7 12 12 N 1.35312 * 106.17696 * 180.02562 * 11 10 9 13 13 C 1.46499 * 125.86838 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47078 * 125.00105 * 13 12 11 15 15 H 1.08999 * 110.62951 * 308.10430 * 14 13 12 16 16 C 1.55144 * 110.70663 * 71.39962 * 14 13 12 17 17 C 1.54903 * 101.65384 * 154.03464 * 16 14 13 18 18 N 1.47842 * 104.79933 * 322.93137 * 17 16 14 19 19 C 1.46894 * 111.00330 * 146.36131 * 18 17 16 20 20 C 1.50700 * 109.46947 * 49.15813 * 19 18 17 21 21 C 1.38236 * 120.00058 * 269.72498 * 20 19 18 22 22 C 1.38236 * 120.00139 * 179.76895 * 21 20 19 23 23 C 1.38238 * 119.99381 * 0.48434 * 22 21 20 24 24 C 1.38231 * 120.00620 * 359.78978 * 23 22 21 25 25 C 1.38234 * 120.00030 * 90.00392 * 20 19 18 26 26 C 1.47443 * 108.56494 * 24.09477 * 18 17 16 27 27 N 1.28715 * 108.26330 * 0.02562 * 12 11 10 28 28 N 1.28643 * 110.17747 * 359.72473 * 27 12 11 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 31 31 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 32 32 H 1.08004 * 126.90911 * 359.97188 * 11 10 9 33 33 H 1.09006 * 109.46871 * 244.99507 * 13 12 11 34 34 H 1.09000 * 109.47055 * 5.00068 * 13 12 11 35 35 H 1.09001 * 110.99182 * 272.13112 * 16 14 13 36 36 H 1.09005 * 110.99197 * 35.94261 * 16 14 13 37 37 H 1.09001 * 110.37157 * 204.09972 * 17 16 14 38 38 H 1.09001 * 110.37143 * 81.75839 * 17 16 14 39 39 H 1.09003 * 109.47170 * 169.16189 * 19 18 17 40 40 H 1.09005 * 109.47214 * 289.15861 * 19 18 17 41 41 H 1.07997 * 119.99755 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.00131 * 180.25754 * 22 21 20 43 43 H 1.08007 * 119.99716 * 179.77252 * 23 22 21 44 44 H 1.08000 * 120.00395 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99707 * 359.97438 * 25 20 19 46 46 H 1.09006 * 109.89291 * 239.60596 * 26 18 17 47 47 H 1.09001 * 110.02720 * 118.49642 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0139 -2.6150 -0.0013 11 6 4.8705 -3.1702 -0.8900 12 7 5.0351 -4.4561 -0.5021 13 6 5.8804 -5.4515 -1.1661 14 6 6.8656 -6.0402 -0.1543 15 1 7.4020 -5.2467 0.3659 16 6 6.1311 -6.9631 0.8535 17 6 7.2678 -7.9230 1.2847 18 7 8.0604 -8.1454 0.0567 19 6 9.4849 -8.3148 0.3729 20 6 9.6367 -9.3245 1.4813 21 6 9.6366 -8.9088 2.7997 22 6 9.7711 -9.8354 3.8166 23 6 9.9157 -11.1767 3.5147 24 6 9.9214 -11.5918 2.1962 25 6 9.7818 -10.6656 1.1795 26 6 7.8529 -7.0011 -0.8497 27 7 4.3213 -4.6543 0.5505 28 7 3.7041 -3.5742 0.8781 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 -0.8895 31 1 3.8746 -0.6808 0.8905 32 1 5.3297 -2.6848 -1.7386 33 1 5.2551 -6.2478 -1.5699 34 1 6.4326 -4.9764 -1.9769 35 1 5.7575 -6.3931 1.7042 36 1 5.3231 -7.5087 0.3661 37 1 6.8532 -8.8647 1.6445 38 1 7.8839 -7.4596 2.0552 39 1 10.0145 -8.6653 -0.5130 40 1 9.9024 -7.3597 0.6917 41 1 9.5282 -7.8604 3.0353 42 1 9.7669 -9.5111 4.8468 43 1 10.0244 -11.9003 4.3091 44 1 10.0348 -12.6396 1.9604 45 1 9.7860 -10.9899 0.1493 46 1 7.4309 -7.3471 -1.7933 47 1 8.7996 -6.4924 -1.0315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594655484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:47 Heat of formation + Delta-G solvation = 106.817150 kcal Electronic energy + Delta-G solvation = -26289.758532 eV Core-core repulsion = 22666.567502 eV Total energy + Delta-G solvation = -3623.191030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.03274 -40.85367 -39.45315 -36.42488 -35.26226 -33.89995 -33.09525 -31.82140 -31.40046 -30.55472 -29.78318 -27.42399 -26.02514 -25.04545 -23.58775 -22.86424 -22.56107 -21.99884 -21.46284 -21.08359 -18.90997 -18.26659 -17.68443 -17.31746 -16.85231 -16.44317 -16.27238 -16.09370 -15.77772 -15.47380 -15.18524 -14.94183 -14.71539 -14.33143 -14.28998 -14.13401 -13.96917 -13.72132 -13.48077 -13.22185 -13.11382 -12.89341 -12.54962 -12.51051 -12.34705 -12.18159 -12.01012 -11.83609 -11.79565 -11.72468 -11.70350 -11.59504 -11.35601 -10.82218 -10.73335 -9.84574 -9.80185 -9.72888 -9.26716 -8.23892 -6.29152 0.41353 0.51159 0.80346 1.41640 1.44984 1.56028 1.61156 1.78812 2.41165 2.75960 3.10211 3.17332 3.37635 3.53259 3.62871 3.79860 3.83650 3.95853 4.05442 4.14145 4.17600 4.23031 4.30224 4.31505 4.39861 4.45103 4.48262 4.51281 4.62041 4.67375 4.71152 4.78949 4.80480 4.92131 5.02825 5.08865 5.10063 5.12782 5.17162 5.22386 5.36190 5.40525 5.55778 5.63311 5.63488 5.68723 5.87916 5.93111 6.04962 6.13591 6.33074 6.76212 7.32430 7.75616 8.93940 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.030579 B = 0.001937 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.454713 B =14449.450688 C =14732.174062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.000 4.000 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.229 1.229 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.016 0.984 9 C 0.067 3.933 10 C -0.012 4.012 11 C -0.048 4.048 12 N -0.285 5.285 13 C 0.119 3.881 14 C -0.112 4.112 15 H 0.075 0.925 16 C -0.119 4.119 17 C 0.051 3.949 18 N -0.527 5.527 19 C 0.089 3.911 20 C -0.094 4.094 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.109 4.109 26 C 0.057 3.943 27 N -0.113 5.113 28 N -0.317 5.317 29 H 0.266 0.734 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.148 0.852 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.118 0.882 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.101 0.899 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.091 -20.785 -2.701 35.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.151 1.151 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.035 0.965 9 C 0.028 3.972 10 C -0.150 4.150 11 C -0.199 4.199 12 N -0.080 5.080 13 C 0.000 4.000 14 C -0.133 4.133 15 H 0.093 0.907 16 C -0.158 4.158 17 C -0.076 4.076 18 N -0.251 5.251 19 C -0.038 4.038 20 C -0.094 4.094 21 C -0.144 4.144 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.071 4.071 27 N -0.092 5.092 28 N -0.183 5.183 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.248 0.752 33 H 0.126 0.874 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.065 0.935 41 H 0.136 0.864 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.151 0.849 46 H 0.119 0.881 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 28.388 -22.216 -1.908 36.098 hybrid contribution -0.124 2.034 0.140 2.043 sum 28.264 -20.181 -1.768 34.774 Atomic orbital electron populations 1.70097 1.08662 1.28233 1.52669 1.26111 0.95732 1.03808 0.93957 0.85538 0.79953 0.77219 0.79157 1.19724 1.15139 1.20901 1.21142 0.91223 0.92741 1.50489 0.96546 1.17968 0.93980 0.86917 0.98359 1.22414 0.99144 0.98675 0.94808 1.23846 1.05460 0.85563 1.05001 1.47625 1.30877 1.10127 1.19375 1.22521 0.91641 0.90570 0.95275 1.22586 0.96112 0.98154 0.96403 0.90703 1.22707 0.97494 0.96541 0.99016 1.22969 0.94044 0.98557 0.92049 1.63811 1.07419 1.40546 1.13276 1.21322 0.89054 0.96399 0.96982 1.19897 1.00389 0.95042 0.94114 1.21242 1.00572 0.99804 0.92828 1.21381 1.00216 0.93725 0.99775 1.21458 0.99745 0.96170 0.97330 1.21461 0.99856 1.00537 0.92878 1.21251 0.98926 0.92363 1.00211 1.22854 0.98524 0.88865 0.96866 1.78100 1.07586 1.20285 1.03199 1.75032 1.19876 0.97458 1.25939 0.92477 0.92005 0.95074 0.75158 0.87366 0.83457 0.92342 0.91086 0.91317 0.93360 0.88348 0.93514 0.86358 0.85059 0.84507 0.84307 0.84850 0.88125 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.10 13.96 21.45 0.30 -61.80 16 2 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 3 Si 0.96 43.78 27.47 68.60 1.88 45.67 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.23 -9.04 6.54 99.48 0.65 -8.38 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.52 -31.45 9.64 25.60 0.25 -31.21 16 8 H 0.02 1.14 7.98 -2.91 -0.02 1.12 16 9 C 0.07 3.21 4.62 29.10 0.13 3.35 16 10 C -0.01 -0.53 6.44 41.60 0.27 -0.26 16 11 C -0.05 -1.52 11.49 83.49 0.96 -0.56 16 12 N -0.28 -8.33 3.44 -347.73 -1.20 -9.53 16 13 C 0.12 1.94 5.81 86.38 0.50 2.45 16 14 C -0.11 -1.80 3.12 -9.61 -0.03 -1.83 16 15 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 16 C -0.12 -2.53 5.59 31.98 0.18 -2.35 16 17 C 0.05 0.94 5.35 86.77 0.46 1.41 16 18 N -0.53 -7.81 5.31 -890.10 -4.72 -12.54 16 19 C 0.09 1.14 5.02 85.56 0.43 1.57 16 20 C -0.09 -1.41 4.63 -19.87 -0.09 -1.50 16 21 C -0.13 -1.97 8.20 22.27 0.18 -1.79 16 22 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 23 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 24 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 25 C -0.11 -1.52 9.70 22.27 0.22 -1.31 16 26 C 0.06 0.63 6.46 86.65 0.56 1.19 16 27 N -0.11 -4.46 11.49 37.02 0.43 -4.03 16 28 N -0.32 -15.39 12.40 -48.60 -0.60 -15.99 16 29 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 30 H 0.06 2.60 7.18 -2.38 -0.02 2.59 16 31 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 32 H 0.23 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.11 1.63 8.00 -2.38 -0.02 1.61 16 34 H 0.15 1.15 8.07 -2.39 -0.02 1.13 16 35 H 0.06 1.58 7.56 -2.39 -0.02 1.57 16 36 H 0.07 1.61 7.94 -2.38 -0.02 1.59 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 0.90 5.72 -2.39 -0.01 0.88 16 39 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 40 H 0.05 0.57 7.90 -2.38 -0.02 0.55 16 41 H 0.12 1.76 7.12 -2.91 -0.02 1.74 16 42 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 46 H 0.10 0.85 7.82 -2.38 -0.02 0.84 16 47 H 0.08 0.63 7.50 -2.39 -0.02 0.62 16 Total: -1.00 -82.57 379.85 2.14 -80.44 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.90 Total: 12.85 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 5.15 Total: -35.06 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -5.80 Total: -103.89 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.67 kcal Total: -82.57 2.14 -80.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594655484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.252 kcal (2) G-P(sol) polarization free energy of solvation -82.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds