Wall clock time and date at job start Tue Mar 31 2020 14:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81404 * 102.99914 * 2 1 4 4 H 1.09000 * 109.47280 * 54.99710 * 3 2 1 5 5 C 1.53006 * 109.46797 * 295.00140 * 3 2 1 6 6 C 1.53003 * 109.46828 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47135 * 59.99788 * 6 5 3 8 8 C 1.53006 * 109.47436 * 299.99840 * 7 6 5 9 9 C 1.52998 * 109.47204 * 174.99905 * 3 2 1 10 10 H 1.08994 * 109.46813 * 60.00012 * 9 3 2 11 11 N 1.46502 * 109.47064 * 299.99830 * 9 3 2 12 12 C 1.34777 * 119.99799 * 154.99752 * 11 9 3 13 13 O 1.21587 * 119.99640 * 4.86465 * 12 11 9 14 14 N 1.34775 * 119.99674 * 184.85900 * 12 11 9 15 15 C 1.46923 * 120.63382 * 354.58805 * 14 12 11 16 16 C 1.53186 * 108.77738 * 233.58868 * 15 14 12 17 17 C 1.53042 * 109.31136 * 305.36301 * 16 15 14 18 18 C 1.53040 * 109.53542 * 61.36667 * 17 16 15 19 19 H 1.09001 * 109.49946 * 58.62264 * 18 17 16 20 20 C 1.50709 * 109.49515 * 178.68256 * 18 17 16 21 21 H 1.07994 * 119.99781 * 5.60052 * 20 18 17 22 22 C 1.37872 * 119.99877 * 185.60156 * 20 18 17 23 23 N 1.31511 * 119.99977 * 198.29380 * 22 20 18 24 24 Si 1.86805 * 120.00226 * 18.29482 * 22 20 18 25 25 H 1.48498 * 109.47368 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.47006 * 300.00422 * 24 22 20 27 27 H 1.48508 * 109.47078 * 59.99956 * 24 22 20 28 28 C 1.46928 * 120.62922 * 174.56594 * 14 12 11 29 29 H 1.09001 * 109.47093 * 60.00306 * 1 2 3 30 30 H 1.09001 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47473 * 299.99954 * 1 2 3 32 32 H 1.08999 * 109.47646 * 59.99865 * 5 3 2 33 33 H 1.08994 * 109.46798 * 299.99390 * 5 3 2 34 34 H 1.09000 * 109.47319 * 299.99612 * 6 5 3 35 35 H 1.08997 * 109.47013 * 179.97438 * 6 5 3 36 36 H 1.08996 * 109.47524 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47161 * 59.99727 * 7 6 5 38 38 H 1.09000 * 109.46854 * 300.00076 * 8 7 6 39 39 H 1.08999 * 109.47646 * 180.02562 * 8 7 6 40 40 H 0.96998 * 119.99904 * 335.00365 * 11 9 3 41 41 H 1.09003 * 109.58410 * 113.79749 * 15 14 12 42 42 H 1.09007 * 109.58568 * 353.37393 * 15 14 12 43 43 H 1.08999 * 109.50143 * 185.41603 * 16 15 14 44 44 H 1.08999 * 109.52773 * 65.33169 * 16 15 14 45 45 H 1.08993 * 109.46107 * 301.34546 * 17 16 15 46 46 H 1.09009 * 109.45048 * 181.37912 * 17 16 15 47 47 H 0.97003 * 120.00227 * 354.96398 * 23 22 20 48 48 H 1.08999 * 109.58394 * 6.62902 * 28 14 12 49 49 H 1.08997 * 109.58990 * 246.20166 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 2.0863 3.8925 -1.3071 7 6 3.6011 4.0668 -1.1811 8 6 4.0804 3.4328 0.1263 9 6 3.7369 1.9413 0.1257 10 1 4.2295 1.4547 -0.7160 11 7 4.1958 1.3342 1.3776 12 6 5.4693 0.9081 1.4927 13 8 6.2607 1.1069 0.5913 14 7 5.8654 0.2617 2.6071 15 6 4.9562 0.1178 3.7522 16 6 5.6578 0.6443 5.0080 17 6 6.9993 -0.0727 5.1766 18 6 7.8908 0.2186 3.9672 19 1 8.0408 1.2944 3.8765 20 6 9.2234 -0.4614 4.1493 21 1 9.3847 -1.1161 4.9928 22 6 10.2364 -0.2476 3.2388 23 7 11.2497 -1.0835 3.1742 24 14 10.1699 1.2294 2.0971 25 1 11.3687 1.2321 1.2207 26 1 8.9456 1.1534 1.2602 27 1 10.1422 2.4768 2.9025 28 6 7.2145 -0.3128 2.6996 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.6635 2.2778 -1.3970 33 1 2.2354 1.9150 -2.1491 34 1 1.5933 4.3789 -0.4654 35 1 1.7452 4.3441 -2.2387 36 1 3.8459 5.1289 -1.1805 37 1 4.0940 3.5804 -2.0229 38 1 3.5875 3.9191 0.9681 39 1 5.1595 3.5573 0.2164 40 1 3.5832 1.2388 2.1235 41 1 4.7038 -0.9338 3.8884 42 1 4.0482 0.6934 3.5725 43 1 5.0323 0.4555 5.8805 44 1 5.8283 1.7162 4.9078 45 1 6.8300 -1.1467 5.2526 46 1 7.4895 0.2827 6.0831 47 1 11.3220 -1.8085 3.8146 48 1 7.7965 -0.0213 1.8254 49 1 7.1463 -1.3995 2.7500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595651047.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:06 Heat of formation + Delta-G solvation = -48.479621 kcal Electronic energy + Delta-G solvation = -27161.795751 eV Core-core repulsion = 23635.021748 eV Total energy + Delta-G solvation = -3526.774003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18404 -38.60382 -36.80152 -34.18108 -33.21386 -31.84977 -31.30636 -30.35561 -29.13466 -29.05795 -24.91484 -24.50185 -23.10329 -22.36833 -21.78253 -20.37912 -19.79857 -18.79565 -17.82986 -17.43073 -16.72515 -16.14873 -15.24933 -14.97315 -14.67061 -14.52747 -14.22522 -13.99133 -13.84898 -13.79036 -13.71305 -13.42036 -13.20955 -13.08116 -12.85615 -12.82630 -12.36578 -12.20251 -11.76876 -11.76251 -11.52590 -11.35908 -11.16224 -10.88909 -10.82934 -10.51012 -10.38961 -10.22601 -10.14303 -9.98766 -9.64582 -9.57024 -9.38306 -8.87170 -8.81535 -8.11609 -7.91615 -7.81885 -6.40382 -4.03892 1.38877 2.31758 3.03164 3.55528 3.65604 3.67959 3.78350 4.17185 4.24242 4.48488 4.59760 4.65565 4.76059 4.80252 4.84837 4.93642 4.98894 5.13297 5.17981 5.21006 5.32393 5.34059 5.40211 5.46043 5.51544 5.56522 5.72713 5.74351 5.82165 5.88817 5.89374 6.05533 6.12558 6.17291 6.19191 6.35108 6.47670 6.67796 6.70350 6.75876 6.84150 7.04365 7.24828 7.49389 7.53571 8.17825 8.41410 8.42307 8.94863 9.08750 9.65297 10.98734 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.003751 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.367561 B = 7462.736786 C = 8336.675578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.240 6.240 3 C -0.062 4.062 4 H 0.089 0.911 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.126 4.126 9 C 0.189 3.811 10 H 0.094 0.906 11 N -0.746 5.746 12 C 0.704 3.296 13 O -0.588 6.588 14 N -0.624 5.624 15 C 0.118 3.882 16 C -0.136 4.136 17 C -0.099 4.099 18 C 0.012 3.988 19 H 0.023 0.977 20 C -0.601 4.601 21 H 0.057 0.943 22 C 0.036 3.964 23 N -0.903 5.903 24 Si 1.028 2.972 25 H -0.287 1.287 26 H -0.252 1.252 27 H -0.286 1.286 28 C 0.119 3.881 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.393 0.607 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.267 0.733 48 H 0.093 0.907 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.616 8.266 -5.588 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.011 6.011 3 C -0.192 4.192 4 H 0.107 0.893 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.167 4.167 9 C 0.081 3.919 10 H 0.112 0.888 11 N -0.404 5.404 12 C 0.406 3.594 13 O -0.466 6.466 14 N -0.360 5.360 15 C -0.006 4.006 16 C -0.174 4.174 17 C -0.137 4.137 18 C -0.008 4.008 19 H 0.041 0.959 20 C -0.639 4.639 21 H 0.075 0.925 22 C -0.170 4.170 23 N -0.536 5.536 24 Si 0.856 3.144 25 H -0.213 1.213 26 H -0.177 1.177 27 H -0.213 1.213 28 C -0.002 4.002 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.229 0.771 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.111 0.889 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.561 8.151 -7.496 26.034 hybrid contribution -2.035 0.144 1.911 2.795 sum -25.596 8.295 -5.585 27.480 Atomic orbital electron populations 1.23426 0.95361 1.06355 1.04636 1.87407 1.05775 1.10177 1.97791 1.23593 0.99522 0.94313 1.01733 0.89291 1.21836 1.00907 0.96105 0.96152 1.21592 0.96703 0.95312 1.02053 1.21529 0.95189 1.00953 0.98012 1.21990 1.02825 0.94176 0.97711 1.20428 0.89684 0.93663 0.88085 0.88754 1.45329 1.11554 1.67081 1.16458 1.15905 0.81893 0.78464 0.83155 1.90912 1.52418 1.62572 1.40732 1.47695 1.16641 1.58172 1.13530 1.21494 0.91668 1.00592 0.86814 1.21992 0.98447 1.00705 0.96283 1.21441 0.93461 0.99056 0.99768 1.19301 0.94733 0.96463 0.90283 0.95918 1.21899 0.96387 1.31803 1.13856 0.92495 1.25776 0.93185 1.00004 0.98047 1.70881 1.34209 1.14528 1.34027 0.84268 0.77529 0.75667 0.76966 1.21320 1.17690 1.21292 1.22584 0.78693 0.96655 1.02253 0.90621 0.88212 0.90718 0.91599 0.90242 0.91909 0.91428 0.91458 0.91366 0.91888 0.90149 0.77054 0.91833 0.91881 0.92014 0.92156 0.92930 0.92744 0.92292 0.88930 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 10.45 101.05 1.06 0.18 16 2 S -0.24 -2.53 21.38 -107.50 -2.30 -4.83 16 3 C -0.06 -0.57 2.21 -26.73 -0.06 -0.63 16 4 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 5 C -0.11 -0.83 5.11 -26.73 -0.14 -0.96 16 6 C -0.12 -0.81 5.92 -26.73 -0.16 -0.96 16 7 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 8 C -0.13 -1.42 5.50 -26.70 -0.15 -1.56 16 9 C 0.19 2.31 1.86 -67.90 -0.13 2.19 16 10 H 0.09 1.42 7.65 -51.93 -0.40 1.02 16 11 N -0.75 -10.56 4.52 -58.65 -0.27 -10.83 16 12 C 0.70 13.56 8.26 -86.92 -0.72 12.85 16 13 O -0.59 -13.79 15.44 5.29 0.08 -13.71 16 14 N -0.62 -12.00 2.97 -178.50 -0.53 -12.53 16 15 C 0.12 1.75 6.39 -3.72 -0.02 1.73 16 16 C -0.14 -2.09 6.08 -26.61 -0.16 -2.25 16 17 C -0.10 -1.96 5.11 -26.69 -0.14 -2.09 16 18 C 0.01 0.29 1.83 -91.65 -0.17 0.12 16 19 H 0.02 0.57 6.78 -51.93 -0.35 0.22 16 20 C -0.60 -17.00 8.82 -34.44 -0.30 -17.31 16 21 H 0.06 1.71 7.99 -52.49 -0.42 1.29 16 22 C 0.04 1.06 5.34 -17.82 -0.10 0.96 16 23 N -0.90 -28.27 13.70 55.43 0.76 -27.51 16 24 Si 1.03 26.83 26.46 -169.99 -4.50 22.33 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 26 H -0.25 -6.57 5.52 56.52 0.31 -6.26 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 C 0.12 2.77 5.39 -3.71 -0.02 2.75 16 29 H 0.07 0.43 7.14 -51.92 -0.37 0.06 16 30 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.07 0.41 6.92 -51.93 -0.36 0.05 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 40 H 0.39 4.68 6.09 -40.82 -0.25 4.43 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.74 5.65 -51.93 -0.29 0.44 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 47 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16 48 H 0.09 2.42 3.75 -51.93 -0.19 2.23 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -33.58 379.35 -11.03 -44.61 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.64 Total: 2.93 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.36 Total: -6.18 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.04 Total: -50.87 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.08 Total: -13.71 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -4.50 Total: 22.33 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.30 Total: -4.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.58 -11.03 -44.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595651047.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.865 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds