Wall clock time and date at job start Tue Mar 31 2020 14:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81404 * 102.99914 * 2 1 4 4 H 1.09000 * 109.47280 * 54.99710 * 3 2 1 5 5 C 1.53006 * 109.46797 * 295.00140 * 3 2 1 6 6 C 1.53003 * 109.46828 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47135 * 59.99788 * 6 5 3 8 8 C 1.53006 * 109.47436 * 299.99840 * 7 6 5 9 9 C 1.52998 * 109.47204 * 174.99905 * 3 2 1 10 10 H 1.08994 * 109.46813 * 60.00012 * 9 3 2 11 11 N 1.46502 * 109.47064 * 299.99830 * 9 3 2 12 12 C 1.34777 * 119.99799 * 154.99752 * 11 9 3 13 13 O 1.21587 * 119.99640 * 4.86465 * 12 11 9 14 14 N 1.34775 * 119.99674 * 184.85900 * 12 11 9 15 15 C 1.46923 * 120.63382 * 354.58805 * 14 12 11 16 16 C 1.53186 * 108.77738 * 233.58868 * 15 14 12 17 17 C 1.53042 * 109.31136 * 305.36301 * 16 15 14 18 18 C 1.53040 * 109.53542 * 61.36667 * 17 16 15 19 19 H 1.09001 * 109.49946 * 58.62264 * 18 17 16 20 20 C 1.50709 * 109.49515 * 178.68256 * 18 17 16 21 21 H 1.07994 * 119.99781 * 5.60052 * 20 18 17 22 22 C 1.37872 * 119.99877 * 185.60156 * 20 18 17 23 23 N 1.31511 * 119.99977 * 198.29380 * 22 20 18 24 24 Si 1.86805 * 120.00226 * 18.29482 * 22 20 18 25 25 H 1.48498 * 109.47368 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.47006 * 300.00422 * 24 22 20 27 27 H 1.48508 * 109.47078 * 59.99956 * 24 22 20 28 28 C 1.46928 * 120.62922 * 174.56594 * 14 12 11 29 29 H 1.09001 * 109.47093 * 60.00306 * 1 2 3 30 30 H 1.09001 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47473 * 299.99954 * 1 2 3 32 32 H 1.08999 * 109.47646 * 59.99865 * 5 3 2 33 33 H 1.08994 * 109.46798 * 299.99390 * 5 3 2 34 34 H 1.09000 * 109.47319 * 299.99612 * 6 5 3 35 35 H 1.08997 * 109.47013 * 179.97438 * 6 5 3 36 36 H 1.08996 * 109.47524 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47161 * 59.99727 * 7 6 5 38 38 H 1.09000 * 109.46854 * 300.00076 * 8 7 6 39 39 H 1.08999 * 109.47646 * 180.02562 * 8 7 6 40 40 H 0.96998 * 119.99904 * 335.00365 * 11 9 3 41 41 H 1.09003 * 109.58410 * 113.79749 * 15 14 12 42 42 H 1.09007 * 109.58568 * 353.37393 * 15 14 12 43 43 H 1.08999 * 109.50143 * 185.41603 * 16 15 14 44 44 H 1.08999 * 109.52773 * 65.33169 * 16 15 14 45 45 H 1.08993 * 109.46107 * 301.34546 * 17 16 15 46 46 H 1.09009 * 109.45048 * 181.37912 * 17 16 15 47 47 H 0.97003 * 120.00227 * 354.96398 * 23 22 20 48 48 H 1.08999 * 109.58394 * 6.62902 * 28 14 12 49 49 H 1.08997 * 109.58990 * 246.20166 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 2.0863 3.8925 -1.3071 7 6 3.6011 4.0668 -1.1811 8 6 4.0804 3.4328 0.1263 9 6 3.7369 1.9413 0.1257 10 1 4.2295 1.4547 -0.7160 11 7 4.1958 1.3342 1.3776 12 6 5.4693 0.9081 1.4927 13 8 6.2607 1.1069 0.5913 14 7 5.8654 0.2617 2.6071 15 6 4.9562 0.1178 3.7522 16 6 5.6578 0.6443 5.0080 17 6 6.9993 -0.0727 5.1766 18 6 7.8908 0.2186 3.9672 19 1 8.0408 1.2944 3.8765 20 6 9.2234 -0.4614 4.1493 21 1 9.3847 -1.1161 4.9928 22 6 10.2364 -0.2476 3.2388 23 7 11.2497 -1.0835 3.1742 24 14 10.1699 1.2294 2.0971 25 1 11.3687 1.2321 1.2207 26 1 8.9456 1.1534 1.2602 27 1 10.1422 2.4768 2.9025 28 6 7.2145 -0.3128 2.6996 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.6635 2.2778 -1.3970 33 1 2.2354 1.9150 -2.1491 34 1 1.5933 4.3789 -0.4654 35 1 1.7452 4.3441 -2.2387 36 1 3.8459 5.1289 -1.1805 37 1 4.0940 3.5804 -2.0229 38 1 3.5875 3.9191 0.9681 39 1 5.1595 3.5573 0.2164 40 1 3.5832 1.2388 2.1235 41 1 4.7038 -0.9338 3.8884 42 1 4.0482 0.6934 3.5725 43 1 5.0323 0.4555 5.8805 44 1 5.8283 1.7162 4.9078 45 1 6.8300 -1.1467 5.2526 46 1 7.4895 0.2827 6.0831 47 1 11.3220 -1.8085 3.8146 48 1 7.7965 -0.0213 1.8254 49 1 7.1463 -1.3995 2.7500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595651047.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:05 Heat of formation + Delta-G solvation = -69.431677 kcal Electronic energy + Delta-G solvation = -27162.704300 eV Core-core repulsion = 23635.021748 eV Total energy + Delta-G solvation = -3527.682552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55747 -39.66066 -38.29305 -35.64140 -34.99166 -33.51623 -32.06208 -32.01875 -30.18321 -29.57425 -26.69470 -26.14747 -23.85468 -23.38897 -23.34518 -21.47885 -21.14752 -20.26176 -19.75198 -19.08102 -17.71804 -17.28987 -16.46375 -16.22538 -15.89663 -15.56105 -15.38392 -15.30560 -15.24561 -15.17967 -14.86363 -14.49370 -14.29452 -14.25185 -13.95279 -13.82840 -13.75410 -13.58506 -13.17410 -12.85059 -12.73123 -12.56305 -12.25143 -12.14562 -12.03069 -11.96102 -11.73646 -11.58708 -11.54758 -11.38681 -11.31104 -11.10899 -10.87036 -10.68743 -10.41166 -10.14423 -9.38719 -8.76556 -8.67591 -6.40180 0.70060 1.40353 1.50920 1.66582 1.67392 1.70251 2.18317 2.40694 2.93582 3.03401 3.43520 3.75065 3.94973 3.96989 4.06809 4.09529 4.13525 4.17402 4.25915 4.37349 4.38937 4.40692 4.41879 4.46040 4.58345 4.65981 4.72315 4.76083 4.85630 4.92151 4.95965 4.97621 4.98851 5.10379 5.13461 5.15804 5.18406 5.22253 5.31890 5.44401 5.45329 5.54466 5.56731 5.62495 6.01407 6.03241 6.12043 6.58745 7.05314 7.35068 7.61480 8.61370 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.003751 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.367561 B = 7462.736786 C = 8336.675578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.314 6.314 3 C -0.041 4.041 4 H 0.112 0.888 5 C -0.107 4.107 6 C -0.109 4.109 7 C -0.117 4.117 8 C -0.122 4.122 9 C 0.186 3.814 10 H 0.058 0.942 11 N -0.724 5.724 12 C 0.699 3.301 13 O -0.638 6.638 14 N -0.628 5.628 15 C 0.113 3.887 16 C -0.125 4.125 17 C -0.098 4.098 18 C 0.011 3.989 19 H 0.014 0.986 20 C -0.597 4.597 21 H 0.030 0.970 22 C -0.008 4.008 23 N -0.936 5.936 24 Si 1.068 2.932 25 H -0.289 1.289 26 H -0.256 1.256 27 H -0.267 1.267 28 C 0.132 3.868 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.407 0.593 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.257 0.743 48 H 0.059 0.941 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.362 10.350 -4.982 32.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.085 6.085 3 C -0.170 4.170 4 H 0.130 0.870 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.162 4.162 9 C 0.080 3.920 10 H 0.076 0.924 11 N -0.382 5.382 12 C 0.401 3.599 13 O -0.520 6.520 14 N -0.364 5.364 15 C -0.009 4.009 16 C -0.163 4.163 17 C -0.136 4.136 18 C -0.009 4.009 19 H 0.032 0.968 20 C -0.636 4.636 21 H 0.049 0.951 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.892 3.108 25 H -0.216 1.216 26 H -0.182 1.182 27 H -0.192 1.192 28 C 0.009 3.991 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.247 0.753 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -28.384 10.251 -6.849 30.946 hybrid contribution -0.613 -0.576 1.750 1.941 sum -28.997 9.675 -5.100 30.991 Atomic orbital electron populations 1.23444 0.91095 1.07158 1.06114 1.87708 1.10552 1.12280 1.98008 1.23477 0.96667 0.93253 1.03633 0.86967 1.21847 1.02058 0.96263 0.94526 1.21562 0.94729 0.94878 1.03679 1.21529 0.96932 1.01121 0.95945 1.21921 1.00642 0.93654 0.99987 1.20530 0.91866 0.93793 0.85832 0.92422 1.45130 1.09672 1.65773 1.17601 1.16102 0.83006 0.78379 0.82448 1.90878 1.54226 1.64395 1.42474 1.47569 1.15746 1.57974 1.15144 1.21834 0.91965 1.02244 0.84822 1.21933 0.96268 0.99926 0.98190 1.21368 0.95304 0.99625 0.97264 1.19245 0.93649 0.95136 0.92834 0.96804 1.22178 0.98559 1.30629 1.12214 0.95132 1.26786 0.93077 1.01329 0.99617 1.70966 1.35749 1.15509 1.34962 0.83714 0.77014 0.74185 0.75858 1.21551 1.18171 1.19194 1.21975 0.80935 0.95986 1.00246 0.89193 0.87785 0.89092 0.89260 0.91763 0.90178 0.89809 0.90345 0.92887 0.89878 0.94026 0.75334 0.90625 0.87919 0.87689 0.92138 0.93179 0.93037 0.93374 0.92258 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.45 113.37 1.19 0.11 16 2 S -0.31 -5.98 21.38 -56.49 -1.21 -7.19 16 3 C -0.04 -0.64 2.21 30.60 0.07 -0.57 16 4 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.11 -1.28 5.11 30.60 0.16 -1.12 16 6 C -0.11 -1.10 5.92 30.59 0.18 -0.92 16 7 C -0.12 -1.86 5.92 30.60 0.18 -1.68 16 8 C -0.12 -2.59 5.50 30.61 0.17 -2.42 16 9 C 0.19 4.41 1.86 45.01 0.08 4.50 16 10 H 0.06 1.82 7.65 -2.39 -0.02 1.80 16 11 N -0.72 -19.46 4.52 -457.73 -2.07 -21.53 16 12 C 0.70 26.94 8.26 179.05 1.48 28.41 16 13 O -0.64 -31.11 15.44 -3.99 -0.06 -31.17 16 14 N -0.63 -23.72 2.97 -836.92 -2.49 -26.21 16 15 C 0.11 2.98 6.39 86.36 0.55 3.54 16 16 C -0.13 -3.38 6.08 30.67 0.19 -3.20 16 17 C -0.10 -3.72 5.11 30.62 0.16 -3.56 16 18 C 0.01 0.55 1.83 -11.46 -0.02 0.53 16 19 H 0.01 0.70 6.78 -2.39 -0.02 0.68 16 20 C -0.60 -34.87 8.82 25.60 0.23 -34.64 16 21 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 22 C -0.01 -0.49 5.34 84.65 0.45 -0.04 16 23 N -0.94 -60.89 13.70 21.45 0.29 -60.59 16 24 Si 1.07 56.45 26.46 68.60 1.82 58.26 16 25 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 26 H -0.26 -13.79 5.52 99.48 0.55 -13.24 16 27 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 28 C 0.13 6.25 5.39 86.36 0.47 6.72 16 29 H 0.09 0.65 7.14 -2.39 -0.02 0.63 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.71 6.92 -2.39 -0.02 0.69 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.04 1.21 8.11 -2.39 -0.02 1.19 16 40 H 0.41 8.37 6.09 -92.71 -0.57 7.80 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.10 1.91 5.65 -2.38 -0.01 1.89 16 43 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.26 16.65 8.73 -92.71 -0.81 15.85 16 48 H 0.06 3.22 3.75 -2.39 -0.01 3.21 16 49 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -79.37 379.35 1.97 -77.41 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.16 Total: 15.39 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 5.52 Total: -4.36 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.26 Total: -108.34 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.06 Total: -31.17 kcal Atomic # 14 Polarization: 56.45 SS G_CDS: 1.82 Total: 58.26 kcal Atomic # 16 Polarization: -5.98 SS G_CDS: -1.21 Total: -7.19 kcal Total: -79.37 1.97 -77.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595651047.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.977 kcal (2) G-P(sol) polarization free energy of solvation -79.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds