Wall clock time and date at job start Tue Mar 31 2020 14:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81392 * 103.00136 * 2 1 4 4 H 1.09004 * 109.47173 * 54.99880 * 3 2 1 5 5 C 1.53006 * 109.47109 * 294.99999 * 3 2 1 6 6 C 1.53000 * 109.46925 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47255 * 59.99845 * 6 5 3 8 8 C 1.52994 * 109.47330 * 299.99682 * 7 6 5 9 9 C 1.53001 * 109.46996 * 60.00201 * 8 7 6 10 10 H 1.09003 * 109.47753 * 59.99904 * 9 8 7 11 11 N 1.46501 * 109.47438 * 179.97438 * 9 8 7 12 12 C 1.34771 * 120.00040 * 275.00004 * 11 9 8 13 13 O 1.21592 * 119.99887 * 355.00744 * 12 11 9 14 14 N 1.34778 * 120.00192 * 175.00359 * 12 11 9 15 15 C 1.46931 * 120.62809 * 4.94370 * 14 12 11 16 16 C 1.53625 * 108.54238 * 126.36552 * 15 14 12 17 17 C 1.53046 * 109.23975 * 54.85431 * 16 15 14 18 18 C 1.53034 * 109.53842 * 298.50741 * 17 16 15 19 19 H 1.08994 * 109.50056 * 301.41572 * 18 17 16 20 20 C 1.50703 * 109.49551 * 181.31547 * 18 17 16 21 21 H 1.08000 * 120.00110 * 0.16876 * 20 18 17 22 22 C 1.37880 * 119.99893 * 180.16393 * 20 18 17 23 23 N 1.31514 * 119.99853 * 180.02562 * 22 20 18 24 24 Si 1.86801 * 120.00067 * 0.02562 * 22 20 18 25 25 H 1.48498 * 109.47324 * 90.00148 * 24 22 20 26 26 H 1.48503 * 109.47092 * 210.00188 * 24 22 20 27 27 H 1.48500 * 109.47018 * 329.99840 * 24 22 20 28 28 C 1.46927 * 120.63031 * 185.21675 * 14 12 11 29 29 H 1.08997 * 109.47065 * 300.00408 * 1 2 3 30 30 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46643 * 60.00093 * 1 2 3 32 32 H 1.08994 * 109.46969 * 299.99917 * 5 3 2 33 33 H 1.09000 * 109.46710 * 60.00158 * 5 3 2 34 34 H 1.09004 * 109.47195 * 299.99781 * 6 5 3 35 35 H 1.09001 * 109.46682 * 179.97438 * 6 5 3 36 36 H 1.08999 * 109.46885 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46634 * 60.00162 * 7 6 5 38 38 H 1.08994 * 109.47152 * 300.00172 * 8 7 6 39 39 H 1.08995 * 109.47113 * 179.97438 * 8 7 6 40 40 H 0.97000 * 120.00002 * 94.99436 * 11 9 8 41 41 H 1.08999 * 109.58100 * 246.19841 * 15 14 12 42 42 H 1.09000 * 109.58332 * 6.62542 * 15 14 12 43 43 H 1.09003 * 109.63525 * 294.86561 * 16 15 14 44 44 H 1.08999 * 109.43026 * 174.72277 * 16 15 14 45 45 H 1.08998 * 109.45680 * 178.48679 * 17 16 15 46 46 H 1.08999 * 109.44600 * 58.52360 * 17 16 15 47 47 H 0.97006 * 119.99542 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.58981 * 353.37942 * 28 14 12 49 49 H 1.09004 * 109.57909 * 113.66177 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 2.0877 3.8922 -1.3076 7 6 3.6027 4.0652 -1.1822 8 6 4.0819 3.4313 0.1252 9 6 3.7372 1.9406 0.1254 10 1 4.2294 1.4536 -0.7164 11 7 4.1966 1.3333 1.3770 12 6 5.4699 0.9067 1.4914 13 8 6.2117 0.9421 0.5287 14 7 5.9210 0.4409 2.6729 15 6 5.0095 0.2906 3.8155 16 6 5.1155 -1.1499 4.3388 17 6 6.5791 -1.4645 4.6570 18 6 7.4157 -1.3534 3.3804 19 1 7.0296 -2.0444 2.6311 20 6 8.8509 -1.6948 3.6884 21 1 9.1376 -1.9668 4.6935 22 6 9.7979 -1.6600 2.6869 23 7 11.0503 -1.9584 2.9555 24 14 9.3022 -1.1890 0.9485 25 1 9.4290 0.2807 0.7786 26 1 10.1892 -1.8780 -0.0230 27 1 7.8943 -1.5956 0.7080 28 6 7.3347 0.0794 2.8446 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 -0.8900 32 1 2.2355 1.9149 -2.1491 33 1 0.6636 2.2778 -1.3969 34 1 1.5954 4.3791 -0.4658 35 1 1.7466 4.3438 -2.2392 36 1 3.8483 5.1272 -1.1828 37 1 4.0949 3.5783 -2.0241 38 1 3.5896 3.9182 0.9669 39 1 5.1612 3.5542 0.2143 40 1 3.5844 1.2383 2.1233 41 1 5.2919 0.9899 4.6025 42 1 3.9868 0.4904 3.4958 43 1 4.7510 -1.8428 3.5804 44 1 4.5164 -1.2520 5.2436 45 1 6.6549 -2.4768 5.0540 46 1 6.9500 -0.7555 5.3972 47 1 11.7165 -1.9343 2.2508 48 1 7.8466 0.1399 1.8842 49 1 7.8033 0.7635 3.5522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595651048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:09 Heat of formation + Delta-G solvation = -40.712775 kcal Electronic energy + Delta-G solvation = -27245.668542 eV Core-core repulsion = 23719.231335 eV Total energy + Delta-G solvation = -3526.437207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23745 -38.64886 -36.84288 -34.22868 -33.16990 -31.85689 -31.33889 -30.48262 -29.19299 -29.04985 -25.14894 -24.67530 -23.13645 -22.42304 -21.96998 -20.40656 -19.93062 -18.89285 -17.86538 -16.85752 -16.60956 -16.16265 -15.22757 -15.19557 -14.68276 -14.57840 -14.36387 -14.09326 -13.88368 -13.78236 -13.71478 -13.59607 -13.23092 -13.03703 -12.84839 -12.78022 -12.39774 -12.20723 -12.10279 -11.80269 -11.54127 -11.30562 -11.13596 -10.99190 -10.92380 -10.55063 -10.53226 -10.31616 -10.02976 -9.97918 -9.73187 -9.58719 -9.16394 -9.02419 -8.90914 -8.52208 -7.92748 -7.84271 -6.03917 -4.05334 1.39563 2.32827 2.97929 3.46585 3.54719 3.62441 3.70302 4.13392 4.21648 4.46450 4.50917 4.62877 4.73725 4.80330 4.86043 4.90491 4.96961 5.09909 5.16271 5.19207 5.29115 5.33733 5.38951 5.44278 5.50847 5.54134 5.69957 5.72595 5.79964 5.84584 5.86209 6.05033 6.06712 6.12873 6.17080 6.24612 6.47568 6.60996 6.66772 6.69772 6.79929 6.96141 7.19394 7.40323 7.53677 7.80566 8.35045 8.54685 8.98740 9.03132 9.58251 11.07862 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.003874 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.347372 B = 7226.236207 C = 7969.994429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.238 6.238 3 C -0.063 4.063 4 H 0.089 0.911 5 C -0.111 4.111 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.125 4.125 9 C 0.186 3.814 10 H 0.096 0.904 11 N -0.745 5.745 12 C 0.705 3.295 13 O -0.592 6.592 14 N -0.624 5.624 15 C 0.117 3.883 16 C -0.135 4.135 17 C -0.099 4.099 18 C 0.004 3.996 19 H 0.031 0.969 20 C -0.516 4.516 21 H 0.077 0.923 22 C 0.073 3.927 23 N -0.898 5.898 24 Si 0.881 3.119 25 H -0.274 1.274 26 H -0.298 1.298 27 H -0.260 1.260 28 C 0.120 3.880 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.394 0.606 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.264 0.736 48 H 0.079 0.921 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.749 11.425 -4.578 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.009 6.009 3 C -0.192 4.192 4 H 0.107 0.893 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.166 4.166 9 C 0.078 3.922 10 H 0.114 0.886 11 N -0.403 5.403 12 C 0.407 3.593 13 O -0.470 6.470 14 N -0.360 5.360 15 C -0.007 4.007 16 C -0.174 4.174 17 C -0.137 4.137 18 C -0.016 4.016 19 H 0.049 0.951 20 C -0.554 4.554 21 H 0.095 0.905 22 C -0.130 4.130 23 N -0.536 5.536 24 Si 0.711 3.289 25 H -0.201 1.201 26 H -0.225 1.225 27 H -0.185 1.185 28 C -0.001 4.001 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.230 0.770 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.330 10.494 -5.317 26.129 hybrid contribution -1.356 1.210 -0.515 1.889 sum -24.686 11.704 -5.832 27.936 Atomic orbital electron populations 1.23429 0.95391 1.06389 1.04603 1.87502 1.05716 1.09938 1.97779 1.23579 0.99406 0.94486 1.01721 0.89268 1.21842 1.00958 0.96060 0.96183 1.21589 0.96598 0.95367 1.02081 1.21526 0.95307 1.00911 0.97944 1.21964 1.02508 0.94244 0.97846 1.20445 0.89887 0.93514 0.88316 0.88557 1.45292 1.11487 1.66901 1.16571 1.15886 0.81739 0.78101 0.83612 1.90898 1.56367 1.62559 1.37151 1.47638 1.11396 1.67476 1.09504 1.21627 0.92294 0.97845 0.88922 1.22053 0.99212 0.95746 1.00354 1.21421 0.92207 1.01014 0.99027 1.19495 0.96707 0.91536 0.93847 0.95132 1.20966 0.90047 1.46743 0.97621 0.90535 1.25042 0.94831 0.94286 0.98826 1.69902 1.01504 1.48622 1.33525 0.86958 0.78896 0.78782 0.84243 1.20074 1.22537 1.18521 1.22464 0.77221 0.98724 1.01696 0.90716 0.88175 0.90637 0.90243 0.91540 0.91878 0.91404 0.91444 0.91375 0.91781 0.90491 0.76950 0.91741 0.91687 0.91913 0.91860 0.92323 0.92600 0.92593 0.90294 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 10.45 101.05 1.06 0.14 16 2 S -0.24 -2.63 21.37 -107.50 -2.30 -4.92 16 3 C -0.06 -0.58 2.21 -26.73 -0.06 -0.64 16 4 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 5 C -0.11 -0.84 5.11 -26.73 -0.14 -0.98 16 6 C -0.12 -0.80 5.92 -26.73 -0.16 -0.95 16 7 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 8 C -0.13 -1.36 5.49 -26.73 -0.15 -1.50 16 9 C 0.19 2.30 1.94 -67.93 -0.13 2.17 16 10 H 0.10 1.50 7.51 -51.93 -0.39 1.11 16 11 N -0.74 -10.60 4.52 -58.67 -0.27 -10.87 16 12 C 0.70 13.74 8.26 -86.92 -0.72 13.02 16 13 O -0.59 -14.16 15.39 5.28 0.08 -14.08 16 14 N -0.62 -12.01 2.97 -178.23 -0.53 -12.54 16 15 C 0.12 1.69 6.42 -3.48 -0.02 1.67 16 16 C -0.14 -2.06 6.10 -26.38 -0.16 -2.22 16 17 C -0.10 -1.91 5.10 -26.69 -0.14 -2.04 16 18 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 19 H 0.03 0.79 7.21 -51.93 -0.37 0.42 16 20 C -0.52 -14.63 9.15 -34.44 -0.31 -14.94 16 21 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 22 C 0.07 2.16 5.45 -17.82 -0.10 2.07 16 23 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 24 Si 0.88 24.17 24.32 -169.99 -4.13 20.04 16 25 H -0.27 -7.59 6.92 56.52 0.39 -7.20 16 26 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 27 H -0.26 -7.27 6.53 56.52 0.37 -6.90 16 28 C 0.12 2.79 5.11 -3.71 -0.02 2.77 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.07 0.45 7.14 -51.92 -0.37 0.08 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.42 6.92 -51.93 -0.36 0.06 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.39 4.66 6.09 -40.82 -0.25 4.41 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 48 H 0.08 2.07 2.31 -51.93 -0.12 1.96 16 49 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -34.47 376.95 -10.58 -45.05 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.52 Total: 1.61 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -1.37 Total: -2.70 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.02 Total: -50.68 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.08 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.13 Total: 20.04 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.30 Total: -4.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.47 -10.58 -45.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595651048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.338 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds