Wall clock time and date at job start Tue Mar 31 2020 14:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81392 * 103.00136 * 2 1 4 4 H 1.09004 * 109.47173 * 54.99880 * 3 2 1 5 5 C 1.53006 * 109.47109 * 294.99999 * 3 2 1 6 6 C 1.53000 * 109.46925 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47255 * 59.99845 * 6 5 3 8 8 C 1.52994 * 109.47330 * 299.99682 * 7 6 5 9 9 C 1.53001 * 109.46996 * 60.00201 * 8 7 6 10 10 H 1.09003 * 109.47753 * 59.99904 * 9 8 7 11 11 N 1.46501 * 109.47438 * 179.97438 * 9 8 7 12 12 C 1.34771 * 120.00040 * 275.00004 * 11 9 8 13 13 O 1.21592 * 119.99887 * 355.00744 * 12 11 9 14 14 N 1.34778 * 120.00192 * 175.00359 * 12 11 9 15 15 C 1.46931 * 120.62809 * 4.94370 * 14 12 11 16 16 C 1.53625 * 108.54238 * 126.36552 * 15 14 12 17 17 C 1.53046 * 109.23975 * 54.85431 * 16 15 14 18 18 C 1.53034 * 109.53842 * 298.50741 * 17 16 15 19 19 H 1.08994 * 109.50056 * 301.41572 * 18 17 16 20 20 C 1.50703 * 109.49551 * 181.31547 * 18 17 16 21 21 H 1.08000 * 120.00110 * 0.16876 * 20 18 17 22 22 C 1.37880 * 119.99893 * 180.16393 * 20 18 17 23 23 N 1.31514 * 119.99853 * 180.02562 * 22 20 18 24 24 Si 1.86801 * 120.00067 * 0.02562 * 22 20 18 25 25 H 1.48498 * 109.47324 * 90.00148 * 24 22 20 26 26 H 1.48503 * 109.47092 * 210.00188 * 24 22 20 27 27 H 1.48500 * 109.47018 * 329.99840 * 24 22 20 28 28 C 1.46927 * 120.63031 * 185.21675 * 14 12 11 29 29 H 1.08997 * 109.47065 * 300.00408 * 1 2 3 30 30 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46643 * 60.00093 * 1 2 3 32 32 H 1.08994 * 109.46969 * 299.99917 * 5 3 2 33 33 H 1.09000 * 109.46710 * 60.00158 * 5 3 2 34 34 H 1.09004 * 109.47195 * 299.99781 * 6 5 3 35 35 H 1.09001 * 109.46682 * 179.97438 * 6 5 3 36 36 H 1.08999 * 109.46885 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46634 * 60.00162 * 7 6 5 38 38 H 1.08994 * 109.47152 * 300.00172 * 8 7 6 39 39 H 1.08995 * 109.47113 * 179.97438 * 8 7 6 40 40 H 0.97000 * 120.00002 * 94.99436 * 11 9 8 41 41 H 1.08999 * 109.58100 * 246.19841 * 15 14 12 42 42 H 1.09000 * 109.58332 * 6.62542 * 15 14 12 43 43 H 1.09003 * 109.63525 * 294.86561 * 16 15 14 44 44 H 1.08999 * 109.43026 * 174.72277 * 16 15 14 45 45 H 1.08998 * 109.45680 * 178.48679 * 17 16 15 46 46 H 1.08999 * 109.44600 * 58.52360 * 17 16 15 47 47 H 0.97006 * 119.99542 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.58981 * 353.37942 * 28 14 12 49 49 H 1.09004 * 109.57909 * 113.66177 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 2.0877 3.8922 -1.3076 7 6 3.6027 4.0652 -1.1822 8 6 4.0819 3.4313 0.1252 9 6 3.7372 1.9406 0.1254 10 1 4.2294 1.4536 -0.7164 11 7 4.1966 1.3333 1.3770 12 6 5.4699 0.9067 1.4914 13 8 6.2117 0.9421 0.5287 14 7 5.9210 0.4409 2.6729 15 6 5.0095 0.2906 3.8155 16 6 5.1155 -1.1499 4.3388 17 6 6.5791 -1.4645 4.6570 18 6 7.4157 -1.3534 3.3804 19 1 7.0296 -2.0444 2.6311 20 6 8.8509 -1.6948 3.6884 21 1 9.1376 -1.9668 4.6935 22 6 9.7979 -1.6600 2.6869 23 7 11.0503 -1.9584 2.9555 24 14 9.3022 -1.1890 0.9485 25 1 9.4290 0.2807 0.7786 26 1 10.1892 -1.8780 -0.0230 27 1 7.8943 -1.5956 0.7080 28 6 7.3347 0.0794 2.8446 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 -0.8900 32 1 2.2355 1.9149 -2.1491 33 1 0.6636 2.2778 -1.3969 34 1 1.5954 4.3791 -0.4658 35 1 1.7466 4.3438 -2.2392 36 1 3.8483 5.1272 -1.1828 37 1 4.0949 3.5783 -2.0241 38 1 3.5896 3.9182 0.9669 39 1 5.1612 3.5542 0.2143 40 1 3.5844 1.2383 2.1233 41 1 5.2919 0.9899 4.6025 42 1 3.9868 0.4904 3.4958 43 1 4.7510 -1.8428 3.5804 44 1 4.5164 -1.2520 5.2436 45 1 6.6549 -2.4768 5.0540 46 1 6.9500 -0.7555 5.3972 47 1 11.7165 -1.9343 2.2508 48 1 7.8466 0.1399 1.8842 49 1 7.8033 0.7635 3.5522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595651048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:08 Heat of formation + Delta-G solvation = -63.042637 kcal Electronic energy + Delta-G solvation = -27246.636838 eV Core-core repulsion = 23719.231335 eV Total energy + Delta-G solvation = -3527.405503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61781 -39.70137 -38.33735 -35.65737 -34.96152 -33.55117 -32.19171 -32.05899 -30.23798 -29.59091 -27.01901 -26.23417 -23.89064 -23.56768 -23.40104 -21.59280 -21.18147 -20.32950 -19.24122 -18.89099 -17.76984 -17.36403 -16.78107 -16.40752 -15.94993 -15.59137 -15.54522 -15.32929 -15.30762 -15.02511 -14.92206 -14.54734 -14.34906 -14.27683 -14.12334 -13.87730 -13.73221 -13.62967 -13.17009 -12.92995 -12.87254 -12.61348 -12.33539 -12.27685 -12.15272 -11.96411 -11.80967 -11.61233 -11.57619 -11.36693 -11.29373 -11.05859 -10.97569 -10.80342 -10.70430 -10.18837 -9.42164 -8.70556 -8.40530 -6.41208 0.68246 1.21137 1.27120 1.44144 1.62028 1.68097 2.12009 2.20206 2.89511 2.98553 3.40385 3.72854 3.91804 3.96845 4.03259 4.07170 4.12781 4.16391 4.23349 4.35192 4.37095 4.39019 4.39435 4.44234 4.52516 4.62369 4.69994 4.73585 4.82553 4.87239 4.90442 4.95520 4.99383 5.07844 5.10506 5.13479 5.19209 5.20829 5.27948 5.41577 5.42676 5.52297 5.54126 5.62785 5.70004 5.99528 6.26357 6.67430 7.00418 7.24583 7.55452 8.75477 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.003874 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.347372 B = 7226.236207 C = 7969.994429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.320 6.320 3 C -0.040 4.040 4 H 0.115 0.885 5 C -0.108 4.108 6 C -0.109 4.109 7 C -0.118 4.118 8 C -0.119 4.119 9 C 0.183 3.817 10 H 0.055 0.945 11 N -0.722 5.722 12 C 0.698 3.302 13 O -0.645 6.645 14 N -0.628 5.628 15 C 0.112 3.888 16 C -0.126 4.126 17 C -0.096 4.096 18 C 0.004 3.996 19 H 0.007 0.993 20 C -0.509 4.509 21 H 0.054 0.946 22 C 0.033 3.967 23 N -0.936 5.936 24 Si 0.938 3.062 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.275 1.275 28 C 0.128 3.872 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.409 0.591 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.051 0.949 44 H 0.109 0.891 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.267 0.733 48 H 0.045 0.955 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.353 13.305 -3.664 32.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.092 6.092 3 C -0.169 4.169 4 H 0.133 0.867 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.160 4.160 9 C 0.076 3.924 10 H 0.073 0.927 11 N -0.379 5.379 12 C 0.400 3.600 13 O -0.527 6.527 14 N -0.364 5.364 15 C -0.010 4.010 16 C -0.164 4.164 17 C -0.134 4.134 18 C -0.016 4.016 19 H 0.026 0.974 20 C -0.548 4.548 21 H 0.073 0.927 22 C -0.166 4.166 23 N -0.576 5.576 24 Si 0.769 3.231 25 H -0.211 1.211 26 H -0.222 1.222 27 H -0.200 1.200 28 C 0.005 3.995 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.248 0.752 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.127 0.873 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -28.009 12.385 -4.377 30.936 hybrid contribution 0.024 0.598 -0.765 0.971 sum -27.985 12.982 -5.142 31.275 Atomic orbital electron populations 1.23439 0.90888 1.07160 1.06171 1.87827 1.10776 1.12534 1.98014 1.23477 0.96607 0.93092 1.03725 0.86677 1.21853 1.02081 0.96364 0.94459 1.21562 0.94710 0.94750 1.03780 1.21532 0.96972 1.01189 0.95875 1.21898 1.00535 0.93369 1.00152 1.20559 0.91998 0.93879 0.85950 0.92668 1.45094 1.09590 1.65530 1.17735 1.16118 0.82901 0.78073 0.82913 1.90859 1.58203 1.64593 1.39065 1.47552 1.10480 1.67381 1.10980 1.22009 0.93134 0.97977 0.87875 1.22001 0.96466 0.95821 1.02112 1.21358 0.94399 1.01269 0.96347 1.19428 0.94786 0.91530 0.95878 0.97435 1.21331 0.92307 1.44848 0.96279 0.92740 1.25546 0.94944 0.94943 1.01167 1.69977 1.02356 1.50816 1.34457 0.86077 0.77522 0.77743 0.81785 1.21061 1.22193 1.20043 1.21949 0.79841 0.98069 0.99687 0.88932 0.87841 0.89173 0.92014 0.89193 0.89948 0.89812 0.90118 0.93121 0.89465 0.94106 0.75152 0.89409 0.88048 0.92987 0.87316 0.92635 0.91856 0.92351 0.93681 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.45 113.37 1.19 0.04 16 2 S -0.32 -6.51 21.37 -56.49 -1.21 -7.71 16 3 C -0.04 -0.64 2.21 30.60 0.07 -0.57 16 4 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.11 -1.33 5.11 30.60 0.16 -1.18 16 6 C -0.11 -1.09 5.92 30.59 0.18 -0.91 16 7 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 8 C -0.12 -2.46 5.49 30.59 0.17 -2.29 16 9 C 0.18 4.41 1.94 44.99 0.09 4.50 16 10 H 0.06 1.82 7.51 -2.39 -0.02 1.80 16 11 N -0.72 -19.68 4.52 -457.80 -2.07 -21.75 16 12 C 0.70 27.39 8.26 179.06 1.48 28.87 16 13 O -0.64 -32.31 15.39 -4.01 -0.06 -32.37 16 14 N -0.63 -23.71 2.97 -836.05 -2.48 -26.19 16 15 C 0.11 2.85 6.42 86.51 0.56 3.40 16 16 C -0.13 -3.42 6.10 30.82 0.19 -3.23 16 17 C -0.10 -3.56 5.10 30.62 0.16 -3.41 16 18 C 0.00 0.17 1.84 -11.46 -0.02 0.15 16 19 H 0.01 0.40 7.21 -2.39 -0.02 0.38 16 20 C -0.51 -29.68 9.15 25.60 0.23 -29.44 16 21 H 0.05 3.37 7.99 -2.91 -0.02 3.34 16 22 C 0.03 2.01 5.45 84.66 0.46 2.47 16 23 N -0.94 -60.19 13.96 21.45 0.30 -59.89 16 24 Si 0.94 52.92 24.32 68.60 1.67 54.58 16 25 H -0.28 -16.24 6.92 99.48 0.69 -15.55 16 26 H -0.29 -16.17 7.11 99.48 0.71 -15.47 16 27 H -0.27 -15.95 6.53 99.48 0.65 -15.30 16 28 C 0.13 6.01 5.11 86.36 0.44 6.45 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 0.70 7.14 -2.39 -0.02 0.69 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 0.75 6.92 -2.39 -0.02 0.73 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.41 8.41 6.09 -92.71 -0.56 7.85 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 42 H 0.10 1.86 5.64 -2.39 -0.01 1.84 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.27 16.24 8.31 -92.70 -0.77 15.47 16 48 H 0.05 2.45 2.31 -2.39 -0.01 2.44 16 49 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 Total: -1.00 -81.54 376.95 1.96 -79.58 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.29 Total: 10.54 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 5.52 Total: 3.21 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -4.25 Total: -107.83 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.06 Total: -32.37 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 1.67 Total: 54.58 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -1.21 Total: -7.71 kcal Total: -81.54 1.96 -79.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595651048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.537 kcal (2) G-P(sol) polarization free energy of solvation -81.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds