Wall clock time and date at job start Tue Mar 31 2020 14:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81392 * 102.99899 * 2 1 4 4 C 1.53004 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.52992 * 115.55045 * 297.84338 * 4 3 2 6 6 C 1.52998 * 109.47264 * 295.61427 * 5 4 3 7 7 N 1.46504 * 109.47485 * 185.12707 * 6 5 4 8 8 C 1.34771 * 119.99913 * 180.02562 * 7 6 5 9 9 O 1.21587 * 120.00665 * 5.29048 * 8 7 6 10 10 N 1.34777 * 119.99840 * 185.29452 * 8 7 6 11 11 C 1.46924 * 120.63368 * 175.07331 * 10 8 7 12 12 C 1.53197 * 108.89506 * 126.45564 * 11 10 8 13 13 C 1.53041 * 109.31087 * 54.56589 * 12 11 10 14 14 C 1.50696 * 109.45891 * 178.62534 * 13 12 11 15 15 H 1.08007 * 119.99923 * 5.19315 * 14 13 12 16 16 C 1.37879 * 119.99921 * 185.18673 * 14 13 12 17 17 N 1.31511 * 119.99913 * 8.79605 * 16 14 13 18 18 Si 1.86801 * 119.99868 * 188.79270 * 16 14 13 19 19 H 1.48503 * 109.47040 * 94.99244 * 18 16 14 20 20 H 1.48505 * 109.47156 * 214.99445 * 18 16 14 21 21 H 1.48504 * 109.47434 * 334.99134 * 18 16 14 22 22 C 1.53040 * 109.53628 * 298.63407 * 13 12 11 23 23 C 1.46963 * 120.65428 * 354.88274 * 10 8 7 24 24 C 1.53006 * 117.49795 * 83.51431 * 4 3 2 25 25 C 1.52999 * 117.49976 * 152.16967 * 4 3 2 26 26 H 1.08997 * 109.47478 * 300.00487 * 1 2 3 27 27 H 1.08999 * 109.46827 * 60.00578 * 1 2 3 28 28 H 1.09002 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47500 * 59.99622 * 3 2 1 30 30 H 1.09007 * 109.46942 * 299.99469 * 3 2 1 31 31 H 1.08999 * 109.47383 * 175.60997 * 5 4 3 32 32 H 1.09000 * 109.47144 * 55.61501 * 5 4 3 33 33 H 1.08998 * 109.47131 * 65.12776 * 6 5 4 34 34 H 1.09004 * 109.47226 * 305.13103 * 6 5 4 35 35 H 0.97002 * 119.99602 * 0.02562 * 7 6 5 36 36 H 1.09004 * 109.58411 * 6.59795 * 11 10 8 37 37 H 1.08995 * 109.59067 * 246.31642 * 11 10 8 38 38 H 1.08997 * 109.49210 * 174.51666 * 12 11 10 39 39 H 1.08995 * 109.49488 * 294.57722 * 12 11 10 40 40 H 1.08998 * 109.45851 * 58.65429 * 13 12 11 41 41 H 0.96996 * 119.99765 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.49443 * 181.31678 * 22 13 12 43 43 H 1.08996 * 109.49956 * 301.41316 * 22 13 12 44 44 H 1.09002 * 109.46584 * 113.75221 * 23 10 8 45 45 H 1.09000 * 109.71163 * 353.47017 * 23 10 8 46 46 H 1.09002 * 117.49406 * 215.00356 * 24 4 3 47 47 H 1.09003 * 117.49736 * 0.02562 * 24 4 3 48 48 H 1.08999 * 117.50033 * 359.97438 * 25 4 3 49 49 H 1.09007 * 117.49753 * 144.97193 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.4701 1.3738 1.2215 6 6 4.0378 2.1398 2.4735 7 7 4.8233 1.6814 3.6220 8 6 4.6132 2.2191 4.8398 9 8 3.7082 3.0139 5.0057 10 7 5.4064 1.8757 5.8740 11 6 5.2595 2.5322 7.1802 12 6 5.0787 1.4582 8.2576 13 6 6.2396 0.4639 8.1810 14 6 6.0829 -0.5750 9.2614 15 1 5.1981 -0.5807 9.8808 16 6 7.0689 -1.5183 9.4588 17 7 8.2177 -1.4107 8.8279 18 14 6.7729 -2.9491 10.6227 19 1 6.2964 -4.1248 9.8507 20 1 8.0400 -3.2930 11.3167 21 1 5.7470 -2.5670 11.6262 22 6 6.2380 -0.2202 6.8120 23 6 6.4320 0.8348 5.7183 24 6 4.4621 1.8671 -1.3475 25 6 4.3093 3.2120 -0.6328 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8031 2.2371 0.8899 30 1 1.8031 2.2370 -0.8901 31 1 5.5462 1.4795 1.0844 32 1 4.2204 0.3191 1.3366 33 1 2.9795 1.9599 2.6621 34 1 4.2038 3.2064 2.3222 35 1 5.4946 0.9908 3.5059 36 1 4.3868 3.1851 7.1650 37 1 6.1517 3.1198 7.3963 38 1 5.0663 1.9280 9.2411 39 1 4.1378 0.9331 8.0935 40 1 7.1816 0.9941 8.3210 41 1 8.9115 -2.0741 8.9671 42 1 7.0509 -0.9450 6.7667 43 1 5.2865 -0.7300 6.6611 44 1 7.4213 1.2824 5.8136 45 1 6.3355 0.3672 4.7385 46 1 5.4542 1.4158 -1.3646 47 1 3.8525 1.6967 -2.2350 48 1 3.5993 3.9258 -1.0504 49 1 5.2006 3.6458 -0.1794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595738162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:42 Heat of formation + Delta-G solvation = -18.470516 kcal Electronic energy + Delta-G solvation = -25785.847019 eV Core-core repulsion = 22260.374309 eV Total energy + Delta-G solvation = -3525.472710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96152 -38.81469 -36.90725 -34.73606 -33.43981 -31.43409 -30.29714 -29.86976 -29.45192 -28.38279 -26.09434 -23.87832 -22.89718 -22.56840 -22.08120 -20.26591 -19.58534 -18.68780 -17.59541 -16.48569 -16.22993 -16.14187 -15.79062 -15.38196 -14.95027 -14.61259 -14.40323 -14.22617 -13.92033 -13.79313 -13.62475 -13.24397 -13.10322 -12.84165 -12.70032 -12.65305 -12.31925 -12.16504 -11.84810 -11.68417 -11.54038 -11.43276 -11.34487 -10.92055 -10.63434 -10.60687 -10.50031 -10.36798 -10.20562 -9.82710 -9.73869 -9.55288 -9.05640 -8.98299 -8.86668 -8.34649 -7.91399 -7.87355 -6.04677 -4.06150 1.34406 2.30569 3.02887 3.29246 3.36881 3.40399 3.47196 3.60365 4.15436 4.27756 4.33300 4.42941 4.56280 4.61208 4.81809 4.85344 4.97756 5.05392 5.24624 5.26365 5.30090 5.34128 5.39700 5.42529 5.55226 5.58401 5.73197 5.79743 5.80559 5.94625 5.98161 6.01325 6.08970 6.20824 6.25013 6.49737 6.67244 6.72306 6.88991 7.01887 7.12873 7.18181 7.47114 7.66531 7.91450 7.97437 8.34745 8.41806 8.97508 8.98679 9.57688 11.03916 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.002473 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.192419 B =11319.004418 C =11881.952470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.250 6.250 3 C -0.050 4.050 4 C -0.108 4.108 5 C -0.095 4.095 6 C 0.146 3.854 7 N -0.751 5.751 8 C 0.706 3.294 9 O -0.606 6.606 10 N -0.619 5.619 11 C 0.129 3.871 12 C -0.124 4.124 13 C 0.048 3.952 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.117 4.117 23 C 0.111 3.889 24 C -0.162 4.162 25 C -0.163 4.163 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.396 0.604 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.034 0.966 41 H 0.260 0.740 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 6.221 -21.497 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.024 6.024 3 C -0.198 4.198 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.021 3.979 7 N -0.410 5.410 8 C 0.408 3.592 9 O -0.486 6.486 10 N -0.355 5.355 11 C 0.007 3.993 12 C -0.162 4.162 13 C 0.029 3.971 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.156 4.156 23 C -0.012 4.012 24 C -0.199 4.199 25 C -0.202 4.202 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.233 0.767 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.079 5.842 -21.376 23.587 hybrid contribution -0.630 -0.305 0.536 0.882 sum -8.708 5.537 -20.840 23.255 Atomic orbital electron populations 1.23408 0.94740 1.06554 1.04814 1.86996 1.06631 1.10791 1.97976 1.22947 0.96906 0.94871 1.05080 1.20884 0.91853 1.03197 0.95031 1.21332 0.99610 1.00716 0.91616 1.21011 0.95577 0.98017 0.83286 1.45257 1.43729 1.44744 1.07266 1.15825 0.81947 0.81038 0.80408 1.90844 1.33834 1.40134 1.83755 1.47388 1.36717 1.40824 1.10570 1.21567 1.01255 0.95312 0.81204 1.22017 1.00926 0.96929 0.96324 1.18628 0.93289 0.92966 0.92171 1.21190 1.04282 1.13006 1.16649 0.92703 1.24953 0.94826 0.98054 0.95976 1.69943 1.04247 1.35095 1.43555 0.86668 0.77634 0.83136 0.81109 1.20755 1.21334 1.19921 1.21937 1.01466 0.97068 0.95144 1.21848 0.90528 0.89502 0.99287 1.23086 1.01928 1.00228 0.94705 1.23139 1.03108 0.90704 1.03294 0.90404 0.90724 0.88072 0.89305 0.90076 0.90856 0.89832 0.91890 0.92094 0.76747 0.90320 0.92466 0.92067 0.93045 0.94794 0.93052 0.89632 0.93999 0.91948 0.92488 0.88328 0.88451 0.88598 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 10.76 101.05 1.09 0.20 16 2 S -0.25 -2.36 21.49 -107.50 -2.31 -4.67 16 3 C -0.05 -0.40 5.59 37.16 0.21 -0.20 16 4 C -0.11 -0.86 1.55 -154.51 -0.24 -1.10 16 5 C -0.09 -0.88 5.04 -26.74 -0.13 -1.01 16 6 C 0.15 1.75 5.39 -4.04 -0.02 1.73 16 7 N -0.75 -10.73 5.47 -65.22 -0.36 -11.09 16 8 C 0.71 12.96 8.30 -86.92 -0.72 12.24 16 9 O -0.61 -12.94 15.77 5.29 0.08 -12.86 16 10 N -0.62 -11.39 2.98 -178.47 -0.53 -11.93 16 11 C 0.13 2.44 6.44 -3.71 -0.02 2.41 16 12 C -0.12 -2.58 5.30 -26.61 -0.14 -2.72 16 13 C 0.05 1.14 1.93 -91.73 -0.18 0.97 16 14 C -0.51 -13.75 8.48 -34.44 -0.29 -14.04 16 15 H 0.05 1.48 7.76 -52.48 -0.41 1.07 16 16 C 0.06 1.71 5.20 -17.82 -0.09 1.62 16 17 N -0.89 -24.62 12.10 55.43 0.67 -23.95 16 18 Si 0.89 20.96 29.55 -169.99 -5.02 15.94 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.12 -2.55 5.21 -26.61 -0.14 -2.69 16 23 C 0.11 1.96 6.38 -3.69 -0.02 1.94 16 24 C -0.16 -1.12 9.94 -26.69 -0.27 -1.39 16 25 C -0.16 -1.12 9.96 -26.70 -0.27 -1.38 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 29 H 0.09 0.76 7.19 -51.93 -0.37 0.39 16 30 H 0.08 0.55 8.11 -51.92 -0.42 0.13 16 31 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.08 0.85 7.41 -51.93 -0.38 0.47 16 33 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.40 4.97 5.97 -40.82 -0.24 4.72 16 36 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.03 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.09 2.04 6.82 -51.93 -0.35 1.69 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.84 5.65 -51.93 -0.29 0.55 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -30.60 397.69 -11.41 -42.01 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.69 Total: 3.98 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.24 Total: -3.43 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.22 Total: -46.97 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -2.31 Total: -4.67 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.60 -11.41 -42.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595738162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.539 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds