Wall clock time and date at job start Tue Mar 31 2020 14:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81392 * 102.99899 * 2 1 4 4 C 1.53004 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.52992 * 115.55045 * 297.84338 * 4 3 2 6 6 C 1.52998 * 109.47264 * 295.61427 * 5 4 3 7 7 N 1.46504 * 109.47485 * 185.12707 * 6 5 4 8 8 C 1.34771 * 119.99913 * 180.02562 * 7 6 5 9 9 O 1.21587 * 120.00665 * 5.29048 * 8 7 6 10 10 N 1.34777 * 119.99840 * 185.29452 * 8 7 6 11 11 C 1.46924 * 120.63368 * 175.07331 * 10 8 7 12 12 C 1.53197 * 108.89506 * 126.45564 * 11 10 8 13 13 C 1.53041 * 109.31087 * 54.56589 * 12 11 10 14 14 C 1.50696 * 109.45891 * 178.62534 * 13 12 11 15 15 H 1.08007 * 119.99923 * 5.19315 * 14 13 12 16 16 C 1.37879 * 119.99921 * 185.18673 * 14 13 12 17 17 N 1.31511 * 119.99913 * 8.79605 * 16 14 13 18 18 Si 1.86801 * 119.99868 * 188.79270 * 16 14 13 19 19 H 1.48503 * 109.47040 * 94.99244 * 18 16 14 20 20 H 1.48505 * 109.47156 * 214.99445 * 18 16 14 21 21 H 1.48504 * 109.47434 * 334.99134 * 18 16 14 22 22 C 1.53040 * 109.53628 * 298.63407 * 13 12 11 23 23 C 1.46963 * 120.65428 * 354.88274 * 10 8 7 24 24 C 1.53006 * 117.49795 * 83.51431 * 4 3 2 25 25 C 1.52999 * 117.49976 * 152.16967 * 4 3 2 26 26 H 1.08997 * 109.47478 * 300.00487 * 1 2 3 27 27 H 1.08999 * 109.46827 * 60.00578 * 1 2 3 28 28 H 1.09002 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47500 * 59.99622 * 3 2 1 30 30 H 1.09007 * 109.46942 * 299.99469 * 3 2 1 31 31 H 1.08999 * 109.47383 * 175.60997 * 5 4 3 32 32 H 1.09000 * 109.47144 * 55.61501 * 5 4 3 33 33 H 1.08998 * 109.47131 * 65.12776 * 6 5 4 34 34 H 1.09004 * 109.47226 * 305.13103 * 6 5 4 35 35 H 0.97002 * 119.99602 * 0.02562 * 7 6 5 36 36 H 1.09004 * 109.58411 * 6.59795 * 11 10 8 37 37 H 1.08995 * 109.59067 * 246.31642 * 11 10 8 38 38 H 1.08997 * 109.49210 * 174.51666 * 12 11 10 39 39 H 1.08995 * 109.49488 * 294.57722 * 12 11 10 40 40 H 1.08998 * 109.45851 * 58.65429 * 13 12 11 41 41 H 0.96996 * 119.99765 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.49443 * 181.31678 * 22 13 12 43 43 H 1.08996 * 109.49956 * 301.41316 * 22 13 12 44 44 H 1.09002 * 109.46584 * 113.75221 * 23 10 8 45 45 H 1.09000 * 109.71163 * 353.47017 * 23 10 8 46 46 H 1.09002 * 117.49406 * 215.00356 * 24 4 3 47 47 H 1.09003 * 117.49736 * 0.02562 * 24 4 3 48 48 H 1.08999 * 117.50033 * 359.97438 * 25 4 3 49 49 H 1.09007 * 117.49753 * 144.97193 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.4701 1.3738 1.2215 6 6 4.0378 2.1398 2.4735 7 7 4.8233 1.6814 3.6220 8 6 4.6132 2.2191 4.8398 9 8 3.7082 3.0139 5.0057 10 7 5.4064 1.8757 5.8740 11 6 5.2595 2.5322 7.1802 12 6 5.0787 1.4582 8.2576 13 6 6.2396 0.4639 8.1810 14 6 6.0829 -0.5750 9.2614 15 1 5.1981 -0.5807 9.8808 16 6 7.0689 -1.5183 9.4588 17 7 8.2177 -1.4107 8.8279 18 14 6.7729 -2.9491 10.6227 19 1 6.2964 -4.1248 9.8507 20 1 8.0400 -3.2930 11.3167 21 1 5.7470 -2.5670 11.6262 22 6 6.2380 -0.2202 6.8120 23 6 6.4320 0.8348 5.7183 24 6 4.4621 1.8671 -1.3475 25 6 4.3093 3.2120 -0.6328 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8031 2.2371 0.8899 30 1 1.8031 2.2370 -0.8901 31 1 5.5462 1.4795 1.0844 32 1 4.2204 0.3191 1.3366 33 1 2.9795 1.9599 2.6621 34 1 4.2038 3.2064 2.3222 35 1 5.4946 0.9908 3.5059 36 1 4.3868 3.1851 7.1650 37 1 6.1517 3.1198 7.3963 38 1 5.0663 1.9280 9.2411 39 1 4.1378 0.9331 8.0935 40 1 7.1816 0.9941 8.3210 41 1 8.9115 -2.0741 8.9671 42 1 7.0509 -0.9450 6.7667 43 1 5.2865 -0.7300 6.6611 44 1 7.4213 1.2824 5.8136 45 1 6.3355 0.3672 4.7385 46 1 5.4542 1.4158 -1.3646 47 1 3.8525 1.6967 -2.2350 48 1 3.5993 3.9258 -1.0504 49 1 5.2006 3.6458 -0.1794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595738162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:41 Heat of formation + Delta-G solvation = -34.102859 kcal Electronic energy + Delta-G solvation = -25786.524889 eV Core-core repulsion = 22260.374309 eV Total energy + Delta-G solvation = -3526.150580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37726 -39.53124 -38.48116 -35.96361 -35.27827 -33.11334 -31.82692 -30.95476 -30.10690 -29.06945 -27.88307 -25.15306 -24.31442 -23.74255 -23.11805 -21.75651 -20.70775 -19.86968 -19.04651 -18.25890 -17.39321 -17.17045 -16.79691 -16.51931 -16.24659 -15.93460 -15.56104 -15.15662 -14.97001 -14.88738 -14.72794 -14.55285 -14.43268 -14.28269 -13.93806 -13.83642 -13.33200 -13.27443 -13.14482 -13.00182 -12.78812 -12.51819 -12.43510 -12.30532 -12.23613 -12.17415 -12.00122 -11.48662 -11.31101 -11.21912 -11.06731 -10.89203 -10.80534 -10.44614 -10.40037 -10.18115 -9.37523 -8.62657 -8.11169 -6.18935 0.72883 1.40655 1.43459 1.52176 1.68826 1.72799 2.15091 2.44808 2.85594 2.97002 3.18493 3.62574 3.70583 3.89615 3.96948 4.11400 4.18593 4.26605 4.31318 4.32168 4.34725 4.36386 4.45180 4.54799 4.55666 4.59441 4.68276 4.68629 4.84081 4.87180 4.89378 4.96637 4.99405 5.08397 5.15270 5.19796 5.21729 5.24679 5.29929 5.37776 5.50216 5.54869 5.67531 5.98730 6.03176 6.07788 6.39704 6.90655 6.98569 7.47422 7.56919 8.96181 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.002473 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.192419 B =11319.004418 C =11881.952470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.301 6.301 3 C -0.038 4.038 4 C -0.122 4.122 5 C -0.083 4.083 6 C 0.149 3.851 7 N -0.738 5.738 8 C 0.703 3.297 9 O -0.637 6.637 10 N -0.622 5.622 11 C 0.135 3.865 12 C -0.114 4.114 13 C 0.046 3.954 14 C -0.535 4.535 15 H 0.045 0.955 16 C 0.021 3.979 17 N -0.912 5.912 18 Si 0.944 3.056 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.273 1.273 22 C -0.108 4.108 23 C 0.122 3.878 24 C -0.155 4.155 25 C -0.156 4.156 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.406 0.594 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.009 0.991 41 H 0.262 0.738 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.106 0.894 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 6.401 -23.108 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.075 6.075 3 C -0.186 4.186 4 C -0.124 4.124 5 C -0.121 4.121 6 C 0.025 3.975 7 N -0.396 5.396 8 C 0.404 3.596 9 O -0.520 6.520 10 N -0.358 5.358 11 C 0.012 3.988 12 C -0.152 4.152 13 C 0.027 3.973 14 C -0.573 4.573 15 H 0.064 0.936 16 C -0.178 4.178 17 N -0.551 5.551 18 Si 0.770 3.230 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.147 4.147 23 C -0.001 4.001 24 C -0.192 4.192 25 C -0.195 4.195 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.181 6.007 -23.016 25.154 hybrid contribution -0.625 -0.353 1.043 1.266 sum -8.805 5.654 -21.973 24.338 Atomic orbital electron populations 1.23429 0.92384 1.07191 1.05528 1.87124 1.09430 1.12861 1.98083 1.22907 0.97082 0.93336 1.05294 1.20866 0.91760 1.04607 0.95132 1.21218 1.00435 0.99719 0.90758 1.21095 0.94517 0.98388 0.83482 1.45225 1.43675 1.44174 1.06509 1.15987 0.81439 0.80933 0.81225 1.90821 1.35109 1.41670 1.84396 1.47384 1.36926 1.40909 1.10579 1.21450 1.01876 0.94552 0.80885 1.21867 0.99005 0.96811 0.97525 1.18590 0.93088 0.92901 0.92704 1.21517 1.04042 1.14191 1.17559 0.93628 1.25599 0.94656 1.00093 0.97503 1.70030 1.04731 1.35764 1.44565 0.85766 0.77525 0.80338 0.79357 1.20274 1.20886 1.19789 1.21712 0.99892 0.97538 0.95566 1.21736 0.90627 0.88332 0.99391 1.23127 1.01931 1.00083 0.94048 1.23207 1.03142 0.90582 1.02572 0.90452 0.89216 0.87511 0.90200 0.88636 0.89607 0.90731 0.93387 0.92170 0.75583 0.90289 0.91206 0.91771 0.94217 0.97241 0.92930 0.91871 0.95052 0.91306 0.89131 0.87949 0.87897 0.87593 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 10.76 113.37 1.22 -0.28 16 2 S -0.30 -5.44 21.49 -56.49 -1.21 -6.65 16 3 C -0.04 -0.57 5.59 71.98 0.40 -0.17 16 4 C -0.12 -1.73 1.55 -52.18 -0.08 -1.81 16 5 C -0.08 -1.41 5.04 30.59 0.15 -1.25 16 6 C 0.15 3.41 5.39 86.38 0.47 3.87 16 7 N -0.74 -19.87 5.47 -478.53 -2.62 -22.49 16 8 C 0.70 24.95 8.30 179.06 1.49 26.44 16 9 O -0.64 -26.83 15.77 -3.99 -0.06 -26.90 16 10 N -0.62 -22.20 2.98 -836.81 -2.49 -24.70 16 11 C 0.14 5.01 6.44 86.36 0.56 5.57 16 12 C -0.11 -4.77 5.30 30.67 0.16 -4.60 16 13 C 0.05 2.21 1.93 -11.51 -0.02 2.19 16 14 C -0.54 -29.07 8.48 25.60 0.22 -28.85 16 15 H 0.05 2.50 7.76 -2.91 -0.02 2.47 16 16 C 0.02 1.13 5.20 84.66 0.44 1.57 16 17 N -0.91 -50.78 12.10 21.45 0.26 -50.52 16 18 Si 0.94 43.09 29.55 68.60 2.03 45.11 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 22 C -0.11 -4.71 5.21 30.67 0.16 -4.55 16 23 C 0.12 4.13 6.38 86.36 0.55 4.68 16 24 C -0.15 -1.78 9.94 30.62 0.30 -1.48 16 25 C -0.16 -1.76 9.96 30.62 0.30 -1.46 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.31 7.19 -2.39 -0.02 1.30 16 30 H 0.10 1.11 8.11 -2.39 -0.02 1.10 16 31 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 32 H 0.07 1.43 7.41 -2.39 -0.02 1.41 16 33 H 0.05 1.26 7.28 -2.39 -0.02 1.24 16 34 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.41 9.24 5.97 -92.71 -0.55 8.69 16 36 H 0.08 2.95 6.99 -2.38 -0.02 2.93 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.01 0.50 8.10 -2.39 -0.02 0.48 16 41 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 42 H 0.06 3.04 6.82 -2.38 -0.02 3.02 16 43 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.09 2.45 5.65 -2.39 -0.01 2.44 16 46 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 47 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -65.67 397.69 2.59 -63.08 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.37 Total: 23.20 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 6.32 Total: -0.14 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -4.85 Total: -97.71 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.90 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -1.21 Total: -6.65 kcal Total: -65.67 2.59 -63.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595738162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.977 kcal (2) G-P(sol) polarization free energy of solvation -65.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds