Wall clock time and date at job start Tue Mar 31 2020 14:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81391 * 102.99874 * 2 1 4 4 C 1.53006 * 109.46880 * 180.02562 * 3 2 1 5 5 C 1.53005 * 115.54641 * 303.10143 * 4 3 2 6 6 C 1.52998 * 109.46927 * 294.88274 * 5 4 3 7 7 N 1.46505 * 109.46823 * 185.00176 * 6 5 4 8 8 C 1.34771 * 120.00213 * 179.97438 * 7 6 5 9 9 O 1.21595 * 120.00035 * 5.00404 * 8 7 6 10 10 N 1.34773 * 120.00320 * 184.99503 * 8 7 6 11 11 C 1.46933 * 120.63117 * 355.07393 * 10 8 7 12 12 C 1.53190 * 108.89124 * 126.33658 * 11 10 8 13 13 C 1.53345 * 109.15202 * 54.58343 * 12 11 10 14 14 C 1.53048 * 109.60351 * 298.70609 * 13 12 11 15 15 H 1.08996 * 109.49451 * 301.42314 * 14 13 12 16 16 C 1.50703 * 109.49470 * 181.32588 * 14 13 12 17 17 H 1.07995 * 120.00270 * 0.16166 * 16 14 13 18 18 C 1.37872 * 119.99520 * 180.16123 * 16 14 13 19 19 N 1.31512 * 120.00479 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99792 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47290 * 60.00172 * 20 18 16 22 22 H 1.48500 * 109.47265 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47410 * 300.00087 * 20 18 16 24 24 C 1.46929 * 120.63490 * 175.08840 * 10 8 7 25 25 C 1.52993 * 117.50153 * 88.77718 * 4 3 2 26 26 C 1.53004 * 117.49615 * 157.43639 * 4 3 2 27 27 H 1.09004 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47055 * 300.00134 * 1 2 3 29 29 H 1.09003 * 109.47422 * 59.99917 * 1 2 3 30 30 H 1.08998 * 109.47256 * 60.00281 * 3 2 1 31 31 H 1.09003 * 109.47051 * 299.99479 * 3 2 1 32 32 H 1.09005 * 109.46516 * 174.88656 * 5 4 3 33 33 H 1.08998 * 109.46735 * 54.88893 * 5 4 3 34 34 H 1.08998 * 109.47144 * 65.01100 * 6 5 4 35 35 H 1.08997 * 109.47682 * 305.00287 * 6 5 4 36 36 H 0.97004 * 119.99912 * 0.02562 * 7 6 5 37 37 H 1.08995 * 109.58500 * 246.19971 * 11 10 8 38 38 H 1.09001 * 109.58198 * 6.47802 * 11 10 8 39 39 H 1.09005 * 109.49079 * 174.65927 * 12 11 10 40 40 H 1.09000 * 109.49954 * 294.74831 * 12 11 10 41 41 H 1.09000 * 109.41607 * 178.67300 * 13 12 11 42 42 H 1.08999 * 109.42120 * 58.74439 * 13 12 11 43 43 H 0.97003 * 120.00469 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.58414 * 353.38276 * 24 10 8 45 45 H 1.08995 * 109.58368 * 113.80126 * 24 10 8 46 46 H 1.09004 * 117.49891 * 215.00232 * 25 4 3 47 47 H 1.08999 * 117.49901 * 0.02562 * 25 4 3 48 48 H 1.08998 * 117.50060 * 359.97165 * 26 4 3 49 49 H 1.09005 * 117.49312 * 144.99456 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7423 1.9398 -0.0006 5 6 4.4834 1.2650 1.1554 6 6 4.0793 1.9254 2.4750 7 7 4.8759 1.3613 3.5674 8 6 4.6914 1.7955 4.8299 9 8 3.8028 2.5880 5.0765 10 7 5.4917 1.3511 5.8191 11 6 6.4988 0.3136 5.5582 12 6 7.8655 0.8191 6.0308 13 6 7.7638 1.2449 7.5004 14 6 6.7511 2.3844 7.6359 15 1 7.0631 3.2241 7.0150 16 6 6.6770 2.8229 9.0758 17 1 7.2926 2.3394 9.8199 18 6 5.8233 3.8412 9.4432 19 7 5.0733 4.4297 8.5373 20 14 5.7319 4.3852 11.2279 21 1 7.0678 4.8601 11.6697 22 1 4.7458 5.4877 11.3595 23 1 5.3091 3.2401 12.0735 24 6 5.3734 1.8947 7.1790 25 6 4.4470 1.9908 -1.3577 26 6 4.3028 3.2648 -0.5215 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8032 2.2370 0.8900 31 1 1.8032 2.2370 -0.8901 32 1 5.5584 1.3722 1.0097 33 1 4.2244 0.2066 1.1844 34 1 3.0217 1.7418 2.6643 35 1 4.2563 2.9992 2.4131 36 1 5.5368 0.6759 3.3820 37 1 6.2372 -0.5944 6.1014 38 1 6.5370 0.1019 4.4896 39 1 8.6028 0.0226 5.9295 40 1 8.1669 1.6735 5.4248 41 1 8.7399 1.5834 7.8480 42 1 7.4382 0.3963 8.1020 43 1 4.4723 5.1459 8.7958 44 1 4.6707 2.7280 7.1796 45 1 5.0200 1.1156 7.8544 46 1 5.4386 1.5435 -1.4270 47 1 3.8275 1.9019 -2.2501 48 1 3.5885 4.0135 -0.8642 49 1 5.1996 3.6557 -0.0406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595743798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:45 Heat of formation + Delta-G solvation = -14.972513 kcal Electronic energy + Delta-G solvation = -26048.323590 eV Core-core repulsion = 22523.002564 eV Total energy + Delta-G solvation = -3525.321026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.70208 -38.71159 -36.78321 -34.49315 -33.25902 -31.71727 -30.25827 -29.62839 -29.37803 -28.31409 -25.05127 -24.65422 -23.14813 -22.42538 -21.75502 -20.12122 -19.47750 -18.56249 -17.44912 -16.42080 -16.16731 -15.91085 -15.69482 -15.16427 -14.79538 -14.53536 -14.30965 -14.01456 -13.82840 -13.73456 -13.66514 -13.39896 -13.15047 -12.72457 -12.60265 -12.53716 -12.15435 -12.05900 -11.89539 -11.76787 -11.56897 -11.28924 -10.94242 -10.85761 -10.57556 -10.49274 -10.40776 -10.34989 -10.18098 -9.83410 -9.75935 -9.37023 -9.05628 -8.90904 -8.62706 -8.37404 -7.87779 -7.56563 -5.94198 -4.03274 1.38794 2.34321 3.25976 3.35921 3.40988 3.42328 3.55123 3.95096 4.26083 4.40477 4.43022 4.49052 4.63609 4.71115 4.85132 4.88532 5.05485 5.14768 5.32356 5.34275 5.35628 5.39679 5.42008 5.43511 5.52494 5.55770 5.65579 5.67244 5.82872 5.87279 6.02358 6.11097 6.12581 6.21018 6.35107 6.63477 6.71692 6.86235 6.92798 7.03546 7.12990 7.41050 7.57391 7.80084 7.98430 8.11933 8.45724 8.67818 9.00103 9.34804 9.62012 11.10792 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002584 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.759764 B =10832.607028 C =11249.457408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.252 6.252 3 C -0.049 4.049 4 C -0.108 4.108 5 C -0.093 4.093 6 C 0.146 3.854 7 N -0.757 5.757 8 C 0.701 3.299 9 O -0.585 6.585 10 N -0.623 5.623 11 C 0.116 3.884 12 C -0.133 4.133 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.130 3.870 25 C -0.164 4.164 26 C -0.163 4.163 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.389 0.611 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.264 0.736 44 H 0.122 0.878 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 -8.697 -20.938 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.025 6.025 3 C -0.197 4.197 4 C -0.109 4.109 5 C -0.131 4.131 6 C 0.021 3.979 7 N -0.417 5.417 8 C 0.402 3.598 9 O -0.463 6.463 10 N -0.360 5.360 11 C -0.009 4.009 12 C -0.172 4.172 13 C -0.147 4.147 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.009 3.991 25 C -0.201 4.201 26 C -0.202 4.202 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.225 0.775 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.140 0.860 45 H 0.056 0.944 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.117 -8.821 -20.745 22.757 hybrid contribution -0.620 0.991 0.832 1.435 sum -3.737 -7.830 -19.913 21.721 Atomic orbital electron populations 1.23411 0.94799 1.06463 1.04869 1.86889 1.06606 1.11052 1.97984 1.22946 0.96965 0.94679 1.05122 1.20893 0.91847 1.02037 0.96153 1.21326 0.99422 1.00353 0.91982 1.20972 0.95454 0.97507 0.83949 1.45300 1.44313 1.45787 1.06261 1.15931 0.82392 0.81211 0.80217 1.90911 1.34573 1.38606 1.82195 1.47772 1.35859 1.41273 1.11090 1.21479 0.89385 0.91157 0.98833 1.22003 0.95511 1.00299 0.99375 1.21668 1.00405 0.99812 0.92841 1.18980 0.90042 0.92375 0.96537 0.95421 1.21036 1.23780 1.18152 0.93066 0.92458 1.25053 0.95508 0.96156 0.97300 1.69886 1.24761 1.24171 1.32825 0.86664 0.77737 0.78271 0.85347 1.20333 1.21288 1.20268 1.22159 1.02561 0.98479 0.75894 1.23088 1.01941 1.01328 0.93739 1.23139 1.03206 0.90652 1.03186 0.88149 0.90367 0.90735 0.89222 0.90085 0.91031 0.90030 0.91964 0.92109 0.77480 0.92206 0.92195 0.92360 0.92235 0.93130 0.93211 0.92634 0.86002 0.94374 0.88422 0.88573 0.88556 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 10.76 101.05 1.09 0.16 16 2 S -0.25 -2.43 21.21 -107.50 -2.28 -4.71 16 3 C -0.05 -0.43 5.56 37.16 0.21 -0.23 16 4 C -0.11 -0.95 1.61 -154.50 -0.25 -1.20 16 5 C -0.09 -0.93 4.99 -26.73 -0.13 -1.06 16 6 C 0.15 2.00 5.42 -4.04 -0.02 1.98 16 7 N -0.76 -11.85 5.47 -65.23 -0.36 -12.21 16 8 C 0.70 14.87 8.30 -86.93 -0.72 14.15 16 9 O -0.59 -15.17 15.78 5.28 0.08 -15.09 16 10 N -0.62 -12.96 2.97 -178.50 -0.53 -13.50 16 11 C 0.12 1.84 6.42 -3.71 -0.02 1.81 16 12 C -0.13 -2.17 6.11 -26.45 -0.16 -2.33 16 13 C -0.11 -2.21 5.11 -26.53 -0.14 -2.34 16 14 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -14.32 8.56 -34.44 -0.29 -14.61 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -26.06 11.39 55.43 0.63 -25.43 16 20 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.13 3.24 5.39 -3.71 -0.02 3.22 16 25 C -0.16 -1.23 9.92 -26.70 -0.26 -1.49 16 26 C -0.16 -1.30 9.97 -26.69 -0.27 -1.57 16 27 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.09 0.86 7.44 -51.92 -0.39 0.48 16 31 H 0.08 0.61 8.10 -51.92 -0.42 0.19 16 32 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 33 H 0.08 0.84 7.17 -51.93 -0.37 0.47 16 34 H 0.06 0.93 7.42 -51.93 -0.39 0.55 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.39 4.97 5.93 -40.82 -0.24 4.73 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.75 5.56 -51.93 -0.29 0.46 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.12 3.57 5.15 -51.93 -0.27 3.31 16 45 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -32.68 396.41 -11.47 -44.15 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.67 Total: 5.35 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.30 Total: -1.04 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.26 Total: -51.13 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.28 Total: -4.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.68 -11.47 -44.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595743798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.176 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds