Wall clock time and date at job start Tue Mar 31 2020 14:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81391 * 102.99874 * 2 1 4 4 C 1.53006 * 109.46880 * 180.02562 * 3 2 1 5 5 C 1.53005 * 115.54641 * 303.10143 * 4 3 2 6 6 C 1.52998 * 109.46927 * 294.88274 * 5 4 3 7 7 N 1.46505 * 109.46823 * 185.00176 * 6 5 4 8 8 C 1.34771 * 120.00213 * 179.97438 * 7 6 5 9 9 O 1.21595 * 120.00035 * 5.00404 * 8 7 6 10 10 N 1.34773 * 120.00320 * 184.99503 * 8 7 6 11 11 C 1.46933 * 120.63117 * 355.07393 * 10 8 7 12 12 C 1.53190 * 108.89124 * 126.33658 * 11 10 8 13 13 C 1.53345 * 109.15202 * 54.58343 * 12 11 10 14 14 C 1.53048 * 109.60351 * 298.70609 * 13 12 11 15 15 H 1.08996 * 109.49451 * 301.42314 * 14 13 12 16 16 C 1.50703 * 109.49470 * 181.32588 * 14 13 12 17 17 H 1.07995 * 120.00270 * 0.16166 * 16 14 13 18 18 C 1.37872 * 119.99520 * 180.16123 * 16 14 13 19 19 N 1.31512 * 120.00479 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99792 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47290 * 60.00172 * 20 18 16 22 22 H 1.48500 * 109.47265 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47410 * 300.00087 * 20 18 16 24 24 C 1.46929 * 120.63490 * 175.08840 * 10 8 7 25 25 C 1.52993 * 117.50153 * 88.77718 * 4 3 2 26 26 C 1.53004 * 117.49615 * 157.43639 * 4 3 2 27 27 H 1.09004 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47055 * 300.00134 * 1 2 3 29 29 H 1.09003 * 109.47422 * 59.99917 * 1 2 3 30 30 H 1.08998 * 109.47256 * 60.00281 * 3 2 1 31 31 H 1.09003 * 109.47051 * 299.99479 * 3 2 1 32 32 H 1.09005 * 109.46516 * 174.88656 * 5 4 3 33 33 H 1.08998 * 109.46735 * 54.88893 * 5 4 3 34 34 H 1.08998 * 109.47144 * 65.01100 * 6 5 4 35 35 H 1.08997 * 109.47682 * 305.00287 * 6 5 4 36 36 H 0.97004 * 119.99912 * 0.02562 * 7 6 5 37 37 H 1.08995 * 109.58500 * 246.19971 * 11 10 8 38 38 H 1.09001 * 109.58198 * 6.47802 * 11 10 8 39 39 H 1.09005 * 109.49079 * 174.65927 * 12 11 10 40 40 H 1.09000 * 109.49954 * 294.74831 * 12 11 10 41 41 H 1.09000 * 109.41607 * 178.67300 * 13 12 11 42 42 H 1.08999 * 109.42120 * 58.74439 * 13 12 11 43 43 H 0.97003 * 120.00469 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.58414 * 353.38276 * 24 10 8 45 45 H 1.08995 * 109.58368 * 113.80126 * 24 10 8 46 46 H 1.09004 * 117.49891 * 215.00232 * 25 4 3 47 47 H 1.08999 * 117.49901 * 0.02562 * 25 4 3 48 48 H 1.08998 * 117.50060 * 359.97165 * 26 4 3 49 49 H 1.09005 * 117.49312 * 144.99456 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7423 1.9398 -0.0006 5 6 4.4834 1.2650 1.1554 6 6 4.0793 1.9254 2.4750 7 7 4.8759 1.3613 3.5674 8 6 4.6914 1.7955 4.8299 9 8 3.8028 2.5880 5.0765 10 7 5.4917 1.3511 5.8191 11 6 6.4988 0.3136 5.5582 12 6 7.8655 0.8191 6.0308 13 6 7.7638 1.2449 7.5004 14 6 6.7511 2.3844 7.6359 15 1 7.0631 3.2241 7.0150 16 6 6.6770 2.8229 9.0758 17 1 7.2926 2.3394 9.8199 18 6 5.8233 3.8412 9.4432 19 7 5.0733 4.4297 8.5373 20 14 5.7319 4.3852 11.2279 21 1 7.0678 4.8601 11.6697 22 1 4.7458 5.4877 11.3595 23 1 5.3091 3.2401 12.0735 24 6 5.3734 1.8947 7.1790 25 6 4.4470 1.9908 -1.3577 26 6 4.3028 3.2648 -0.5215 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8032 2.2370 0.8900 31 1 1.8032 2.2370 -0.8901 32 1 5.5584 1.3722 1.0097 33 1 4.2244 0.2066 1.1844 34 1 3.0217 1.7418 2.6643 35 1 4.2563 2.9992 2.4131 36 1 5.5368 0.6759 3.3820 37 1 6.2372 -0.5944 6.1014 38 1 6.5370 0.1019 4.4896 39 1 8.6028 0.0226 5.9295 40 1 8.1669 1.6735 5.4248 41 1 8.7399 1.5834 7.8480 42 1 7.4382 0.3963 8.1020 43 1 4.4723 5.1459 8.7958 44 1 4.6707 2.7280 7.1796 45 1 5.0200 1.1156 7.8544 46 1 5.4386 1.5435 -1.4270 47 1 3.8275 1.9019 -2.2501 48 1 3.5885 4.0135 -0.8642 49 1 5.1996 3.6557 -0.0406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595743798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:44 Heat of formation + Delta-G solvation = -33.911863 kcal Electronic energy + Delta-G solvation = -26049.144862 eV Core-core repulsion = 22523.002564 eV Total energy + Delta-G solvation = -3526.142297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28057 -39.52489 -38.42185 -35.96002 -35.16126 -33.43132 -31.66625 -30.95485 -30.11451 -29.06246 -27.02715 -26.15753 -24.28958 -23.42365 -23.13211 -21.72470 -20.66340 -19.84761 -19.01308 -18.19048 -17.31585 -17.14865 -16.74753 -16.56125 -16.15208 -15.91927 -15.42991 -15.19426 -15.12731 -14.90842 -14.81604 -14.48467 -14.36756 -14.28341 -13.84625 -13.81287 -13.52474 -13.31362 -13.05942 -12.84192 -12.68310 -12.45562 -12.31612 -12.27764 -12.23240 -12.21670 -11.82973 -11.62196 -11.26645 -11.23345 -11.09250 -10.93903 -10.80691 -10.50025 -10.45165 -10.13314 -9.23665 -8.61444 -8.08738 -6.26250 0.72517 1.41293 1.43212 1.51462 1.68345 1.80409 2.27808 2.42976 2.85700 3.06440 3.21050 3.61964 3.72400 3.90028 3.95272 4.07488 4.17489 4.20740 4.30592 4.31613 4.32234 4.34766 4.54233 4.56214 4.62125 4.67881 4.74719 4.82294 4.83073 4.85523 4.87397 4.99212 5.07445 5.11901 5.14659 5.19735 5.28253 5.28883 5.30230 5.35327 5.56638 5.59267 5.66843 5.90671 5.99245 6.19342 6.37573 6.86766 7.16281 7.43655 7.70696 8.94258 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002584 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.759764 B =10832.607028 C =11249.457408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.290 6.290 3 C -0.041 4.041 4 C -0.123 4.123 5 C -0.078 4.078 6 C 0.149 3.851 7 N -0.733 5.733 8 C 0.693 3.307 9 O -0.643 6.643 10 N -0.628 5.628 11 C 0.109 3.891 12 C -0.125 4.125 13 C -0.105 4.105 14 C 0.039 3.961 15 H -0.015 1.015 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.915 5.915 20 Si 0.958 3.042 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.144 3.856 25 C -0.147 4.147 26 C -0.165 4.165 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.408 0.592 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.259 0.741 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -10.734 -22.347 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.064 6.064 3 C -0.189 4.189 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.025 3.975 7 N -0.393 5.393 8 C 0.394 3.606 9 O -0.524 6.524 10 N -0.364 5.364 11 C -0.013 4.013 12 C -0.163 4.163 13 C -0.143 4.143 14 C 0.020 3.980 15 H 0.003 0.997 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.554 5.554 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.215 1.215 23 H -0.192 1.192 24 C 0.021 3.979 25 C -0.184 4.184 26 C -0.204 4.204 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.247 0.753 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.630 -10.921 -22.196 24.791 hybrid contribution -1.081 1.618 1.237 2.306 sum -2.712 -9.303 -20.958 23.090 Atomic orbital electron populations 1.23448 0.92622 1.07278 1.05418 1.86931 1.09175 1.12188 1.98056 1.22900 0.97129 0.93830 1.05039 1.20891 0.91821 1.02982 0.96762 1.21202 1.00408 0.99981 0.89998 1.21043 0.94406 0.97011 0.85061 1.45085 1.44287 1.45380 1.04563 1.16216 0.81868 0.80828 0.81692 1.90868 1.37056 1.41189 1.83335 1.47677 1.37011 1.42161 1.09510 1.21865 0.87661 0.90010 1.01771 1.21958 0.96823 1.01505 0.95982 1.21563 0.98609 0.97905 0.96213 1.18907 0.91546 0.92973 0.94597 0.99652 1.21499 1.23402 1.18090 0.94518 0.91894 1.25918 0.95202 0.96423 1.01546 1.70098 1.25611 1.24681 1.34975 0.85614 0.77955 0.77885 0.80233 1.19218 1.21540 1.19211 1.21563 1.01295 0.96741 0.78296 1.23144 1.02147 1.00116 0.92965 1.23191 1.03140 0.90808 1.03277 0.87217 0.90725 0.89279 0.90769 0.88652 0.89489 0.89895 0.93646 0.93701 0.75347 0.90384 0.88186 0.87635 0.93105 0.92939 0.92464 0.93214 0.90825 0.95035 0.87544 0.87632 0.87910 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 10.76 113.37 1.22 -0.39 16 2 S -0.29 -5.32 21.21 -56.49 -1.20 -6.51 16 3 C -0.04 -0.69 5.56 71.98 0.40 -0.29 16 4 C -0.12 -2.00 1.61 -52.18 -0.08 -2.08 16 5 C -0.08 -1.44 4.99 30.60 0.15 -1.29 16 6 C 0.15 4.09 5.42 86.38 0.47 4.56 16 7 N -0.73 -22.42 5.47 -478.54 -2.62 -25.03 16 8 C 0.69 30.02 8.30 179.06 1.49 31.50 16 9 O -0.64 -35.21 15.78 -4.01 -0.06 -35.27 16 10 N -0.63 -26.21 2.97 -836.90 -2.49 -28.70 16 11 C 0.11 3.14 6.42 86.36 0.55 3.70 16 12 C -0.12 -3.65 6.11 30.77 0.19 -3.46 16 13 C -0.11 -4.09 5.11 30.73 0.16 -3.94 16 14 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 15 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 16 C -0.54 -30.07 8.56 25.60 0.22 -29.85 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 18 C 0.01 0.49 5.30 84.65 0.45 0.94 16 19 N -0.92 -56.99 11.39 21.44 0.24 -56.75 16 20 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.14 7.47 5.39 86.36 0.47 7.94 16 25 C -0.15 -1.83 9.92 30.62 0.30 -1.53 16 26 C -0.17 -2.40 9.97 30.62 0.31 -2.09 16 27 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.46 7.44 -2.39 -0.02 1.44 16 31 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 32 H 0.09 1.36 8.09 -2.38 -0.02 1.34 16 33 H 0.08 1.56 7.17 -2.39 -0.02 1.54 16 34 H 0.05 1.41 7.42 -2.39 -0.02 1.39 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.41 9.31 5.93 -92.71 -0.55 8.76 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.10 2.08 5.56 -2.39 -0.01 2.06 16 39 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.07 4.59 5.15 -2.38 -0.01 4.58 16 45 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -76.79 396.41 2.53 -74.26 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.37 Total: 25.28 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.26 Total: 5.70 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -4.86 Total: -110.48 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.06 Total: -35.27 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -1.20 Total: -6.51 kcal Total: -76.79 2.53 -74.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595743798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.351 kcal (2) G-P(sol) polarization free energy of solvation -76.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds