Wall clock time and date at job start Tue Mar 31 2020 14:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81391 * 102.99965 * 2 1 4 4 C 1.53009 * 109.47295 * 180.02562 * 3 2 1 5 5 C 1.53000 * 115.54645 * 294.06686 * 4 3 2 6 6 C 1.53001 * 109.47252 * 294.27511 * 5 4 3 7 7 N 1.46502 * 109.46937 * 175.21307 * 6 5 4 8 8 C 1.34774 * 119.99880 * 180.02562 * 7 6 5 9 9 O 1.21593 * 120.00232 * 5.60445 * 8 7 6 10 10 N 1.34774 * 120.00230 * 185.60860 * 8 7 6 11 11 C 1.46933 * 120.62852 * 5.47208 * 10 8 7 12 12 C 1.52761 * 109.00760 * 233.58491 * 11 10 8 13 13 C 1.53038 * 109.38400 * 305.58733 * 12 11 10 14 14 C 1.53044 * 109.53894 * 61.24000 * 13 12 11 15 15 H 1.09003 * 109.49617 * 58.58432 * 14 13 12 16 16 C 1.50699 * 109.52632 * 178.66563 * 14 13 12 17 17 H 1.08000 * 119.99654 * 359.85684 * 16 14 13 18 18 C 1.37879 * 119.99947 * 179.85245 * 16 14 13 19 19 N 1.31514 * 120.00134 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99861 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47266 * 90.00170 * 20 18 16 22 22 H 1.48500 * 109.47076 * 210.00329 * 20 18 16 23 23 H 1.48507 * 109.46918 * 330.00413 * 20 18 16 24 24 C 1.46927 * 120.63248 * 185.75298 * 10 8 7 25 25 C 1.52999 * 117.49901 * 79.73411 * 4 3 2 26 26 C 1.52998 * 117.50111 * 148.39927 * 4 3 2 27 27 H 1.09003 * 109.46881 * 60.00113 * 1 2 3 28 28 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46945 * 299.99806 * 1 2 3 30 30 H 1.09000 * 109.47966 * 60.00086 * 3 2 1 31 31 H 1.09004 * 109.47309 * 299.99344 * 3 2 1 32 32 H 1.09001 * 109.47178 * 174.27421 * 5 4 3 33 33 H 1.08999 * 109.47218 * 54.27628 * 5 4 3 34 34 H 1.08995 * 109.47372 * 55.20803 * 6 5 4 35 35 H 1.09006 * 109.46934 * 295.20665 * 6 5 4 36 36 H 0.96997 * 120.00414 * 359.97438 * 7 6 5 37 37 H 1.08998 * 109.58332 * 353.41911 * 11 10 8 38 38 H 1.08998 * 109.58285 * 113.84665 * 11 10 8 39 39 H 1.08998 * 109.56054 * 185.55164 * 12 11 10 40 40 H 1.09001 * 109.38830 * 65.51629 * 12 11 10 41 41 H 1.09001 * 109.45977 * 301.22196 * 13 12 11 42 42 H 1.09004 * 109.45981 * 181.25956 * 13 12 11 43 43 H 0.96998 * 119.99906 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.58639 * 246.15131 * 24 10 8 45 45 H 1.08994 * 109.58318 * 6.43736 * 24 10 8 46 46 H 1.08994 * 117.49686 * 215.00523 * 25 4 3 47 47 H 1.09006 * 117.49689 * 0.03053 * 25 4 3 48 48 H 1.08998 * 117.49782 * 359.97240 * 26 4 3 49 49 H 1.08995 * 117.50218 * 144.97205 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7424 1.9399 -0.0006 5 6 4.4620 1.4548 1.2594 6 6 4.0470 2.3221 2.4496 7 7 4.6459 1.7881 3.6753 8 6 4.4165 2.3943 4.8569 9 8 3.6326 3.3215 4.9225 10 7 5.0560 1.9729 5.9659 11 6 6.0931 0.9353 5.8834 12 6 5.7501 -0.1896 6.8583 13 6 5.5549 0.3943 8.2594 14 6 4.3936 1.3909 8.2413 15 1 3.4869 0.8869 7.9066 16 6 4.1805 1.9413 9.6279 17 1 4.8088 1.6117 10.4421 18 6 3.1835 2.8657 9.8570 19 7 2.4182 3.2668 8.8655 20 14 2.9198 3.5485 11.5756 21 1 3.7490 4.7670 11.7568 22 1 1.4869 3.8933 11.7568 23 1 3.3142 2.5277 12.5796 24 6 4.7251 2.5378 7.2813 25 6 4.4710 1.7794 -1.3364 26 6 4.3137 3.1681 -0.7119 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8032 2.2372 0.8899 31 1 1.8032 2.2371 -0.8901 32 1 5.5397 1.5293 1.1138 33 1 4.1927 0.4169 1.4548 34 1 2.9610 2.3153 2.5430 35 1 4.3917 3.3441 2.2922 36 1 5.2070 0.9978 3.6365 37 1 6.1329 0.5384 4.8690 38 1 7.0598 1.3631 6.1489 39 1 6.5621 -0.9165 6.8770 40 1 4.8308 -0.6793 6.5369 41 1 6.4665 0.9047 8.5703 42 1 5.3322 -0.4102 8.9603 43 1 1.7170 3.9174 9.0267 44 1 5.5781 3.0989 7.6631 45 1 3.8642 3.1998 7.1884 46 1 5.4630 1.3282 -1.3174 47 1 3.8672 1.5514 -2.2148 48 1 3.6066 3.8531 -1.1798 49 1 5.2020 3.6308 -0.2820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595743799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:47 Heat of formation + Delta-G solvation = -34.132722 kcal Electronic energy + Delta-G solvation = -26071.771619 eV Core-core repulsion = 22545.619744 eV Total energy + Delta-G solvation = -3526.151875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28759 -39.52434 -38.44216 -35.96133 -35.16546 -33.44733 -31.68127 -30.95188 -30.11780 -29.07897 -27.03359 -26.16496 -24.29248 -23.42021 -23.12203 -21.71585 -20.67292 -19.84695 -19.00457 -18.19423 -17.32221 -17.14181 -16.77752 -16.54320 -16.19606 -15.88952 -15.45879 -15.19785 -15.12484 -14.95249 -14.65354 -14.55072 -14.43080 -14.28941 -13.84942 -13.76708 -13.54685 -13.34888 -13.05828 -12.87649 -12.65264 -12.50608 -12.30793 -12.27097 -12.23102 -12.17903 -11.82568 -11.62309 -11.26804 -11.22589 -11.09707 -10.94014 -10.80752 -10.51206 -10.45312 -10.13558 -9.23615 -8.62699 -8.09302 -6.26649 0.71727 1.41092 1.41541 1.52555 1.67066 1.81045 2.26464 2.42622 2.88295 3.06458 3.20752 3.62368 3.69650 3.90580 3.95934 4.07866 4.18058 4.22938 4.28846 4.30574 4.31243 4.33083 4.53059 4.54649 4.62043 4.69400 4.74949 4.82452 4.84016 4.85714 4.86129 5.00857 5.08252 5.11956 5.15633 5.19850 5.27886 5.30290 5.30343 5.35294 5.56524 5.59738 5.66627 5.90445 5.99059 6.18921 6.37326 6.86629 7.16007 7.43289 7.70304 8.93945 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.002683 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.261273 B =10434.825607 C =10882.391158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.291 6.291 3 C -0.042 4.042 4 C -0.124 4.124 5 C -0.078 4.078 6 C 0.147 3.853 7 N -0.734 5.734 8 C 0.693 3.307 9 O -0.643 6.643 10 N -0.628 5.628 11 C 0.110 3.890 12 C -0.127 4.127 13 C -0.105 4.105 14 C 0.038 3.962 15 H -0.015 1.015 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.915 5.915 20 Si 0.958 3.042 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.262 1.262 24 C 0.144 3.856 25 C -0.147 4.147 26 C -0.160 4.160 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.407 0.593 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.259 0.741 44 H 0.032 0.968 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.907 -7.178 -22.556 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.065 6.065 3 C -0.190 4.190 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.023 3.977 7 N -0.393 5.393 8 C 0.394 3.606 9 O -0.525 6.525 10 N -0.364 5.364 11 C -0.012 4.012 12 C -0.165 4.165 13 C -0.143 4.143 14 C 0.019 3.981 15 H 0.003 0.997 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.554 5.554 20 Si 0.784 3.216 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.186 1.186 24 C 0.021 3.979 25 C -0.185 4.185 26 C -0.199 4.199 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.246 0.754 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.126 0.874 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.862 -7.284 -22.550 24.411 hybrid contribution -1.515 1.422 1.236 2.418 sum 4.347 -5.861 -21.313 22.528 Atomic orbital electron populations 1.23439 0.92683 1.07274 1.05353 1.86914 1.09113 1.12416 1.98053 1.22926 0.97466 0.93655 1.04953 1.20875 0.91533 1.05678 0.94533 1.21201 1.00715 0.99233 0.90445 1.21077 0.96899 0.97423 0.82281 1.45092 1.56031 1.33057 1.05159 1.16218 0.80697 0.82223 0.81451 1.90867 1.41708 1.34094 1.85790 1.47687 1.40158 1.42208 1.06312 1.21776 0.90548 0.88101 1.00758 1.21847 1.02254 0.97587 0.94771 1.21504 0.98177 0.98005 0.96563 1.18919 0.93186 0.92516 0.93479 0.99733 1.21529 1.16347 1.24529 0.94993 0.91895 1.25923 0.95556 0.96948 1.00699 1.70109 1.20396 1.32058 1.32843 0.85550 0.77027 0.78865 0.80192 1.20033 1.21386 1.18613 1.21557 0.99059 0.97724 0.79537 1.23122 1.01901 0.99034 0.94399 1.23213 1.03154 0.90942 1.02592 0.89195 0.87208 0.90953 0.90952 0.88728 0.89027 0.90344 0.94280 0.92820 0.75365 0.88165 0.90285 0.87616 0.93207 0.92387 0.92980 0.93232 0.94919 0.90880 0.87429 0.87906 0.87951 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 10.76 113.37 1.22 -0.59 16 2 S -0.29 -5.70 21.67 -56.49 -1.22 -6.92 16 3 C -0.04 -0.75 5.65 71.99 0.41 -0.34 16 4 C -0.12 -2.00 1.49 -52.18 -0.08 -2.07 16 5 C -0.08 -1.41 5.09 30.59 0.16 -1.25 16 6 C 0.15 3.95 5.60 86.38 0.48 4.43 16 7 N -0.73 -22.25 5.45 -478.53 -2.61 -24.86 16 8 C 0.69 29.87 8.29 179.06 1.48 31.36 16 9 O -0.64 -35.05 15.79 -4.01 -0.06 -35.11 16 10 N -0.63 -26.12 2.98 -837.73 -2.50 -28.62 16 11 C 0.11 3.16 6.40 86.22 0.55 3.71 16 12 C -0.13 -3.73 6.06 30.53 0.19 -3.54 16 13 C -0.10 -4.08 5.11 30.62 0.16 -3.93 16 14 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 15 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 16 C -0.54 -30.03 8.57 25.60 0.22 -29.81 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 18 C 0.01 0.46 5.30 84.66 0.45 0.91 16 19 N -0.92 -57.05 11.39 21.45 0.24 -56.80 16 20 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 24 C 0.14 7.47 5.39 86.36 0.47 7.93 16 25 C -0.15 -1.79 9.94 30.62 0.30 -1.49 16 26 C -0.16 -2.11 9.94 30.62 0.30 -1.81 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.54 6.86 -2.39 -0.02 1.52 16 31 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 32 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.08 1.50 7.54 -2.39 -0.02 1.49 16 34 H 0.04 1.24 6.79 -2.39 -0.02 1.23 16 35 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.41 9.35 5.98 -92.71 -0.55 8.79 16 37 H 0.10 2.07 5.58 -2.39 -0.01 2.06 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.07 4.55 5.16 -2.39 -0.01 4.54 16 46 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -76.98 396.26 2.53 -74.44 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.37 Total: 25.34 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 6.28 Total: 5.46 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -4.86 Total: -110.28 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.06 Total: -35.11 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: -5.70 SS G_CDS: -1.22 Total: -6.92 kcal Total: -76.98 2.53 -74.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595743799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.312 kcal (2) G-P(sol) polarization free energy of solvation -76.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds