Wall clock time and date at job start Tue Mar 31 2020 15:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46907 * 2 1 4 4 C 1.50704 * 109.46823 * 119.99487 * 2 1 3 5 5 C 1.39203 * 119.55657 * 300.00195 * 4 2 1 6 6 C 1.36314 * 121.02665 * 179.97438 * 5 4 2 7 7 C 1.40142 * 119.58452 * 0.02562 * 6 5 4 8 8 N 1.34145 * 121.98821 * 180.02562 * 7 6 5 9 9 C 1.31179 * 120.46391 * 179.97438 * 8 7 6 10 10 N 1.32354 * 122.97454 * 359.97438 * 9 8 7 11 11 C 1.32621 * 121.49206 * 0.02562 * 10 9 8 12 12 N 1.37843 * 120.91925 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99424 * 59.87789 * 12 11 10 14 14 C 1.53239 * 109.33890 * 172.75230 * 13 12 11 15 15 N 1.47082 * 108.52268 * 53.82556 * 14 13 12 16 16 C 1.36938 * 120.88113 * 128.79845 * 15 14 13 17 17 H 1.08003 * 120.00071 * 209.23858 * 16 15 14 18 18 C 1.38817 * 120.00126 * 29.23077 * 16 15 14 19 19 N 1.31622 * 119.99636 * 13.12576 * 18 16 15 20 20 Si 1.86795 * 120.00068 * 193.12109 * 18 16 15 21 21 H 1.48499 * 109.46978 * 60.00403 * 20 18 16 22 22 H 1.48498 * 109.47020 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47206 * 300.00472 * 20 18 16 24 24 C 1.47077 * 118.23801 * 308.81611 * 15 14 13 25 25 C 1.46898 * 111.00009 * 295.58080 * 12 11 10 26 26 C 1.41607 * 119.29760 * 0.02562 * 7 6 5 27 27 C 1.36390 * 119.54688 * 119.72903 * 4 2 1 28 28 H 1.09002 * 109.46870 * 60.00178 * 1 2 3 29 29 H 1.09004 * 109.46734 * 300.00225 * 1 2 3 30 30 H 1.08988 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.46890 * 239.99579 * 2 1 3 32 32 H 1.08999 * 109.47842 * 59.99877 * 3 2 1 33 33 H 1.09000 * 109.46964 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47210 * 299.99613 * 3 2 1 35 35 H 1.08006 * 119.48381 * 359.97438 * 5 4 2 36 36 H 1.08001 * 120.20866 * 180.02562 * 6 5 4 37 37 H 1.08000 * 118.50887 * 179.97438 * 9 8 7 38 38 H 1.09007 * 109.48897 * 292.70379 * 13 12 11 39 39 H 1.08998 * 109.49622 * 52.78651 * 13 12 11 40 40 H 1.09004 * 109.62570 * 294.11815 * 14 13 12 41 41 H 1.09004 * 109.62983 * 173.53883 * 14 13 12 42 42 H 0.97005 * 119.99580 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.63222 * 291.47647 * 24 15 14 44 44 H 1.08999 * 109.62556 * 170.89444 * 24 15 14 45 45 H 1.09001 * 109.49007 * 307.20584 * 25 12 11 46 46 H 1.08998 * 109.49566 * 67.26138 * 25 12 11 47 47 H 1.08002 * 120.25246 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 6 1.6904 -0.2267 2.4903 6 6 2.1276 -0.8459 3.6232 7 6 2.9345 -1.9871 3.5204 8 7 3.3910 -2.6345 4.6030 9 6 4.1442 -3.7005 4.4721 10 7 4.4941 -4.1952 3.2954 11 6 4.0975 -3.6327 2.1618 12 7 4.4693 -4.1577 0.9426 13 6 3.9935 -5.5399 0.7976 14 6 4.2666 -6.0234 -0.6306 15 7 5.6930 -5.8223 -0.9273 16 6 6.4584 -6.8434 -1.4240 17 1 7.5162 -6.8794 -1.2090 18 6 5.8747 -7.8325 -2.2038 19 7 4.6599 -7.6627 -2.6812 20 14 6.8132 -9.4042 -2.5755 21 1 7.1415 -10.0971 -1.3038 22 1 5.9761 -10.2921 -3.4218 23 1 8.0681 -9.0725 -3.2969 24 6 6.2758 -4.4955 -0.6759 25 6 5.9236 -4.0722 0.7542 26 6 3.2822 -2.4768 2.2380 27 6 2.8113 -1.8217 1.0948 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0275 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.0689 0.6530 2.5712 36 1 1.8539 -0.4596 4.5939 37 1 4.4947 -4.1968 5.3650 38 1 4.5186 -6.1815 1.5054 39 1 2.9225 -5.5787 0.9963 40 1 3.6620 -5.4498 -1.3332 41 1 4.0214 -7.0824 -0.7119 42 1 4.2521 -8.3537 -3.2264 43 1 5.8644 -3.7750 -1.3828 44 1 7.3590 -4.5443 -0.7871 45 1 6.2524 -3.0465 0.9212 46 1 6.4218 -4.7338 1.4628 47 1 3.0670 -2.1902 0.1124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596110942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:34 Heat of formation + Delta-G solvation = 81.589671 kcal Electronic energy + Delta-G solvation = -27931.231080 eV Core-core repulsion = 24306.946105 eV Total energy + Delta-G solvation = -3624.284975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56924 -40.10407 -39.25004 -36.73765 -35.82404 -34.22091 -32.80124 -32.24904 -31.78322 -30.48957 -28.43375 -27.91111 -25.77857 -25.50483 -24.56315 -24.41926 -22.74301 -21.99378 -20.97557 -19.48859 -19.26985 -18.23955 -17.54417 -16.94645 -16.59433 -16.43732 -16.05840 -15.68376 -15.55101 -15.38987 -15.26517 -15.01963 -14.93409 -14.68884 -14.28621 -14.17507 -13.90108 -13.35857 -13.15971 -13.06317 -12.80971 -12.78575 -12.65150 -12.56952 -12.49933 -12.28404 -12.09870 -12.00489 -11.83569 -11.68267 -11.60348 -11.57663 -11.55637 -10.61580 -10.40914 -10.18569 -9.84321 -9.23626 -8.70663 -7.89314 -5.37367 -0.88690 -0.31109 0.79432 1.47728 1.49878 1.56474 1.92218 2.33552 2.50630 2.97101 3.12735 3.15905 3.27972 3.55795 3.58324 3.63993 3.70741 4.06082 4.14697 4.18254 4.19665 4.36122 4.36567 4.37717 4.44344 4.49690 4.54350 4.61396 4.73180 4.83068 4.87990 4.88897 4.91668 4.96683 5.06015 5.08236 5.13401 5.25072 5.28286 5.29965 5.36632 5.46469 5.59960 5.60581 5.61953 5.72596 5.76314 5.97305 6.11471 6.36209 7.03644 7.11529 7.79078 8.34602 9.17987 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.003420 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.546101 B = 8184.958228 C = 9378.943053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.078 4.078 5 C -0.055 4.055 6 C -0.112 4.112 7 C 0.139 3.861 8 N -0.523 5.523 9 C 0.299 3.701 10 N -0.581 5.581 11 C 0.385 3.615 12 N -0.484 5.484 13 C 0.063 3.937 14 C 0.193 3.807 15 N -0.611 5.611 16 C -0.268 4.268 17 H 0.067 0.933 18 C -0.044 4.044 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.274 1.274 24 C 0.151 3.849 25 C 0.065 3.935 26 C -0.148 4.148 27 C -0.068 4.068 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.219 0.781 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.010 0.990 41 H 0.063 0.937 42 H 0.252 0.748 43 H 0.028 0.972 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.034 0.966 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 18.800 10.389 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.078 4.078 5 C -0.076 4.076 6 C -0.131 4.131 7 C 0.012 3.988 8 N -0.237 5.237 9 C 0.009 3.991 10 N -0.299 5.299 11 C 0.135 3.865 12 N -0.208 5.208 13 C -0.065 4.065 14 C 0.067 3.933 15 N -0.335 5.335 16 C -0.398 4.398 17 H 0.085 0.915 18 C -0.240 4.240 19 N -0.579 5.579 20 Si 0.797 3.203 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.200 1.200 24 C 0.025 3.975 25 C -0.062 4.062 26 C -0.154 4.154 27 C -0.088 4.088 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.186 0.814 36 H 0.176 0.824 37 H 0.235 0.765 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.028 0.972 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.053 0.947 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.023 18.578 10.849 22.961 hybrid contribution 0.693 -1.594 -0.520 1.814 sum -7.330 16.984 10.329 21.186 Atomic orbital electron populations 1.21855 0.93022 1.01868 1.03247 1.20229 0.96920 0.96683 0.93908 1.21843 1.00835 0.93951 1.03225 1.20028 0.96562 0.94735 0.96475 1.21225 0.96754 0.99402 0.90232 1.20933 0.97581 0.93453 1.01112 1.19363 0.96107 0.96029 0.87317 1.68816 1.12877 1.09668 1.32384 1.25174 0.89791 0.89256 0.94908 1.68579 1.26157 1.34973 1.00178 1.20697 0.88130 0.89159 0.88475 1.59826 1.15641 1.21789 1.23538 1.22616 0.98633 0.85567 0.99708 1.20576 0.84414 0.99024 0.89272 1.44294 1.06973 1.07415 1.74821 1.19467 0.93098 1.02542 1.24669 0.91500 1.25830 0.98051 1.03017 0.97119 1.70126 1.16379 1.34353 1.37038 0.85327 0.77941 0.79486 0.77571 1.20646 1.21844 1.19989 1.21088 0.97412 0.86611 0.92391 1.22511 0.84173 1.00708 0.98848 1.19334 1.01919 0.97679 0.96450 1.20933 0.95821 0.94481 0.97590 0.91048 0.90992 0.93629 0.90898 0.91028 0.93350 0.91084 0.81436 0.82368 0.76511 0.95032 0.91323 0.97166 0.91903 0.93933 0.95370 0.91268 0.89794 0.94732 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.00 71.99 0.65 -1.17 16 2 C -0.06 -0.92 3.08 -11.54 -0.04 -0.95 16 3 C -0.14 -1.70 9.00 71.98 0.65 -1.06 16 4 C -0.08 -1.54 4.75 -20.06 -0.10 -1.63 16 5 C -0.06 -0.90 8.60 22.05 0.19 -0.71 16 6 C -0.11 -2.27 10.01 22.28 0.22 -2.04 16 7 C 0.14 3.87 6.61 40.08 0.27 4.14 16 8 N -0.52 -14.98 10.45 -193.95 -2.03 -17.00 16 9 C 0.30 8.55 12.22 180.90 2.21 10.76 16 10 N -0.58 -19.78 9.94 -196.75 -1.96 -21.74 16 11 C 0.38 13.26 5.31 134.02 0.71 13.97 16 12 N -0.48 -17.98 3.87 -699.25 -2.71 -20.69 16 13 C 0.06 2.61 5.39 86.38 0.47 3.08 16 14 C 0.19 9.53 5.38 86.35 0.46 10.00 16 15 N -0.61 -31.09 3.03 -698.11 -2.11 -33.20 16 16 C -0.27 -14.77 9.62 84.03 0.81 -13.96 16 17 H 0.07 3.58 7.86 -2.91 -0.02 3.56 16 18 C -0.04 -2.47 5.01 84.86 0.43 -2.04 16 19 N -0.93 -54.67 11.11 21.65 0.24 -54.43 16 20 Si 0.97 44.76 29.57 68.60 2.03 46.79 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.15 6.32 6.69 86.35 0.58 6.89 16 25 C 0.07 2.42 5.44 86.38 0.47 2.89 16 26 C -0.15 -4.49 5.75 -21.20 -0.12 -4.62 16 27 C -0.07 -1.80 9.18 22.25 0.20 -1.60 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.69 7.34 -2.39 -0.02 0.67 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.31 7.83 -2.39 -0.02 1.29 16 32 H 0.07 0.65 7.34 -2.39 -0.02 0.63 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.17 1.47 7.01 -2.91 -0.02 1.45 16 36 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.22 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.03 1.40 8.06 -2.38 -0.02 1.38 16 39 H 0.07 2.68 8.09 -2.39 -0.02 2.67 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 3.47 6.20 -2.38 -0.01 3.46 16 42 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 2.76 7.95 -2.39 -0.02 2.74 16 45 H 0.08 2.71 8.09 -2.39 -0.02 2.69 16 46 H 0.03 1.38 8.12 -2.39 -0.02 1.36 16 47 H 0.13 3.83 7.51 -2.91 -0.02 3.81 16 Total: -1.00 -66.41 375.02 2.48 -63.93 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.96 Total: 14.40 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 8.06 Total: 21.95 kcal Atomic # 7 Polarization: -138.50 SS G_CDS: -8.56 Total: -147.07 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.41 2.48 -63.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596110942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.523 kcal (2) G-P(sol) polarization free energy of solvation -66.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds