Wall clock time and date at job start Tue Mar 31 2020 14:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81404 * 102.99848 * 2 1 4 4 H 1.09001 * 109.47346 * 55.00456 * 3 2 1 5 5 C 1.52995 * 109.47315 * 295.00064 * 3 2 1 6 6 C 1.52999 * 109.47389 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47039 * 60.00293 * 6 5 3 8 8 C 1.53005 * 109.46852 * 300.00149 * 7 6 5 9 9 H 1.09000 * 109.46891 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.46914 * 300.00011 * 8 7 6 11 11 C 1.34784 * 119.99893 * 275.00308 * 10 8 7 12 12 O 1.21584 * 119.99606 * 354.91565 * 11 10 8 13 13 N 1.34773 * 119.99588 * 174.64229 * 11 10 8 14 14 C 1.46928 * 120.63576 * 5.02666 * 13 11 10 15 15 C 1.52757 * 109.00768 * 233.58351 * 14 13 11 16 16 C 1.53037 * 109.38292 * 305.58446 * 15 14 13 17 17 C 1.53039 * 109.53905 * 61.24249 * 16 15 14 18 18 H 1.08998 * 109.52481 * 58.60043 * 17 16 15 19 19 C 1.50697 * 109.50162 * 178.68337 * 17 16 15 20 20 H 1.08010 * 120.00018 * 359.83804 * 19 17 16 21 21 C 1.37877 * 120.00670 * 179.83649 * 19 17 16 22 22 N 1.31520 * 119.99692 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 120.00533 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47086 * 90.00186 * 23 21 19 25 25 H 1.48499 * 109.47326 * 209.99847 * 23 21 19 26 26 H 1.48497 * 109.47032 * 330.00341 * 23 21 19 27 27 C 1.46927 * 120.62524 * 185.30298 * 13 11 10 28 28 C 1.52995 * 109.47089 * 59.99990 * 8 7 6 29 29 H 1.09001 * 109.47139 * 60.00067 * 1 2 3 30 30 H 1.09004 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46897 * 300.00030 * 1 2 3 32 32 H 1.09005 * 109.47280 * 59.99774 * 5 3 2 33 33 H 1.09010 * 109.47204 * 300.00207 * 5 3 2 34 34 H 1.08996 * 109.46987 * 300.00271 * 6 5 3 35 35 H 1.09006 * 109.47144 * 179.97438 * 6 5 3 36 36 H 1.08997 * 109.47219 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47249 * 60.00138 * 7 6 5 38 38 H 0.97001 * 120.00097 * 95.00240 * 10 8 7 39 39 H 1.09002 * 109.58167 * 353.41515 * 14 13 11 40 40 H 1.09002 * 109.58620 * 113.83996 * 14 13 11 41 41 H 1.09004 * 109.56376 * 185.55095 * 15 14 13 42 42 H 1.08999 * 109.38717 * 65.50908 * 15 14 13 43 43 H 1.08997 * 109.46553 * 301.22268 * 16 15 14 44 44 H 1.09000 * 109.44932 * 181.25040 * 16 15 14 45 45 H 0.96994 * 120.00126 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.58800 * 246.15530 * 27 13 11 47 47 H 1.08994 * 109.59385 * 6.44009 * 27 13 11 48 48 H 1.08995 * 109.47315 * 60.00466 * 28 8 7 49 49 H 1.09006 * 109.46813 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 0.8419 5 6 1.7427 2.4016 -1.3073 6 6 2.0863 3.8926 -1.3070 7 6 3.6011 4.0668 -1.1811 8 6 4.0804 3.4327 0.1263 9 1 5.1596 3.5572 0.2162 10 7 3.4179 4.0863 1.2577 11 6 3.9280 5.2228 1.7724 12 8 4.9867 5.6554 1.3598 13 7 3.2617 5.8824 2.7406 14 6 2.0354 5.3196 3.3224 15 6 0.9180 6.3567 3.2266 16 6 1.3803 7.6629 3.8764 17 6 2.6048 8.1997 3.1317 18 1 2.3517 8.3622 2.0840 19 6 3.0397 9.5024 3.7520 20 1 2.4956 9.9089 4.5918 21 6 4.1322 10.1755 3.2475 22 7 4.7945 9.6808 2.2246 23 14 4.6708 11.7906 4.0159 24 1 5.6498 11.5210 5.0996 25 1 5.3030 12.6455 2.9793 26 1 3.4880 12.4892 4.5799 27 6 3.7445 7.1808 3.2302 28 6 3.7368 1.9418 0.1259 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.6634 2.2779 -1.3969 33 1 2.2353 1.9150 -2.1492 34 1 1.5934 4.3788 -0.4652 35 1 1.7452 4.3442 -2.2387 36 1 3.8459 5.1290 -1.1805 37 1 4.0940 3.5806 -2.0229 38 1 2.6121 3.7012 1.6363 39 1 1.7483 4.4233 2.7726 40 1 2.2091 5.0691 4.3689 41 1 0.0319 5.9873 3.7429 42 1 0.6799 6.5363 2.1782 43 1 1.6413 7.4778 4.9183 44 1 0.5757 8.3967 3.8285 45 1 5.5628 10.1544 1.8694 46 1 4.0603 7.0852 4.2691 47 1 4.5862 7.5109 2.6214 48 1 4.2298 1.4555 -0.7158 49 1 4.0779 1.4902 1.0575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596319340.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:24 Heat of formation + Delta-G solvation = -46.937933 kcal Electronic energy + Delta-G solvation = -27238.041915 eV Core-core repulsion = 23711.334765 eV Total energy + Delta-G solvation = -3526.707150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18758 -38.45975 -36.59177 -33.72844 -33.04593 -31.75332 -31.03887 -30.09887 -29.52779 -28.80280 -25.06475 -24.47841 -22.90698 -22.62690 -21.80884 -20.64521 -19.14980 -18.84504 -17.62084 -16.68396 -16.19075 -15.75160 -15.50001 -15.00142 -14.74382 -14.43280 -14.26480 -14.01995 -13.77030 -13.72610 -13.63612 -13.37847 -13.09155 -12.70790 -12.60998 -12.37793 -12.28710 -12.12464 -11.97230 -11.90789 -11.72437 -10.99311 -10.92918 -10.88717 -10.69917 -10.51260 -10.39706 -10.31774 -10.21804 -9.95027 -9.87253 -9.41138 -9.09389 -8.93907 -8.69022 -8.41022 -7.97143 -7.62522 -5.97305 -4.06196 1.39009 2.28014 3.23099 3.33040 3.39548 3.41635 3.88469 4.35951 4.38234 4.39681 4.46812 4.76648 4.81057 4.84827 4.95602 5.03562 5.13227 5.22592 5.25831 5.32652 5.33718 5.43238 5.49299 5.50788 5.60988 5.69403 5.77702 5.78942 5.96110 6.01020 6.09698 6.15196 6.22679 6.30695 6.32249 6.58902 6.66856 6.81340 6.90103 6.99234 7.08231 7.36294 7.52359 7.76398 7.94471 8.08090 8.42412 8.61764 8.97250 9.29308 9.59301 11.07740 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.003088 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.467201 B = 9064.836610 C = 9662.563552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.268 6.268 3 C -0.048 4.048 4 H 0.084 0.916 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.133 4.133 8 C 0.171 3.829 9 H 0.094 0.906 10 N -0.751 5.751 11 C 0.702 3.298 12 O -0.583 6.583 13 N -0.623 5.623 14 C 0.117 3.883 15 C -0.133 4.133 16 C -0.109 4.109 17 C 0.040 3.960 18 H 0.028 0.972 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.130 3.870 28 C -0.105 4.105 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.387 0.613 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.263 0.737 46 H 0.038 0.962 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 -18.722 -5.392 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.039 6.039 3 C -0.177 4.177 4 H 0.102 0.898 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.172 4.172 8 C 0.064 3.936 9 H 0.112 0.888 10 N -0.411 5.411 11 C 0.404 3.596 12 O -0.460 6.460 13 N -0.359 5.359 14 C -0.007 4.007 15 C -0.172 4.172 16 C -0.147 4.147 17 C 0.021 3.979 18 H 0.046 0.954 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.719 3.281 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.200 1.200 27 C 0.009 3.991 28 C -0.145 4.145 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.224 0.776 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.140 0.860 48 H 0.104 0.896 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.284 -19.264 -5.793 21.395 hybrid contribution -1.124 1.661 0.645 2.107 sum -8.409 -17.604 -5.147 20.176 Atomic orbital electron populations 1.23385 0.94300 1.06299 1.05013 1.86859 1.07324 1.11793 1.97938 1.23200 1.00370 0.92794 1.01313 0.89817 1.21877 1.00644 0.96428 0.96174 1.21500 0.96816 0.94759 1.02268 1.21976 0.95529 1.02559 0.97151 1.20654 0.98413 0.89226 0.85340 0.88774 1.45469 1.31540 1.27546 1.36540 1.15945 0.83735 0.80074 0.79895 1.90912 1.22438 1.68497 1.64191 1.47778 1.25824 1.23256 1.39054 1.21377 0.86095 0.95321 0.97952 1.21872 0.96611 0.97368 1.01324 1.21607 0.99708 0.94257 0.99133 1.18976 0.89790 0.92940 0.96178 0.95420 1.21070 1.13298 1.05228 1.16423 0.92432 1.25052 0.96497 0.97653 0.94810 1.69893 1.19515 1.38709 1.23484 0.86604 0.78768 0.83711 0.78973 1.20645 1.21230 1.19986 1.22169 1.01425 0.77567 0.97915 1.21671 0.92452 0.96380 1.03969 0.90422 0.88275 0.90497 0.92106 0.90613 0.91685 0.91627 0.90589 0.91226 0.77634 0.92523 0.92202 0.92420 0.92283 0.93199 0.93110 0.92677 0.94400 0.85954 0.89552 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.45 101.05 1.06 0.25 16 2 S -0.27 -2.45 21.79 -107.50 -2.34 -4.79 16 3 C -0.05 -0.43 2.48 -26.73 -0.07 -0.50 16 4 H 0.08 0.76 6.50 -51.92 -0.34 0.42 16 5 C -0.11 -0.96 5.11 -26.73 -0.14 -1.09 16 6 C -0.11 -1.19 5.77 -26.73 -0.15 -1.34 16 7 C -0.13 -1.62 5.60 -26.73 -0.15 -1.77 16 8 C 0.17 2.16 2.83 -67.93 -0.19 1.97 16 9 H 0.09 1.38 7.51 -51.93 -0.39 0.99 16 10 N -0.75 -10.87 4.15 -58.67 -0.24 -11.11 16 11 C 0.70 14.06 8.26 -86.92 -0.72 13.34 16 12 O -0.58 -14.36 15.41 5.29 0.08 -14.28 16 13 N -0.62 -12.43 2.98 -178.76 -0.53 -12.96 16 14 C 0.12 1.79 6.40 -3.93 -0.03 1.76 16 15 C -0.13 -2.10 6.06 -26.84 -0.16 -2.26 16 16 C -0.11 -2.15 5.11 -26.69 -0.14 -2.29 16 17 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 18 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 19 C -0.52 -14.12 8.56 -34.44 -0.29 -14.41 16 20 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.88 -25.67 11.39 55.43 0.63 -25.04 16 23 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.13 3.16 5.39 -3.71 -0.02 3.14 16 28 C -0.11 -1.03 4.90 -26.73 -0.13 -1.16 16 29 H 0.08 0.46 7.14 -51.92 -0.37 0.09 16 30 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.06 0.47 6.92 -51.93 -0.36 0.12 16 33 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.39 4.72 4.32 -40.82 -0.18 4.54 16 39 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.12 3.51 5.16 -51.93 -0.27 3.24 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -31.22 379.96 -11.60 -42.82 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.47 Total: 5.27 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.43 Total: -1.92 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.14 Total: -49.12 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.34 Total: -4.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.22 -11.60 -42.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596319340.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.116 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds