Wall clock time and date at job start Tue Mar 31 2020 14:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81404 * 102.99848 * 2 1 4 4 H 1.09001 * 109.47346 * 55.00456 * 3 2 1 5 5 C 1.52995 * 109.47315 * 295.00064 * 3 2 1 6 6 C 1.52999 * 109.47389 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47039 * 60.00293 * 6 5 3 8 8 C 1.53005 * 109.46852 * 300.00149 * 7 6 5 9 9 H 1.09000 * 109.46891 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.46914 * 300.00011 * 8 7 6 11 11 C 1.34784 * 119.99893 * 275.00308 * 10 8 7 12 12 O 1.21584 * 119.99606 * 354.91565 * 11 10 8 13 13 N 1.34773 * 119.99588 * 174.64229 * 11 10 8 14 14 C 1.46928 * 120.63576 * 5.02666 * 13 11 10 15 15 C 1.52757 * 109.00768 * 233.58351 * 14 13 11 16 16 C 1.53037 * 109.38292 * 305.58446 * 15 14 13 17 17 C 1.53039 * 109.53905 * 61.24249 * 16 15 14 18 18 H 1.08998 * 109.52481 * 58.60043 * 17 16 15 19 19 C 1.50697 * 109.50162 * 178.68337 * 17 16 15 20 20 H 1.08010 * 120.00018 * 359.83804 * 19 17 16 21 21 C 1.37877 * 120.00670 * 179.83649 * 19 17 16 22 22 N 1.31520 * 119.99692 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 120.00533 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47086 * 90.00186 * 23 21 19 25 25 H 1.48499 * 109.47326 * 209.99847 * 23 21 19 26 26 H 1.48497 * 109.47032 * 330.00341 * 23 21 19 27 27 C 1.46927 * 120.62524 * 185.30298 * 13 11 10 28 28 C 1.52995 * 109.47089 * 59.99990 * 8 7 6 29 29 H 1.09001 * 109.47139 * 60.00067 * 1 2 3 30 30 H 1.09004 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46897 * 300.00030 * 1 2 3 32 32 H 1.09005 * 109.47280 * 59.99774 * 5 3 2 33 33 H 1.09010 * 109.47204 * 300.00207 * 5 3 2 34 34 H 1.08996 * 109.46987 * 300.00271 * 6 5 3 35 35 H 1.09006 * 109.47144 * 179.97438 * 6 5 3 36 36 H 1.08997 * 109.47219 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47249 * 60.00138 * 7 6 5 38 38 H 0.97001 * 120.00097 * 95.00240 * 10 8 7 39 39 H 1.09002 * 109.58167 * 353.41515 * 14 13 11 40 40 H 1.09002 * 109.58620 * 113.83996 * 14 13 11 41 41 H 1.09004 * 109.56376 * 185.55095 * 15 14 13 42 42 H 1.08999 * 109.38717 * 65.50908 * 15 14 13 43 43 H 1.08997 * 109.46553 * 301.22268 * 16 15 14 44 44 H 1.09000 * 109.44932 * 181.25040 * 16 15 14 45 45 H 0.96994 * 120.00126 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.58800 * 246.15530 * 27 13 11 47 47 H 1.08994 * 109.59385 * 6.44009 * 27 13 11 48 48 H 1.08995 * 109.47315 * 60.00466 * 28 8 7 49 49 H 1.09006 * 109.46813 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 0.8419 5 6 1.7427 2.4016 -1.3073 6 6 2.0863 3.8926 -1.3070 7 6 3.6011 4.0668 -1.1811 8 6 4.0804 3.4327 0.1263 9 1 5.1596 3.5572 0.2162 10 7 3.4179 4.0863 1.2577 11 6 3.9280 5.2228 1.7724 12 8 4.9867 5.6554 1.3598 13 7 3.2617 5.8824 2.7406 14 6 2.0354 5.3196 3.3224 15 6 0.9180 6.3567 3.2266 16 6 1.3803 7.6629 3.8764 17 6 2.6048 8.1997 3.1317 18 1 2.3517 8.3622 2.0840 19 6 3.0397 9.5024 3.7520 20 1 2.4956 9.9089 4.5918 21 6 4.1322 10.1755 3.2475 22 7 4.7945 9.6808 2.2246 23 14 4.6708 11.7906 4.0159 24 1 5.6498 11.5210 5.0996 25 1 5.3030 12.6455 2.9793 26 1 3.4880 12.4892 4.5799 27 6 3.7445 7.1808 3.2302 28 6 3.7368 1.9418 0.1259 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.6634 2.2779 -1.3969 33 1 2.2353 1.9150 -2.1492 34 1 1.5934 4.3788 -0.4652 35 1 1.7452 4.3442 -2.2387 36 1 3.8459 5.1290 -1.1805 37 1 4.0940 3.5806 -2.0229 38 1 2.6121 3.7012 1.6363 39 1 1.7483 4.4233 2.7726 40 1 2.2091 5.0691 4.3689 41 1 0.0319 5.9873 3.7429 42 1 0.6799 6.5363 2.1782 43 1 1.6413 7.4778 4.9183 44 1 0.5757 8.3967 3.8285 45 1 5.5628 10.1544 1.8694 46 1 4.0603 7.0852 4.2691 47 1 4.5862 7.5109 2.6214 48 1 4.2298 1.4555 -0.7158 49 1 4.0779 1.4902 1.0575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596319340.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:23 Heat of formation + Delta-G solvation = -64.390947 kcal Electronic energy + Delta-G solvation = -27238.798734 eV Core-core repulsion = 23711.334765 eV Total energy + Delta-G solvation = -3527.463970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57308 -39.68136 -38.17524 -35.44146 -34.55681 -33.36822 -31.90073 -31.61664 -30.70668 -29.46056 -27.01783 -26.06049 -23.77899 -23.62685 -23.36338 -22.07590 -20.58960 -20.12630 -19.14401 -18.22502 -17.48397 -17.07687 -16.58937 -16.45860 -16.19015 -15.78965 -15.33167 -15.20545 -15.16258 -14.91877 -14.48366 -14.35399 -14.33841 -14.11088 -13.99272 -13.71364 -13.55924 -13.21646 -13.15801 -12.88662 -12.81468 -12.65028 -12.53694 -12.29054 -12.22798 -11.86459 -11.77794 -11.63333 -11.54064 -11.21922 -11.17361 -10.95267 -10.82317 -10.68978 -10.51363 -10.06875 -9.24759 -8.63797 -8.09600 -6.26748 0.74529 1.40710 1.41258 1.52038 1.67339 1.80338 2.30427 2.42253 3.03486 3.20237 3.58713 3.63667 3.86355 4.00451 4.08562 4.13334 4.16487 4.26188 4.32547 4.38262 4.38596 4.41331 4.57831 4.59269 4.62378 4.69634 4.78915 4.81150 4.84700 4.92536 4.99371 5.02537 5.08024 5.10500 5.21214 5.26242 5.27496 5.29431 5.33607 5.38154 5.57036 5.65130 5.67544 5.90002 5.98687 6.18380 6.37165 6.86351 7.15743 7.43170 7.72496 8.93485 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.003088 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.467201 B = 9064.836610 C = 9662.563552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.296 6.296 3 C -0.042 4.042 4 H 0.087 0.913 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.130 4.130 8 C 0.169 3.831 9 H 0.068 0.932 10 N -0.726 5.726 11 C 0.696 3.304 12 O -0.639 6.639 13 N -0.628 5.628 14 C 0.111 3.889 15 C -0.124 4.124 16 C -0.104 4.104 17 C 0.040 3.960 18 H -0.014 1.014 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.914 5.914 23 Si 0.957 3.043 24 H -0.275 1.275 25 H -0.288 1.288 26 H -0.262 1.262 27 C 0.145 3.855 28 C -0.094 4.094 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.089 0.911 38 H 0.402 0.598 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.259 0.741 46 H 0.030 0.970 47 H 0.074 0.926 48 H 0.098 0.902 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.677 -20.905 -4.709 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.067 6.067 3 C -0.171 4.171 4 H 0.105 0.895 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.169 4.169 8 C 0.062 3.938 9 H 0.086 0.914 10 N -0.386 5.386 11 C 0.397 3.603 12 O -0.520 6.520 13 N -0.364 5.364 14 C -0.011 4.011 15 C -0.163 4.163 16 C -0.142 4.142 17 C 0.021 3.979 18 H 0.004 0.996 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.190 4.190 22 N -0.553 5.553 23 Si 0.782 3.218 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.186 1.186 27 C 0.022 3.978 28 C -0.133 4.133 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.242 0.758 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.092 0.908 48 H 0.117 0.883 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.133 -21.500 -5.097 24.309 hybrid contribution -0.284 2.294 0.403 2.346 sum -10.417 -19.206 -4.694 22.348 Atomic orbital electron populations 1.23464 0.91658 1.07307 1.05867 1.87004 1.10262 1.11434 1.98017 1.23102 0.99286 0.93072 1.01634 0.89524 1.21816 1.01730 0.94443 0.96177 1.21443 0.94772 0.96463 1.02099 1.21924 0.97532 0.99853 0.97613 1.20763 0.96921 0.91309 0.84767 0.91432 1.45229 1.31546 1.25577 1.36278 1.16187 0.83217 0.81101 0.79775 1.90872 1.25107 1.70211 1.65844 1.47663 1.27435 1.21992 1.39283 1.21735 0.83713 0.96351 0.99318 1.21824 0.98208 0.95233 1.00991 1.21496 0.97254 0.96429 0.99035 1.18894 0.92136 0.92685 0.94191 0.99629 1.21525 1.13162 1.06429 1.16326 0.91993 1.25900 0.96731 1.01151 0.95239 1.70101 1.19918 1.40083 1.25154 0.85574 0.78619 0.79574 0.78010 1.20112 1.21383 1.18644 1.21549 1.00013 0.79907 0.96346 1.21549 0.93690 0.93435 1.04591 0.89483 0.87240 0.89715 0.90454 0.89993 0.92904 0.91007 0.94990 0.89234 0.75832 0.88687 0.90441 0.87749 0.93119 0.92501 0.92989 0.93228 0.95158 0.90772 0.88345 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.45 113.37 1.18 0.10 16 2 S -0.30 -4.51 21.79 -56.49 -1.23 -5.74 16 3 C -0.04 -0.63 2.48 30.59 0.08 -0.56 16 4 H 0.09 1.25 6.50 -2.39 -0.02 1.24 16 5 C -0.10 -1.45 5.11 30.59 0.16 -1.29 16 6 C -0.11 -2.10 5.77 30.60 0.18 -1.92 16 7 C -0.13 -3.21 5.60 30.60 0.17 -3.04 16 8 C 0.17 4.29 2.83 44.99 0.13 4.42 16 9 H 0.07 2.10 7.51 -2.39 -0.02 2.08 16 10 N -0.73 -20.80 4.15 -457.80 -1.90 -22.70 16 11 C 0.70 28.85 8.26 179.05 1.48 30.33 16 12 O -0.64 -33.73 15.41 -3.98 -0.06 -33.80 16 13 N -0.63 -25.43 2.98 -837.74 -2.49 -27.92 16 14 C 0.11 3.11 6.40 86.22 0.55 3.66 16 15 C -0.12 -3.56 6.06 30.53 0.19 -3.37 16 16 C -0.10 -3.99 5.11 30.62 0.16 -3.84 16 17 C 0.04 2.05 2.25 -11.46 -0.03 2.02 16 18 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 19 C -0.54 -29.76 8.56 25.60 0.22 -29.54 16 20 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 21 C 0.01 0.52 5.30 84.65 0.45 0.97 16 22 N -0.91 -56.39 11.39 21.45 0.24 -56.15 16 23 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 26 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 27 C 0.14 7.38 5.39 86.36 0.47 7.84 16 28 C -0.09 -1.67 4.90 30.59 0.15 -1.52 16 29 H 0.09 0.68 7.14 -2.39 -0.02 0.67 16 30 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.90 6.92 -2.38 -0.02 0.88 16 33 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.05 1.15 7.60 -2.39 -0.02 1.14 16 35 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.40 8.91 4.32 -92.71 -0.40 8.50 16 39 H 0.10 1.93 5.57 -2.39 -0.01 1.91 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 4.56 5.16 -2.39 -0.01 4.54 16 48 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -74.58 379.96 2.63 -71.94 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.52 Total: 23.29 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.52 Total: 4.28 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -4.15 Total: -106.77 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.06 Total: -33.80 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -1.23 Total: -5.74 kcal Total: -74.58 2.63 -71.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596319340.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.552 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds