Wall clock time and date at job start Tue Mar 31 2020 14:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81405 * 102.99995 * 2 1 4 4 H 1.08992 * 109.46973 * 54.99852 * 3 2 1 5 5 C 1.53002 * 109.47177 * 294.99878 * 3 2 1 6 6 C 1.52989 * 109.47129 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47181 * 60.00224 * 6 5 3 8 8 C 1.53002 * 109.46906 * 299.99912 * 7 6 5 9 9 H 1.09004 * 109.47119 * 299.99657 * 8 7 6 10 10 N 1.46496 * 109.46713 * 180.02562 * 8 7 6 11 11 C 1.34780 * 120.00133 * 85.00420 * 10 8 7 12 12 O 1.21579 * 120.00101 * 3.79215 * 11 10 8 13 13 N 1.34784 * 119.99715 * 183.80044 * 11 10 8 14 14 C 1.46920 * 120.63355 * 355.51696 * 13 11 10 15 15 C 1.53189 * 108.77434 * 126.41456 * 14 13 11 16 16 C 1.53038 * 109.31317 * 54.63814 * 15 14 13 17 17 C 1.53037 * 109.53548 * 298.63364 * 16 15 14 18 18 H 1.08996 * 109.50218 * 301.37633 * 17 16 15 19 19 C 1.50709 * 109.49764 * 181.31563 * 17 16 15 20 20 H 1.07999 * 119.99688 * 354.27169 * 19 17 16 21 21 C 1.37874 * 119.99844 * 174.27000 * 19 17 16 22 22 N 1.31516 * 119.99763 * 155.87751 * 21 19 17 23 23 Si 1.86798 * 120.00273 * 335.88077 * 21 19 17 24 24 H 1.48500 * 109.47069 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47205 * 60.00229 * 23 21 19 26 26 H 1.48499 * 109.47184 * 299.99901 * 23 21 19 27 27 C 1.46927 * 120.62614 * 175.54523 * 13 11 10 28 28 C 1.52995 * 109.46833 * 59.99956 * 8 7 6 29 29 H 1.08994 * 109.46647 * 300.00169 * 1 2 3 30 30 H 1.09002 * 109.46642 * 60.00312 * 1 2 3 31 31 H 1.09000 * 109.46648 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46676 * 59.99877 * 5 3 2 33 33 H 1.09004 * 109.47119 * 300.00282 * 5 3 2 34 34 H 1.09004 * 109.47447 * 300.00199 * 6 5 3 35 35 H 1.09008 * 109.47048 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.47271 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.46783 * 59.99906 * 7 6 5 38 38 H 0.97002 * 120.00046 * 264.99803 * 10 8 7 39 39 H 1.09002 * 109.58897 * 6.62693 * 14 13 11 40 40 H 1.09001 * 109.58906 * 246.20261 * 14 13 11 41 41 H 1.08998 * 109.49915 * 294.68414 * 15 14 13 42 42 H 1.09004 * 109.52567 * 174.60211 * 15 14 13 43 43 H 1.08997 * 109.46438 * 178.60826 * 16 15 14 44 44 H 1.09002 * 109.45765 * 58.65279 * 16 15 14 45 45 H 0.97005 * 119.99803 * 354.96147 * 22 21 19 46 46 H 1.09002 * 109.58586 * 113.79708 * 27 13 11 47 47 H 1.08997 * 109.58824 * 353.36855 * 27 13 11 48 48 H 1.09001 * 109.47267 * 60.00394 * 28 8 7 49 49 H 1.09008 * 109.46752 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7295 2.2541 0.8417 5 6 1.7429 2.4016 -1.3074 6 6 2.0864 3.8924 -1.3071 7 6 3.6013 4.0667 -1.1811 8 6 4.0805 3.4326 0.1263 9 1 3.5876 3.9190 0.9681 10 7 5.5309 3.6000 0.2472 11 6 6.0373 4.7372 0.7638 12 8 5.2905 5.5953 1.1929 13 7 7.3716 4.9232 0.8045 14 6 8.2893 3.8570 0.3807 15 6 9.2452 4.4203 -0.6756 16 6 9.9412 5.6634 -0.1169 17 6 8.8958 6.7328 0.2078 18 1 8.3364 6.9806 -0.6943 19 6 9.5848 7.9683 0.7276 20 1 10.6500 7.9583 0.9050 21 6 8.8551 9.1114 0.9764 22 7 9.2993 10.0006 1.8376 23 14 7.2356 9.3971 0.0904 24 1 6.6514 10.6892 0.5313 25 1 6.2946 8.2940 0.4111 26 1 7.4730 9.4351 -1.3750 27 6 7.9360 6.1958 1.2742 28 6 3.7369 1.9418 0.1259 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 0.6636 2.2779 -1.3969 33 1 2.2355 1.9150 -2.1492 34 1 1.5935 4.3788 -0.4653 35 1 1.7454 4.3441 -2.2387 36 1 3.8461 5.1289 -1.1804 37 1 4.0941 3.5804 -2.0229 38 1 6.1268 2.8924 -0.0445 39 1 7.7189 3.0318 -0.0456 40 1 8.8606 3.5039 1.2393 41 1 8.6821 4.6893 -1.5693 42 1 9.9922 3.6680 -0.9290 43 1 10.6403 6.0519 -0.8575 44 1 10.4839 5.3987 0.7906 45 1 10.1018 9.8192 2.3515 46 1 8.4784 6.0334 2.2056 47 1 7.1323 6.9139 1.4373 48 1 4.2299 1.4554 -0.7158 49 1 4.0779 1.4901 1.0576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596319342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:27 Heat of formation + Delta-G solvation = -51.100283 kcal Electronic energy + Delta-G solvation = -26730.204151 eV Core-core repulsion = 23203.316507 eV Total energy + Delta-G solvation = -3526.887643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.22936 -38.62734 -36.85886 -34.23765 -33.27000 -31.90509 -31.14835 -30.43047 -29.69132 -28.75883 -24.96407 -24.56272 -23.09053 -22.41156 -21.82347 -20.36691 -19.91590 -18.82102 -17.82812 -17.43419 -16.92179 -15.84682 -15.46138 -15.04753 -14.79667 -14.55192 -14.27596 -14.11023 -13.93800 -13.84519 -13.77383 -13.45734 -13.25470 -13.18390 -12.79744 -12.75057 -12.44378 -12.23503 -11.86532 -11.76298 -11.54779 -11.40526 -11.05337 -10.90010 -10.87846 -10.71790 -10.43985 -10.28186 -10.20017 -10.05112 -9.69657 -9.65121 -9.45648 -8.98228 -8.89814 -8.14734 -8.04624 -7.91191 -6.45281 -4.06711 1.29329 2.20254 2.99078 3.51028 3.60902 3.61875 3.72429 4.10534 4.28328 4.45943 4.57147 4.64155 4.73293 4.77321 4.83264 4.88801 5.04911 5.09404 5.13327 5.19957 5.22920 5.27600 5.34956 5.35761 5.46579 5.58885 5.68717 5.69592 5.80888 5.84657 5.91877 6.00880 6.10918 6.13711 6.19142 6.30216 6.43902 6.63370 6.67258 6.72200 6.80244 6.97861 7.20183 7.44669 7.48519 8.15227 8.35194 8.38894 8.90879 9.01761 9.59157 10.90706 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.002977 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.844605 B = 9403.872976 C =10191.969805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.266 6.266 3 C -0.045 4.045 4 H 0.091 0.909 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.133 4.133 8 C 0.171 3.829 9 H 0.089 0.911 10 N -0.750 5.750 11 C 0.702 3.298 12 O -0.589 6.589 13 N -0.625 5.625 14 C 0.117 3.883 15 C -0.136 4.136 16 C -0.100 4.100 17 C 0.014 3.986 18 H 0.022 0.978 19 C -0.608 4.608 20 H 0.058 0.942 21 C 0.042 3.958 22 N -0.894 5.894 23 Si 1.023 2.977 24 H -0.286 1.286 25 H -0.262 1.262 26 H -0.286 1.286 27 C 0.124 3.876 28 C -0.105 4.105 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.392 0.608 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.269 0.731 46 H 0.055 0.945 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.549 -21.327 -6.547 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.037 6.037 3 C -0.174 4.174 4 H 0.109 0.891 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.172 4.172 8 C 0.064 3.936 9 H 0.107 0.893 10 N -0.408 5.408 11 C 0.404 3.596 12 O -0.467 6.467 13 N -0.362 5.362 14 C -0.007 4.007 15 C -0.174 4.174 16 C -0.138 4.138 17 C -0.006 4.006 18 H 0.040 0.960 19 C -0.646 4.646 20 H 0.077 0.923 21 C -0.165 4.165 22 N -0.526 5.526 23 Si 0.851 3.149 24 H -0.212 1.212 25 H -0.187 1.187 26 H -0.212 1.212 27 C 0.003 3.997 28 C -0.145 4.145 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.106 0.894 48 H 0.095 0.905 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.642 -20.490 -6.371 26.553 hybrid contribution 0.793 -0.510 0.034 0.944 sum -14.848 -21.000 -6.336 26.488 Atomic orbital electron populations 1.23389 0.94197 1.06366 1.05012 1.86871 1.07399 1.11470 1.97950 1.23107 0.99562 0.93110 1.01613 0.89106 1.21899 1.00832 0.96260 0.96324 1.21510 0.96174 0.95117 1.02533 1.21999 0.95276 1.02346 0.97581 1.20642 0.80430 0.93891 0.98684 0.89263 1.45346 1.06981 1.19179 1.69302 1.15941 0.82651 0.82197 0.78818 1.90902 1.57924 1.44063 1.53823 1.47748 1.03013 1.17270 1.68123 1.21521 0.92140 0.89313 0.97765 1.21993 0.98286 0.98994 0.98169 1.21450 0.98452 0.94130 0.99770 1.19280 0.92937 0.94304 0.94055 0.95982 1.21830 0.95857 0.96746 1.50165 0.92336 1.25723 1.03057 0.92959 0.94754 1.70865 1.23368 1.38756 1.19595 0.84308 0.76875 0.77212 0.76545 1.21169 1.18747 1.21199 1.22503 0.97482 0.81645 0.98041 1.21582 0.92871 0.96307 1.03693 0.90484 0.90385 0.88207 0.91861 0.90555 0.91534 0.91199 0.90741 0.91726 0.77189 0.91798 0.91809 0.92080 0.91955 0.92653 0.92935 0.92064 0.92616 0.89428 0.90524 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.45 101.05 1.06 0.35 16 2 S -0.27 -2.27 21.79 -107.50 -2.34 -4.61 16 3 C -0.04 -0.37 2.65 -26.73 -0.07 -0.44 16 4 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.11 -0.85 5.11 -26.74 -0.14 -0.99 16 6 C -0.11 -1.00 5.92 -26.74 -0.16 -1.15 16 7 C -0.13 -1.49 5.49 -26.73 -0.15 -1.64 16 8 C 0.17 2.00 2.49 -67.93 -0.17 1.83 16 9 H 0.09 1.24 7.52 -51.93 -0.39 0.85 16 10 N -0.75 -10.13 4.99 -58.68 -0.29 -10.42 16 11 C 0.70 13.16 8.27 -86.91 -0.72 12.44 16 12 O -0.59 -13.56 15.41 5.30 0.08 -13.48 16 13 N -0.63 -11.67 2.97 -178.50 -0.53 -12.20 16 14 C 0.12 1.65 6.43 -3.72 -0.02 1.62 16 15 C -0.14 -2.02 6.08 -26.61 -0.16 -2.18 16 16 C -0.10 -1.93 5.11 -26.69 -0.14 -2.06 16 17 C 0.01 0.33 1.85 -91.65 -0.17 0.16 16 18 H 0.02 0.54 6.70 -51.93 -0.35 0.20 16 19 C -0.61 -16.89 8.76 -34.44 -0.30 -17.20 16 20 H 0.06 1.73 7.99 -52.49 -0.42 1.31 16 21 C 0.04 1.23 5.28 -17.82 -0.09 1.13 16 22 N -0.89 -27.47 13.70 55.43 0.76 -26.71 16 23 Si 1.02 26.25 26.61 -169.99 -4.52 21.73 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.26 -6.73 5.93 56.52 0.33 -6.40 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.12 2.84 5.40 -3.71 -0.02 2.82 16 28 C -0.11 -0.95 4.68 -26.74 -0.13 -1.07 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.40 7.14 -51.92 -0.37 0.03 16 31 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.06 0.41 6.92 -51.93 -0.36 0.05 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.39 4.25 6.06 -40.82 -0.25 4.00 16 39 H 0.06 0.69 5.56 -51.93 -0.29 0.40 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.09 2.27 4.43 -51.93 -0.23 2.04 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -32.83 380.91 -11.12 -43.95 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.64 Total: 2.37 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.38 Total: -6.37 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.06 Total: -49.33 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -4.52 Total: 21.73 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.34 Total: -4.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.83 -11.12 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596319342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.147 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds