Wall clock time and date at job start Tue Mar 31 2020 14:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81405 * 102.99995 * 2 1 4 4 H 1.08992 * 109.46973 * 54.99852 * 3 2 1 5 5 C 1.53002 * 109.47177 * 294.99878 * 3 2 1 6 6 C 1.52989 * 109.47129 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47181 * 60.00224 * 6 5 3 8 8 C 1.53002 * 109.46906 * 299.99912 * 7 6 5 9 9 H 1.09004 * 109.47119 * 299.99657 * 8 7 6 10 10 N 1.46496 * 109.46713 * 180.02562 * 8 7 6 11 11 C 1.34780 * 120.00133 * 85.00420 * 10 8 7 12 12 O 1.21579 * 120.00101 * 3.79215 * 11 10 8 13 13 N 1.34784 * 119.99715 * 183.80044 * 11 10 8 14 14 C 1.46920 * 120.63355 * 355.51696 * 13 11 10 15 15 C 1.53189 * 108.77434 * 126.41456 * 14 13 11 16 16 C 1.53038 * 109.31317 * 54.63814 * 15 14 13 17 17 C 1.53037 * 109.53548 * 298.63364 * 16 15 14 18 18 H 1.08996 * 109.50218 * 301.37633 * 17 16 15 19 19 C 1.50709 * 109.49764 * 181.31563 * 17 16 15 20 20 H 1.07999 * 119.99688 * 354.27169 * 19 17 16 21 21 C 1.37874 * 119.99844 * 174.27000 * 19 17 16 22 22 N 1.31516 * 119.99763 * 155.87751 * 21 19 17 23 23 Si 1.86798 * 120.00273 * 335.88077 * 21 19 17 24 24 H 1.48500 * 109.47069 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47205 * 60.00229 * 23 21 19 26 26 H 1.48499 * 109.47184 * 299.99901 * 23 21 19 27 27 C 1.46927 * 120.62614 * 175.54523 * 13 11 10 28 28 C 1.52995 * 109.46833 * 59.99956 * 8 7 6 29 29 H 1.08994 * 109.46647 * 300.00169 * 1 2 3 30 30 H 1.09002 * 109.46642 * 60.00312 * 1 2 3 31 31 H 1.09000 * 109.46648 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46676 * 59.99877 * 5 3 2 33 33 H 1.09004 * 109.47119 * 300.00282 * 5 3 2 34 34 H 1.09004 * 109.47447 * 300.00199 * 6 5 3 35 35 H 1.09008 * 109.47048 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.47271 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.46783 * 59.99906 * 7 6 5 38 38 H 0.97002 * 120.00046 * 264.99803 * 10 8 7 39 39 H 1.09002 * 109.58897 * 6.62693 * 14 13 11 40 40 H 1.09001 * 109.58906 * 246.20261 * 14 13 11 41 41 H 1.08998 * 109.49915 * 294.68414 * 15 14 13 42 42 H 1.09004 * 109.52567 * 174.60211 * 15 14 13 43 43 H 1.08997 * 109.46438 * 178.60826 * 16 15 14 44 44 H 1.09002 * 109.45765 * 58.65279 * 16 15 14 45 45 H 0.97005 * 119.99803 * 354.96147 * 22 21 19 46 46 H 1.09002 * 109.58586 * 113.79708 * 27 13 11 47 47 H 1.08997 * 109.58824 * 353.36855 * 27 13 11 48 48 H 1.09001 * 109.47267 * 60.00394 * 28 8 7 49 49 H 1.09008 * 109.46752 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7295 2.2541 0.8417 5 6 1.7429 2.4016 -1.3074 6 6 2.0864 3.8924 -1.3071 7 6 3.6013 4.0667 -1.1811 8 6 4.0805 3.4326 0.1263 9 1 3.5876 3.9190 0.9681 10 7 5.5309 3.6000 0.2472 11 6 6.0373 4.7372 0.7638 12 8 5.2905 5.5953 1.1929 13 7 7.3716 4.9232 0.8045 14 6 8.2893 3.8570 0.3807 15 6 9.2452 4.4203 -0.6756 16 6 9.9412 5.6634 -0.1169 17 6 8.8958 6.7328 0.2078 18 1 8.3364 6.9806 -0.6943 19 6 9.5848 7.9683 0.7276 20 1 10.6500 7.9583 0.9050 21 6 8.8551 9.1114 0.9764 22 7 9.2993 10.0006 1.8376 23 14 7.2356 9.3971 0.0904 24 1 6.6514 10.6892 0.5313 25 1 6.2946 8.2940 0.4111 26 1 7.4730 9.4351 -1.3750 27 6 7.9360 6.1958 1.2742 28 6 3.7369 1.9418 0.1259 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 0.6636 2.2779 -1.3969 33 1 2.2355 1.9150 -2.1492 34 1 1.5935 4.3788 -0.4653 35 1 1.7454 4.3441 -2.2387 36 1 3.8461 5.1289 -1.1804 37 1 4.0941 3.5804 -2.0229 38 1 6.1268 2.8924 -0.0445 39 1 7.7189 3.0318 -0.0456 40 1 8.8606 3.5039 1.2393 41 1 8.6821 4.6893 -1.5693 42 1 9.9922 3.6680 -0.9290 43 1 10.6403 6.0519 -0.8575 44 1 10.4839 5.3987 0.7906 45 1 10.1018 9.8192 2.3515 46 1 8.4784 6.0334 2.2056 47 1 7.1323 6.9139 1.4373 48 1 4.2299 1.4554 -0.7158 49 1 4.0779 1.4901 1.0576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596319342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:26 Heat of formation + Delta-G solvation = -71.159846 kcal Electronic energy + Delta-G solvation = -26731.073999 eV Core-core repulsion = 23203.316507 eV Total energy + Delta-G solvation = -3527.757491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57246 -39.66663 -38.32110 -35.66203 -35.01668 -33.53237 -32.04918 -31.89624 -30.54827 -29.42225 -26.70088 -26.16666 -23.87316 -23.37608 -23.36675 -21.48873 -21.20210 -20.28823 -19.75310 -18.99922 -17.86599 -16.94474 -16.42127 -16.29138 -16.00529 -15.54130 -15.49318 -15.33873 -15.28864 -15.23867 -14.98622 -14.50487 -14.34991 -14.24698 -14.04876 -13.78780 -13.64642 -13.49888 -13.18860 -12.91590 -12.74719 -12.57798 -12.30875 -12.20467 -12.01574 -11.88022 -11.73743 -11.64467 -11.56691 -11.54992 -11.36315 -11.15476 -10.95859 -10.72089 -10.41622 -10.15246 -9.40355 -8.76342 -8.66814 -6.37684 0.69584 1.40014 1.50504 1.64419 1.64928 1.68297 2.16395 2.42122 2.89928 2.99257 3.60595 3.72422 3.80824 3.97258 4.07495 4.08516 4.11926 4.13324 4.31351 4.35052 4.36824 4.38577 4.39798 4.45825 4.57697 4.58621 4.66198 4.72609 4.84176 4.88765 4.94807 4.97142 4.99321 5.00500 5.06238 5.16192 5.18474 5.19371 5.25644 5.37321 5.44404 5.54478 5.57878 5.62955 6.01371 6.04290 6.13237 6.59513 7.03947 7.34010 7.59147 8.58098 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.002977 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.844605 B = 9403.872976 C =10191.969805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.297 6.297 3 C -0.040 4.040 4 H 0.086 0.914 5 C -0.105 4.105 6 C -0.109 4.109 7 C -0.129 4.129 8 C 0.170 3.830 9 H 0.063 0.937 10 N -0.728 5.728 11 C 0.697 3.303 12 O -0.639 6.639 13 N -0.629 5.629 14 C 0.110 3.890 15 C -0.126 4.126 16 C -0.099 4.099 17 C 0.013 3.987 18 H 0.014 0.986 19 C -0.605 4.605 20 H 0.031 0.969 21 C -0.003 4.003 22 N -0.927 5.927 23 Si 1.065 2.935 24 H -0.288 1.288 25 H -0.267 1.267 26 H -0.263 1.263 27 C 0.138 3.862 28 C -0.093 4.093 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.409 0.591 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.259 0.741 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.091 0.909 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 -24.962 -8.659 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.068 6.068 3 C -0.169 4.169 4 H 0.104 0.896 5 C -0.144 4.144 6 C -0.149 4.149 7 C -0.168 4.168 8 C 0.064 3.936 9 H 0.081 0.919 10 N -0.386 5.386 11 C 0.399 3.601 12 O -0.521 6.521 13 N -0.365 5.365 14 C -0.011 4.011 15 C -0.164 4.164 16 C -0.137 4.137 17 C -0.007 4.007 18 H 0.032 0.968 19 C -0.643 4.643 20 H 0.050 0.950 21 C -0.204 4.204 22 N -0.562 5.562 23 Si 0.888 3.112 24 H -0.214 1.214 25 H -0.193 1.193 26 H -0.188 1.188 27 C 0.014 3.986 28 C -0.132 4.132 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.248 0.752 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.109 0.891 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.909 -24.203 -8.524 30.730 hybrid contribution 1.215 0.557 0.729 1.523 sum -15.694 -23.645 -7.795 29.431 Atomic orbital electron populations 1.23461 0.91606 1.07345 1.05809 1.86962 1.10341 1.11451 1.98038 1.23031 0.98820 0.93096 1.01953 0.89577 1.21844 1.01845 0.94761 0.95973 1.21474 0.94208 0.96409 1.02785 1.21940 0.97276 0.99972 0.97613 1.20745 0.78954 0.95864 0.98079 0.91921 1.45153 1.08085 1.17733 1.67650 1.16138 0.82291 0.82923 0.78758 1.90870 1.59164 1.46161 1.55914 1.47610 1.03811 1.16853 1.68206 1.21889 0.91979 0.88853 0.98420 1.21934 0.98974 0.97641 0.97830 1.21378 0.97369 0.95004 0.99914 1.19229 0.93902 0.94096 0.93475 0.96781 1.22089 0.94745 0.98621 1.48845 0.95031 1.26750 1.05438 0.93270 0.94930 1.70948 1.23835 1.39947 1.21432 0.83734 0.73912 0.76626 0.76891 1.21426 1.19271 1.18847 1.21881 0.96016 0.83295 0.97378 1.21466 0.93771 0.93734 1.04265 0.90026 0.89267 0.87155 0.90369 0.89952 0.92325 0.90129 0.94442 0.90243 0.75187 0.87537 0.90445 0.92034 0.87726 0.93016 0.93208 0.93167 0.93695 0.93013 0.89063 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.45 113.37 1.19 0.18 16 2 S -0.30 -4.31 21.79 -56.49 -1.23 -5.55 16 3 C -0.04 -0.56 2.65 30.59 0.08 -0.48 16 4 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.11 -1.27 5.11 30.59 0.16 -1.12 16 6 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 7 C -0.13 -2.73 5.49 30.60 0.17 -2.56 16 8 C 0.17 3.78 2.49 44.99 0.11 3.90 16 9 H 0.06 1.76 7.52 -2.38 -0.02 1.74 16 10 N -0.73 -18.23 4.99 -457.82 -2.29 -20.52 16 11 C 0.70 25.76 8.27 179.05 1.48 27.24 16 12 O -0.64 -30.26 15.41 -3.97 -0.06 -30.33 16 13 N -0.63 -22.77 2.97 -836.92 -2.49 -25.26 16 14 C 0.11 2.72 6.43 86.36 0.56 3.27 16 15 C -0.13 -3.24 6.08 30.67 0.19 -3.06 16 16 C -0.10 -3.65 5.11 30.62 0.16 -3.50 16 17 C 0.01 0.61 1.85 -11.46 -0.02 0.59 16 18 H 0.01 0.69 6.70 -2.39 -0.02 0.68 16 19 C -0.61 -34.62 8.76 25.60 0.22 -34.39 16 20 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 21 C 0.00 -0.15 5.28 84.65 0.45 0.29 16 22 N -0.93 -59.19 13.70 21.45 0.29 -58.89 16 23 Si 1.06 54.93 26.61 68.60 1.83 56.76 16 24 H -0.29 -14.88 7.11 99.48 0.71 -14.18 16 25 H -0.27 -14.02 5.93 99.48 0.59 -13.43 16 26 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 27 C 0.14 6.38 5.40 86.36 0.47 6.85 16 28 C -0.09 -1.45 4.68 30.59 0.14 -1.31 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.61 7.14 -2.39 -0.02 0.59 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.76 6.92 -2.39 -0.02 0.74 16 33 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.41 7.31 6.06 -92.71 -0.56 6.75 16 39 H 0.11 1.73 5.56 -2.39 -0.01 1.72 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 42 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.26 16.50 8.73 -92.70 -0.81 15.70 16 46 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 2.77 4.43 -2.39 -0.01 2.76 16 48 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -76.33 380.91 1.78 -74.54 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.21 Total: 14.89 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.52 Total: -5.65 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -4.48 Total: -104.67 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.06 Total: -30.33 kcal Atomic # 14 Polarization: 54.93 SS G_CDS: 1.83 Total: 56.76 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -1.23 Total: -5.55 kcal Total: -76.33 1.78 -74.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596319342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.382 kcal (2) G-P(sol) polarization free energy of solvation -76.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds