Wall clock time and date at job start Tue Mar 31 2020 14:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 103.00091 * 2 1 4 4 H 1.09004 * 109.47201 * 54.99080 * 3 2 1 5 5 C 1.53003 * 109.46793 * 295.00023 * 3 2 1 6 6 C 1.53002 * 109.47021 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.47298 * 59.99589 * 6 5 3 8 8 C 1.53003 * 109.47421 * 300.00166 * 7 6 5 9 9 H 1.09007 * 109.46974 * 300.00278 * 8 7 6 10 10 N 1.46503 * 109.47495 * 180.02562 * 8 7 6 11 11 C 1.34777 * 120.00087 * 84.99543 * 10 8 7 12 12 O 1.21584 * 120.00086 * 354.91499 * 11 10 8 13 13 N 1.34770 * 119.99693 * 174.90264 * 11 10 8 14 14 C 1.46923 * 120.63262 * 4.75892 * 13 11 10 15 15 C 1.52754 * 109.00989 * 233.57719 * 14 13 11 16 16 C 1.53040 * 109.38437 * 305.58711 * 15 14 13 17 17 C 1.53044 * 109.53827 * 61.24192 * 16 15 14 18 18 H 1.09004 * 109.49695 * 58.57917 * 17 16 15 19 19 C 1.50693 * 109.52666 * 178.66802 * 17 16 15 20 20 H 1.07998 * 120.00080 * 5.25134 * 19 17 16 21 21 C 1.37881 * 119.99978 * 185.25546 * 19 17 16 22 22 N 1.31509 * 119.99927 * 355.12196 * 21 19 17 23 23 Si 1.86796 * 119.99963 * 175.12219 * 21 19 17 24 24 H 1.48501 * 109.47376 * 94.99963 * 23 21 19 25 25 H 1.48497 * 109.47164 * 214.99831 * 23 21 19 26 26 H 1.48498 * 109.47297 * 334.99684 * 23 21 19 27 27 C 1.46931 * 120.62821 * 185.02968 * 13 11 10 28 28 C 1.52993 * 109.47322 * 174.99736 * 3 2 1 29 29 H 1.09003 * 109.47260 * 60.00471 * 1 2 3 30 30 H 1.09006 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47457 * 300.00152 * 1 2 3 32 32 H 1.08999 * 109.47124 * 299.99779 * 5 3 2 33 33 H 1.08996 * 109.47460 * 59.99753 * 5 3 2 34 34 H 1.08999 * 109.47354 * 179.97438 * 6 5 3 35 35 H 1.09007 * 109.46745 * 299.99526 * 6 5 3 36 36 H 1.09001 * 109.47153 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.46967 * 60.00257 * 7 6 5 38 38 H 0.96999 * 119.99659 * 264.99880 * 10 8 7 39 39 H 1.08996 * 109.58790 * 353.41925 * 14 13 11 40 40 H 1.09009 * 109.58612 * 113.84123 * 14 13 11 41 41 H 1.09001 * 109.56676 * 185.55414 * 15 14 13 42 42 H 1.08997 * 109.35839 * 65.49900 * 15 14 13 43 43 H 1.08991 * 109.46257 * 301.22110 * 16 15 14 44 44 H 1.09007 * 109.46328 * 181.25595 * 16 15 14 45 45 H 0.97006 * 120.00113 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58815 * 246.15993 * 27 13 11 47 47 H 1.08998 * 109.58542 * 6.59053 * 27 13 11 48 48 H 1.08999 * 109.47303 * 299.99596 * 28 3 2 49 49 H 1.08999 * 109.46967 * 59.99993 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7293 2.2542 0.8417 5 6 1.7427 2.4015 -1.3074 6 6 2.0875 3.8922 -1.3077 7 6 3.6024 4.0653 -1.1822 8 6 4.0817 3.4313 0.1252 9 1 3.5893 3.9183 0.9670 10 7 5.5323 3.5977 0.2456 11 6 6.0396 4.7347 0.7616 12 8 5.3002 5.6584 1.0412 13 7 7.3667 4.8476 0.9679 14 6 8.2840 3.7827 0.5401 15 6 9.1420 3.3573 1.7302 16 6 9.8370 4.5864 2.3205 17 6 8.7844 5.5822 2.8131 18 1 8.1524 5.1032 3.5611 19 6 9.4690 6.7777 3.4239 20 1 10.5447 6.8637 3.3822 21 6 8.7219 7.7616 4.0362 22 7 7.4084 7.7060 4.0037 23 14 9.5756 9.1736 4.9118 24 1 9.6914 10.3310 3.9886 25 1 8.7827 9.5687 6.1037 26 1 10.9312 8.7439 5.3394 27 6 7.9229 6.0354 1.6302 28 6 3.7369 1.9412 0.1258 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2353 1.9149 -2.1492 33 1 0.6635 2.2778 -1.3970 34 1 1.7464 4.3438 -2.2393 35 1 1.5951 4.3791 -0.4659 36 1 3.8479 5.1273 -1.1820 37 1 4.0947 3.5784 -2.0240 38 1 6.1275 2.8895 -0.0460 39 1 7.7102 2.9284 0.1811 40 1 8.9282 4.1537 -0.2572 41 1 9.8923 2.6383 1.4009 42 1 8.5067 2.8994 2.4883 43 1 10.4528 5.0581 1.5548 44 1 10.4671 4.2811 3.1559 45 1 6.8828 8.3984 4.4341 46 1 8.5370 6.5938 0.9237 47 1 7.1107 6.6668 1.9904 48 1 4.0783 1.4896 1.0572 49 1 4.2295 1.4546 -0.7160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596319343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:30 Heat of formation + Delta-G solvation = -50.745030 kcal Electronic energy + Delta-G solvation = -26568.687291 eV Core-core repulsion = 23041.815053 eV Total energy + Delta-G solvation = -3526.872238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00512 -38.45911 -36.63302 -34.03888 -33.16574 -31.72240 -31.04991 -29.99902 -29.49445 -28.64017 -25.04474 -24.48322 -22.98796 -22.36304 -21.77419 -20.24660 -19.98956 -18.69415 -17.55753 -16.87392 -16.16103 -15.66936 -15.32995 -14.88071 -14.68106 -14.59729 -14.31244 -14.00509 -13.83217 -13.73759 -13.69544 -13.44746 -13.17716 -12.70688 -12.61409 -12.53663 -12.26505 -12.03957 -11.91388 -11.74075 -11.41451 -11.02113 -10.97025 -10.83839 -10.79234 -10.63224 -10.50090 -10.35589 -10.22708 -9.96512 -9.83384 -9.40468 -9.05827 -8.89751 -8.70416 -8.43496 -7.96452 -7.61266 -5.97099 -4.05107 1.37772 2.28521 3.20819 3.33140 3.40158 3.42940 3.87292 4.30411 4.37608 4.46087 4.58674 4.75130 4.80551 4.85247 4.92351 4.98737 5.15625 5.19507 5.28911 5.30752 5.33421 5.36037 5.45245 5.52899 5.64523 5.68396 5.77083 5.78496 5.92677 6.00530 6.01412 6.17456 6.22928 6.29786 6.34258 6.62253 6.68520 6.83637 6.88340 7.01017 7.09046 7.36719 7.54266 7.76396 7.94977 8.07434 8.43438 8.62263 8.99177 9.29013 9.60320 11.08624 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.002686 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.624361 B =10420.716168 C =10901.806865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.266 6.266 3 C -0.045 4.045 4 H 0.091 0.909 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.131 4.131 8 C 0.173 3.827 9 H 0.087 0.913 10 N -0.753 5.753 11 C 0.702 3.298 12 O -0.583 6.583 13 N -0.623 5.623 14 C 0.116 3.884 15 C -0.134 4.134 16 C -0.110 4.110 17 C 0.039 3.961 18 H 0.030 0.970 19 C -0.521 4.521 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.131 3.869 28 C -0.106 4.106 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.390 0.610 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.263 0.737 46 H 0.039 0.961 47 H 0.118 0.882 48 H 0.079 0.921 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 -15.050 -11.907 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.037 6.037 3 C -0.174 4.174 4 H 0.109 0.891 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.170 4.170 8 C 0.066 3.934 9 H 0.105 0.895 10 N -0.411 5.411 11 C 0.404 3.596 12 O -0.461 6.461 13 N -0.359 5.359 14 C -0.008 4.008 15 C -0.172 4.172 16 C -0.148 4.148 17 C 0.020 3.980 18 H 0.048 0.952 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.011 3.989 28 C -0.145 4.145 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.226 0.774 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.136 0.864 48 H 0.097 0.903 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.794 -15.169 -11.579 21.924 hybrid contribution -0.123 1.346 0.359 1.399 sum -10.917 -13.823 -11.219 20.884 Atomic orbital electron populations 1.23385 0.94306 1.06313 1.04983 1.86868 1.07282 1.11613 1.97947 1.23111 0.99678 0.93001 1.01580 0.89077 1.21894 1.00733 0.96302 0.96328 1.21514 0.96375 0.95074 1.02403 1.21982 0.95052 1.02417 0.97564 1.20584 0.80657 0.93656 0.98519 0.89490 1.45364 1.06733 1.19209 1.69810 1.15932 0.82733 0.82556 0.78409 1.90910 1.58095 1.38848 1.58222 1.47795 1.03593 1.22335 1.62193 1.21394 0.92544 0.89912 0.96952 1.21875 0.98704 0.98967 0.97681 1.21617 0.98907 0.95031 0.99202 1.19002 0.92317 0.93682 0.92986 0.95166 1.21066 0.93152 1.05272 1.36503 0.92411 1.25056 0.94838 0.98054 0.96052 1.69926 1.04244 1.34177 1.43184 0.86600 0.79547 0.82559 0.79419 1.20746 1.21198 1.19904 1.22185 0.99456 0.84384 0.92923 1.21581 0.92727 0.96508 1.03693 0.90441 0.88253 0.90480 0.90641 0.91942 0.91363 0.91529 0.90624 0.91972 0.77428 0.92165 0.92220 0.92337 0.92204 0.93263 0.93039 0.92731 0.94307 0.86419 0.90275 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.45 101.05 1.06 0.26 16 2 S -0.27 -2.50 21.79 -107.50 -2.34 -4.84 16 3 C -0.04 -0.41 2.65 -26.73 -0.07 -0.48 16 4 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 5 C -0.11 -0.92 5.11 -26.73 -0.14 -1.06 16 6 C -0.11 -1.06 5.92 -26.73 -0.16 -1.22 16 7 C -0.13 -1.54 5.49 -26.73 -0.15 -1.68 16 8 C 0.17 2.23 2.41 -67.95 -0.16 2.07 16 9 H 0.09 1.35 7.65 -51.93 -0.40 0.95 16 10 N -0.75 -11.14 4.99 -58.70 -0.29 -11.43 16 11 C 0.70 14.22 8.26 -86.92 -0.72 13.51 16 12 O -0.58 -14.43 15.44 5.29 0.08 -14.35 16 13 N -0.62 -12.54 2.98 -178.76 -0.53 -13.07 16 14 C 0.12 1.79 6.40 -3.94 -0.03 1.77 16 15 C -0.13 -2.14 6.06 -26.84 -0.16 -2.31 16 16 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 17 C 0.04 0.98 2.19 -91.65 -0.20 0.78 16 18 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.52 -14.18 8.49 -34.44 -0.29 -14.47 16 20 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 21 C 0.06 1.76 5.36 -17.82 -0.10 1.66 16 22 N -0.88 -25.83 11.61 55.43 0.64 -25.18 16 23 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.13 3.21 5.46 -3.70 -0.02 3.19 16 28 C -0.11 -1.08 4.68 -26.76 -0.13 -1.20 16 29 H 0.08 0.44 7.14 -51.92 -0.37 0.07 16 30 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.45 6.92 -51.93 -0.36 0.09 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.39 4.74 6.06 -40.82 -0.25 4.49 16 39 H 0.06 0.73 5.57 -51.93 -0.29 0.44 16 40 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.12 3.38 5.38 -51.93 -0.28 3.10 16 48 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -31.68 384.89 -11.73 -43.41 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.67 Total: 4.83 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.40 Total: -1.52 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.18 Total: -49.69 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.34 Total: -4.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.68 -11.73 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596319343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.336 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds