Wall clock time and date at job start Tue Mar 31 2020 14:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 103.00091 * 2 1 4 4 H 1.09004 * 109.47201 * 54.99080 * 3 2 1 5 5 C 1.53003 * 109.46793 * 295.00023 * 3 2 1 6 6 C 1.53002 * 109.47021 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.47298 * 59.99589 * 6 5 3 8 8 C 1.53003 * 109.47421 * 300.00166 * 7 6 5 9 9 H 1.09007 * 109.46974 * 300.00278 * 8 7 6 10 10 N 1.46503 * 109.47495 * 180.02562 * 8 7 6 11 11 C 1.34777 * 120.00087 * 84.99543 * 10 8 7 12 12 O 1.21584 * 120.00086 * 354.91499 * 11 10 8 13 13 N 1.34770 * 119.99693 * 174.90264 * 11 10 8 14 14 C 1.46923 * 120.63262 * 4.75892 * 13 11 10 15 15 C 1.52754 * 109.00989 * 233.57719 * 14 13 11 16 16 C 1.53040 * 109.38437 * 305.58711 * 15 14 13 17 17 C 1.53044 * 109.53827 * 61.24192 * 16 15 14 18 18 H 1.09004 * 109.49695 * 58.57917 * 17 16 15 19 19 C 1.50693 * 109.52666 * 178.66802 * 17 16 15 20 20 H 1.07998 * 120.00080 * 5.25134 * 19 17 16 21 21 C 1.37881 * 119.99978 * 185.25546 * 19 17 16 22 22 N 1.31509 * 119.99927 * 355.12196 * 21 19 17 23 23 Si 1.86796 * 119.99963 * 175.12219 * 21 19 17 24 24 H 1.48501 * 109.47376 * 94.99963 * 23 21 19 25 25 H 1.48497 * 109.47164 * 214.99831 * 23 21 19 26 26 H 1.48498 * 109.47297 * 334.99684 * 23 21 19 27 27 C 1.46931 * 120.62821 * 185.02968 * 13 11 10 28 28 C 1.52993 * 109.47322 * 174.99736 * 3 2 1 29 29 H 1.09003 * 109.47260 * 60.00471 * 1 2 3 30 30 H 1.09006 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47457 * 300.00152 * 1 2 3 32 32 H 1.08999 * 109.47124 * 299.99779 * 5 3 2 33 33 H 1.08996 * 109.47460 * 59.99753 * 5 3 2 34 34 H 1.08999 * 109.47354 * 179.97438 * 6 5 3 35 35 H 1.09007 * 109.46745 * 299.99526 * 6 5 3 36 36 H 1.09001 * 109.47153 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.46967 * 60.00257 * 7 6 5 38 38 H 0.96999 * 119.99659 * 264.99880 * 10 8 7 39 39 H 1.08996 * 109.58790 * 353.41925 * 14 13 11 40 40 H 1.09009 * 109.58612 * 113.84123 * 14 13 11 41 41 H 1.09001 * 109.56676 * 185.55414 * 15 14 13 42 42 H 1.08997 * 109.35839 * 65.49900 * 15 14 13 43 43 H 1.08991 * 109.46257 * 301.22110 * 16 15 14 44 44 H 1.09007 * 109.46328 * 181.25595 * 16 15 14 45 45 H 0.97006 * 120.00113 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58815 * 246.15993 * 27 13 11 47 47 H 1.08998 * 109.58542 * 6.59053 * 27 13 11 48 48 H 1.08999 * 109.47303 * 299.99596 * 28 3 2 49 49 H 1.08999 * 109.46967 * 59.99993 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7293 2.2542 0.8417 5 6 1.7427 2.4015 -1.3074 6 6 2.0875 3.8922 -1.3077 7 6 3.6024 4.0653 -1.1822 8 6 4.0817 3.4313 0.1252 9 1 3.5893 3.9183 0.9670 10 7 5.5323 3.5977 0.2456 11 6 6.0396 4.7347 0.7616 12 8 5.3002 5.6584 1.0412 13 7 7.3667 4.8476 0.9679 14 6 8.2840 3.7827 0.5401 15 6 9.1420 3.3573 1.7302 16 6 9.8370 4.5864 2.3205 17 6 8.7844 5.5822 2.8131 18 1 8.1524 5.1032 3.5611 19 6 9.4690 6.7777 3.4239 20 1 10.5447 6.8637 3.3822 21 6 8.7219 7.7616 4.0362 22 7 7.4084 7.7060 4.0037 23 14 9.5756 9.1736 4.9118 24 1 9.6914 10.3310 3.9886 25 1 8.7827 9.5687 6.1037 26 1 10.9312 8.7439 5.3394 27 6 7.9229 6.0354 1.6302 28 6 3.7369 1.9412 0.1258 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2353 1.9149 -2.1492 33 1 0.6635 2.2778 -1.3970 34 1 1.7464 4.3438 -2.2393 35 1 1.5951 4.3791 -0.4659 36 1 3.8479 5.1273 -1.1820 37 1 4.0947 3.5784 -2.0240 38 1 6.1275 2.8895 -0.0460 39 1 7.7102 2.9284 0.1811 40 1 8.9282 4.1537 -0.2572 41 1 9.8923 2.6383 1.4009 42 1 8.5067 2.8994 2.4883 43 1 10.4528 5.0581 1.5548 44 1 10.4671 4.2811 3.1559 45 1 6.8828 8.3984 4.4341 46 1 8.5370 6.5938 0.9237 47 1 7.1107 6.6668 1.9904 48 1 4.0783 1.4896 1.0572 49 1 4.2295 1.4546 -0.7160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596319343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:29 Heat of formation + Delta-G solvation = -69.095753 kcal Electronic energy + Delta-G solvation = -26569.483038 eV Core-core repulsion = 23041.815053 eV Total energy + Delta-G solvation = -3527.667985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45433 -39.59912 -38.20570 -35.56924 -34.89127 -33.38173 -31.88855 -31.61477 -30.50199 -29.41099 -27.00598 -26.04029 -23.85686 -23.55691 -23.26029 -21.61001 -21.18059 -20.22164 -19.07430 -18.25973 -17.79038 -16.87784 -16.59771 -16.31893 -16.16073 -15.55900 -15.38005 -15.30979 -15.18623 -14.95622 -14.59457 -14.48273 -14.33931 -14.21551 -14.05341 -13.67674 -13.54943 -13.45402 -12.91564 -12.90195 -12.68718 -12.56009 -12.32580 -12.31611 -12.18662 -11.87830 -11.75379 -11.63533 -11.60113 -11.54175 -11.14920 -10.92527 -10.82328 -10.71128 -10.53448 -10.08409 -9.24802 -8.66818 -8.10585 -6.26775 0.69507 1.40541 1.41056 1.52645 1.64963 1.79616 2.28176 2.42324 3.01509 3.19806 3.60837 3.73375 3.82658 4.02984 4.10771 4.11529 4.18542 4.28938 4.31679 4.35747 4.37073 4.38984 4.40386 4.59389 4.60921 4.74190 4.81950 4.84011 4.86807 4.88691 4.99007 5.01805 5.06789 5.11683 5.19124 5.26542 5.27937 5.29633 5.32345 5.40529 5.57509 5.63122 5.66190 5.89767 5.97758 6.18351 6.36931 6.87074 7.16070 7.43073 7.71354 8.93528 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.002686 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.624361 B =10420.716168 C =10901.806865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.296 6.296 3 C -0.040 4.040 4 H 0.082 0.918 5 C -0.104 4.104 6 C -0.109 4.109 7 C -0.125 4.125 8 C 0.172 3.828 9 H 0.053 0.947 10 N -0.730 5.730 11 C 0.695 3.305 12 O -0.638 6.638 13 N -0.628 5.628 14 C 0.110 3.890 15 C -0.126 4.126 16 C -0.105 4.105 17 C 0.039 3.961 18 H -0.013 1.013 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.008 3.992 22 N -0.915 5.915 23 Si 0.958 3.042 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.261 1.261 27 C 0.146 3.854 28 C -0.094 4.094 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.407 0.593 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.259 0.741 46 H 0.034 0.966 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.212 -17.518 -13.790 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.067 6.067 3 C -0.170 4.170 4 H 0.101 0.899 5 C -0.143 4.143 6 C -0.149 4.149 7 C -0.164 4.164 8 C 0.065 3.935 9 H 0.071 0.929 10 N -0.389 5.389 11 C 0.397 3.603 12 O -0.520 6.520 13 N -0.364 5.364 14 C -0.012 4.012 15 C -0.164 4.164 16 C -0.143 4.143 17 C 0.019 3.981 18 H 0.005 0.995 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.553 5.553 23 Si 0.783 3.217 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.185 1.185 27 C 0.023 3.977 28 C -0.133 4.133 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.246 0.754 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.225 -17.714 -13.493 24.503 hybrid contribution -0.333 2.070 0.948 2.301 sum -10.558 -15.644 -12.545 22.662 Atomic orbital electron populations 1.23463 0.91539 1.07387 1.05810 1.86948 1.10403 1.11355 1.98041 1.23031 0.98693 0.93191 1.02043 0.89922 1.21841 1.01864 0.94768 0.95810 1.21482 0.94287 0.96388 1.02742 1.21900 0.97136 1.00083 0.97279 1.20696 0.79053 0.95704 0.98031 0.92917 1.45145 1.07905 1.17637 1.68233 1.16177 0.82491 0.83259 0.78400 1.90870 1.59475 1.41185 1.60459 1.47688 1.04386 1.22436 1.61877 1.21766 0.92470 0.89716 0.97229 1.21833 0.99374 0.97795 0.97379 1.21510 0.97626 0.95544 0.99601 1.18925 0.93022 0.94088 0.92037 0.99516 1.21518 0.93498 1.06039 1.36307 0.91931 1.25920 0.95331 1.00897 0.96969 1.70128 1.05883 1.35062 1.44275 0.85551 0.78801 0.79308 0.78058 1.20231 1.21301 1.18537 1.21564 0.97582 0.85586 0.92945 1.21459 0.93893 0.93830 1.04106 0.89130 0.87056 0.90160 0.89739 0.90274 0.89834 0.92652 0.94242 0.90097 0.75409 0.88187 0.90282 0.87704 0.93271 0.92407 0.93013 0.93232 0.94809 0.91339 0.90956 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.45 113.37 1.18 -0.02 16 2 S -0.30 -4.95 21.79 -56.49 -1.23 -6.18 16 3 C -0.04 -0.68 2.65 30.59 0.08 -0.60 16 4 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 5 C -0.10 -1.44 5.11 30.60 0.16 -1.28 16 6 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 7 C -0.13 -2.90 5.49 30.59 0.17 -2.73 16 8 C 0.17 4.46 2.41 44.98 0.11 4.57 16 9 H 0.05 1.75 7.65 -2.38 -0.02 1.73 16 10 N -0.73 -21.34 4.99 -457.88 -2.29 -23.62 16 11 C 0.70 29.12 8.26 179.06 1.48 30.60 16 12 O -0.64 -33.85 15.44 -3.98 -0.06 -33.91 16 13 N -0.63 -25.62 2.98 -837.75 -2.49 -28.11 16 14 C 0.11 3.11 6.40 86.22 0.55 3.66 16 15 C -0.13 -3.68 6.06 30.53 0.19 -3.49 16 16 C -0.11 -4.07 5.11 30.62 0.16 -3.92 16 17 C 0.04 1.98 2.19 -11.46 -0.03 1.96 16 18 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 19 C -0.54 -29.88 8.49 25.60 0.22 -29.66 16 20 H 0.06 3.35 7.75 -2.91 -0.02 3.32 16 21 C 0.01 0.47 5.36 84.66 0.45 0.93 16 22 N -0.91 -56.82 11.61 21.45 0.25 -56.57 16 23 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 27 C 0.15 7.48 5.46 86.36 0.47 7.95 16 28 C -0.09 -1.78 4.68 30.58 0.14 -1.64 16 29 H 0.09 0.74 7.14 -2.39 -0.02 0.73 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.08 0.88 6.92 -2.39 -0.02 0.87 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.04 1.20 8.09 -2.39 -0.02 1.18 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.41 8.90 6.06 -92.71 -0.56 8.34 16 39 H 0.10 2.02 5.57 -2.39 -0.01 2.01 16 40 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 46 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.07 4.22 5.38 -2.39 -0.01 4.21 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.71 384.89 2.07 -73.63 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.36 Total: 23.23 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.51 Total: 4.58 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -4.53 Total: -108.31 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.06 Total: -33.91 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -1.23 Total: -6.18 kcal Total: -75.71 2.07 -73.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596319343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.536 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds