Wall clock time and date at job start Tue Mar 31 2020 14:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81395 * 103.00131 * 2 1 4 4 H 1.09000 * 109.47010 * 54.99805 * 3 2 1 5 5 C 1.53006 * 109.46987 * 294.99990 * 3 2 1 6 6 C 1.53001 * 109.47156 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47190 * 59.99325 * 6 5 3 8 8 C 1.52997 * 109.47532 * 300.00295 * 7 6 5 9 9 H 1.09001 * 109.47147 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46880 * 299.99849 * 8 7 6 11 11 C 1.34768 * 120.00356 * 274.72140 * 10 8 7 12 12 O 1.21588 * 119.99750 * 355.29159 * 11 10 8 13 13 N 1.34776 * 120.00360 * 175.29058 * 11 10 8 14 14 C 1.46928 * 120.62874 * 5.23095 * 13 11 10 15 15 C 1.53187 * 108.77730 * 126.36878 * 14 13 11 16 16 C 1.53039 * 109.31301 * 54.63266 * 15 14 13 17 17 C 1.53032 * 109.54002 * 298.63530 * 16 15 14 18 18 H 1.09001 * 109.50077 * 301.38317 * 17 16 15 19 19 C 1.50703 * 109.49867 * 181.31620 * 17 16 15 20 20 H 1.07993 * 120.00063 * 359.97438 * 19 17 16 21 21 C 1.37880 * 119.99879 * 180.02562 * 19 17 16 22 22 N 1.31517 * 120.00269 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 119.99820 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47291 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47328 * 120.00192 * 23 21 19 26 26 H 1.48501 * 109.46819 * 239.99798 * 23 21 19 27 27 C 1.46926 * 120.63194 * 184.94721 * 13 11 10 28 28 C 1.52995 * 109.47108 * 59.99987 * 8 7 6 29 29 H 1.09004 * 109.46987 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47216 * 300.00389 * 1 2 3 31 31 H 1.09001 * 109.47103 * 60.00184 * 1 2 3 32 32 H 1.09000 * 109.46570 * 299.99713 * 5 3 2 33 33 H 1.08993 * 109.47523 * 59.99711 * 5 3 2 34 34 H 1.08991 * 109.46863 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.46612 * 299.99674 * 6 5 3 36 36 H 1.09002 * 109.46863 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47058 * 60.00622 * 7 6 5 38 38 H 0.97009 * 119.99705 * 95.00657 * 10 8 7 39 39 H 1.09006 * 109.58636 * 246.15958 * 14 13 11 40 40 H 1.08999 * 109.58431 * 6.43391 * 14 13 11 41 41 H 1.09004 * 109.50017 * 174.58668 * 15 14 13 42 42 H 1.08999 * 109.49586 * 294.65134 * 15 14 13 43 43 H 1.09004 * 109.45892 * 58.65803 * 16 15 14 44 44 H 1.09001 * 109.45919 * 178.62362 * 16 15 14 45 45 H 0.96998 * 119.99851 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58564 * 353.42033 * 27 13 11 47 47 H 1.09004 * 109.58305 * 113.84694 * 27 13 11 48 48 H 1.09000 * 109.46883 * 60.00040 * 28 8 7 49 49 H 1.09003 * 109.47174 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4015 -1.3074 6 6 2.0876 3.8922 -1.3077 7 6 3.6025 4.0653 -1.1822 8 6 4.0818 3.4313 0.1252 9 1 5.1610 3.5551 0.2148 10 7 3.4200 4.0858 1.2566 11 6 3.9342 5.2188 1.7745 12 8 4.9923 5.6512 1.3600 13 7 3.2755 5.8726 2.7518 14 6 2.0561 5.3043 3.3425 15 6 2.2263 5.2452 4.8637 16 6 2.5885 6.6371 5.3869 17 6 3.9145 7.0869 4.7696 18 1 4.6950 6.3687 5.0209 19 6 4.2864 8.4436 5.3102 20 1 3.6415 8.9364 6.0225 21 6 5.4496 9.0561 4.8944 22 7 6.2344 8.4567 4.0258 23 14 5.9109 10.7375 5.5649 24 1 4.8686 11.1927 6.5198 25 1 7.2185 10.6502 6.2633 26 1 6.0121 11.7065 4.4442 27 6 3.7666 7.1642 3.2511 28 6 3.7371 1.9407 0.1255 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2355 1.9149 -2.1491 33 1 0.6636 2.2778 -1.3971 34 1 1.7457 4.3439 -2.2389 35 1 1.5952 4.3791 -0.4659 36 1 3.8480 5.1273 -1.1819 37 1 4.0949 3.5784 -2.0240 38 1 2.6141 3.7013 1.6357 39 1 1.2020 5.9346 3.0945 40 1 1.8946 4.2998 2.9514 41 1 1.2937 4.9157 5.3217 42 1 3.0222 4.5437 5.1137 43 1 1.8034 7.3428 5.1151 44 1 2.6862 6.6030 6.4720 45 1 7.0528 8.8875 3.7336 46 1 4.7348 7.3854 2.8018 47 1 3.0549 7.9492 2.9957 48 1 4.2294 1.4538 -0.7163 49 1 4.0781 1.4890 1.0571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596319344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:33 Heat of formation + Delta-G solvation = -46.766699 kcal Electronic energy + Delta-G solvation = -27107.358289 eV Core-core repulsion = 23580.658564 eV Total energy + Delta-G solvation = -3526.699725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19185 -38.47823 -36.57802 -33.73423 -33.04725 -31.74323 -31.07924 -30.09557 -29.52730 -28.81704 -25.05594 -24.47840 -22.93818 -22.65857 -21.79670 -20.65362 -19.16414 -18.85112 -17.60768 -16.67990 -16.22060 -15.74418 -15.53182 -15.06447 -14.64403 -14.50340 -14.27582 -14.01781 -13.75929 -13.69847 -13.67004 -13.37248 -13.08450 -12.72223 -12.59917 -12.39810 -12.32626 -12.15699 -12.03415 -11.88783 -11.71245 -10.98971 -10.98026 -10.88687 -10.73278 -10.47740 -10.43016 -10.31640 -10.20917 -9.96867 -9.85350 -9.39791 -9.07425 -8.91529 -8.70654 -8.39744 -7.97613 -7.62048 -5.95708 -4.04975 1.38034 2.27286 3.23308 3.32867 3.40305 3.43154 3.87046 4.35793 4.36541 4.38381 4.47731 4.74059 4.79501 4.83456 4.92222 4.99290 5.10285 5.19707 5.24953 5.31541 5.33865 5.41147 5.47510 5.51005 5.61490 5.65149 5.74313 5.77408 5.95640 5.98419 6.06637 6.14758 6.17785 6.24379 6.32135 6.60551 6.68709 6.82144 6.89321 7.01075 7.06450 7.38458 7.53666 7.77666 7.96106 8.09858 8.43875 8.61971 8.98987 9.29819 9.60530 11.09066 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.003014 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.737766 B = 9287.431385 C =10006.588627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.267 6.267 3 C -0.048 4.048 4 H 0.084 0.916 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.132 4.132 8 C 0.171 3.829 9 H 0.095 0.905 10 N -0.751 5.751 11 C 0.701 3.299 12 O -0.581 6.581 13 N -0.623 5.623 14 C 0.117 3.883 15 C -0.133 4.133 16 C -0.109 4.109 17 C 0.039 3.961 18 H 0.028 0.972 19 C -0.521 4.521 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.877 5.877 23 Si 0.891 3.109 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.129 3.871 28 C -0.106 4.106 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.387 0.613 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.262 0.738 46 H 0.124 0.876 47 H 0.038 0.962 48 H 0.086 0.914 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 -15.546 -10.135 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.038 6.038 3 C -0.177 4.177 4 H 0.102 0.898 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.171 4.171 8 C 0.063 3.937 9 H 0.113 0.887 10 N -0.411 5.411 11 C 0.402 3.598 12 O -0.458 6.458 13 N -0.359 5.359 14 C -0.007 4.007 15 C -0.172 4.172 16 C -0.147 4.147 17 C 0.020 3.980 18 H 0.046 0.954 19 C -0.559 4.559 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.515 5.515 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.009 3.991 28 C -0.145 4.145 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.223 0.777 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.142 0.858 47 H 0.056 0.944 48 H 0.105 0.895 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.046 -16.092 -10.528 22.177 hybrid contribution -1.134 1.664 0.620 2.107 sum -12.179 -14.428 -9.908 21.323 Atomic orbital electron populations 1.23386 0.94366 1.06320 1.04959 1.86896 1.07239 1.11701 1.97926 1.23200 1.00411 0.92880 1.01228 0.89804 1.21874 1.00632 0.96352 0.96266 1.21499 0.96817 0.94911 1.02100 1.21968 0.95488 1.02360 0.97298 1.20655 0.98550 0.89269 0.85225 0.88684 1.45475 1.31526 1.27663 1.36421 1.15959 0.83542 0.80135 0.80151 1.90926 1.21899 1.68428 1.64540 1.47778 1.26728 1.23951 1.37469 1.21457 0.88142 0.96771 0.94368 1.21944 1.00618 0.99963 0.94656 1.21607 1.00018 0.93504 0.99554 1.18910 0.91464 0.96825 0.90847 0.95366 1.21104 1.06403 1.02629 1.25813 0.92386 1.25062 0.96309 0.97714 0.94983 1.69911 1.12906 1.37745 1.30930 0.86558 0.78363 0.84383 0.78826 1.19838 1.21037 1.21004 1.22079 1.01216 0.78465 0.97378 1.21674 0.92395 0.96385 1.04085 0.88260 0.90499 0.90468 0.90594 0.92107 0.91704 0.91765 0.90801 0.91174 0.77656 0.92311 0.92504 0.92420 0.92170 0.93252 0.93091 0.92739 0.85845 0.94401 0.89541 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.45 101.05 1.06 0.27 16 2 S -0.27 -2.43 21.79 -107.50 -2.34 -4.77 16 3 C -0.05 -0.43 2.48 -26.73 -0.07 -0.49 16 4 H 0.08 0.74 6.51 -51.92 -0.34 0.41 16 5 C -0.11 -0.90 5.11 -26.73 -0.14 -1.04 16 6 C -0.11 -1.07 5.77 -26.73 -0.15 -1.23 16 7 C -0.13 -1.50 5.61 -26.73 -0.15 -1.65 16 8 C 0.17 2.13 2.83 -67.93 -0.19 1.94 16 9 H 0.10 1.42 7.50 -51.93 -0.39 1.03 16 10 N -0.75 -10.80 4.14 -58.68 -0.24 -11.04 16 11 C 0.70 14.02 8.27 -86.93 -0.72 13.30 16 12 O -0.58 -14.36 15.39 5.29 0.08 -14.28 16 13 N -0.62 -12.43 2.98 -178.76 -0.53 -12.97 16 14 C 0.12 1.79 6.39 -3.71 -0.02 1.77 16 15 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 16 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 17 C 0.04 0.96 2.24 -91.88 -0.21 0.76 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.52 -14.17 8.56 -34.44 -0.29 -14.46 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.88 -25.81 11.39 55.43 0.63 -25.18 16 23 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.13 3.15 5.39 -3.93 -0.02 3.12 16 28 C -0.11 -1.04 4.89 -26.73 -0.13 -1.18 16 29 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.44 7.14 -51.92 -0.37 0.07 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.44 6.92 -51.93 -0.36 0.08 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.39 4.69 4.36 -40.82 -0.18 4.51 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.70 5.64 -51.93 -0.29 0.40 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 46 H 0.12 3.54 5.10 -51.93 -0.26 3.28 16 47 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -31.52 379.97 -11.60 -43.12 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.47 Total: 4.91 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.43 Total: -1.86 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.14 Total: -49.19 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.34 Total: -4.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.52 -11.60 -43.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596319344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.643 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds