Wall clock time and date at job start Tue Mar 31 2020 14:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81395 * 103.00131 * 2 1 4 4 H 1.09000 * 109.47010 * 54.99805 * 3 2 1 5 5 C 1.53006 * 109.46987 * 294.99990 * 3 2 1 6 6 C 1.53001 * 109.47156 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47190 * 59.99325 * 6 5 3 8 8 C 1.52997 * 109.47532 * 300.00295 * 7 6 5 9 9 H 1.09001 * 109.47147 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46880 * 299.99849 * 8 7 6 11 11 C 1.34768 * 120.00356 * 274.72140 * 10 8 7 12 12 O 1.21588 * 119.99750 * 355.29159 * 11 10 8 13 13 N 1.34776 * 120.00360 * 175.29058 * 11 10 8 14 14 C 1.46928 * 120.62874 * 5.23095 * 13 11 10 15 15 C 1.53187 * 108.77730 * 126.36878 * 14 13 11 16 16 C 1.53039 * 109.31301 * 54.63266 * 15 14 13 17 17 C 1.53032 * 109.54002 * 298.63530 * 16 15 14 18 18 H 1.09001 * 109.50077 * 301.38317 * 17 16 15 19 19 C 1.50703 * 109.49867 * 181.31620 * 17 16 15 20 20 H 1.07993 * 120.00063 * 359.97438 * 19 17 16 21 21 C 1.37880 * 119.99879 * 180.02562 * 19 17 16 22 22 N 1.31517 * 120.00269 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 119.99820 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47291 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47328 * 120.00192 * 23 21 19 26 26 H 1.48501 * 109.46819 * 239.99798 * 23 21 19 27 27 C 1.46926 * 120.63194 * 184.94721 * 13 11 10 28 28 C 1.52995 * 109.47108 * 59.99987 * 8 7 6 29 29 H 1.09004 * 109.46987 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47216 * 300.00389 * 1 2 3 31 31 H 1.09001 * 109.47103 * 60.00184 * 1 2 3 32 32 H 1.09000 * 109.46570 * 299.99713 * 5 3 2 33 33 H 1.08993 * 109.47523 * 59.99711 * 5 3 2 34 34 H 1.08991 * 109.46863 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.46612 * 299.99674 * 6 5 3 36 36 H 1.09002 * 109.46863 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47058 * 60.00622 * 7 6 5 38 38 H 0.97009 * 119.99705 * 95.00657 * 10 8 7 39 39 H 1.09006 * 109.58636 * 246.15958 * 14 13 11 40 40 H 1.08999 * 109.58431 * 6.43391 * 14 13 11 41 41 H 1.09004 * 109.50017 * 174.58668 * 15 14 13 42 42 H 1.08999 * 109.49586 * 294.65134 * 15 14 13 43 43 H 1.09004 * 109.45892 * 58.65803 * 16 15 14 44 44 H 1.09001 * 109.45919 * 178.62362 * 16 15 14 45 45 H 0.96998 * 119.99851 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58564 * 353.42033 * 27 13 11 47 47 H 1.09004 * 109.58305 * 113.84694 * 27 13 11 48 48 H 1.09000 * 109.46883 * 60.00040 * 28 8 7 49 49 H 1.09003 * 109.47174 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4015 -1.3074 6 6 2.0876 3.8922 -1.3077 7 6 3.6025 4.0653 -1.1822 8 6 4.0818 3.4313 0.1252 9 1 5.1610 3.5551 0.2148 10 7 3.4200 4.0858 1.2566 11 6 3.9342 5.2188 1.7745 12 8 4.9923 5.6512 1.3600 13 7 3.2755 5.8726 2.7518 14 6 2.0561 5.3043 3.3425 15 6 2.2263 5.2452 4.8637 16 6 2.5885 6.6371 5.3869 17 6 3.9145 7.0869 4.7696 18 1 4.6950 6.3687 5.0209 19 6 4.2864 8.4436 5.3102 20 1 3.6415 8.9364 6.0225 21 6 5.4496 9.0561 4.8944 22 7 6.2344 8.4567 4.0258 23 14 5.9109 10.7375 5.5649 24 1 4.8686 11.1927 6.5198 25 1 7.2185 10.6502 6.2633 26 1 6.0121 11.7065 4.4442 27 6 3.7666 7.1642 3.2511 28 6 3.7371 1.9407 0.1255 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2355 1.9149 -2.1491 33 1 0.6636 2.2778 -1.3971 34 1 1.7457 4.3439 -2.2389 35 1 1.5952 4.3791 -0.4659 36 1 3.8480 5.1273 -1.1819 37 1 4.0949 3.5784 -2.0240 38 1 2.6141 3.7013 1.6357 39 1 1.2020 5.9346 3.0945 40 1 1.8946 4.2998 2.9514 41 1 1.2937 4.9157 5.3217 42 1 3.0222 4.5437 5.1137 43 1 1.8034 7.3428 5.1151 44 1 2.6862 6.6030 6.4720 45 1 7.0528 8.8875 3.7336 46 1 4.7348 7.3854 2.8018 47 1 3.0549 7.9492 2.9957 48 1 4.2294 1.4538 -0.7163 49 1 4.0781 1.4890 1.0571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596319344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:32 Heat of formation + Delta-G solvation = -64.536885 kcal Electronic energy + Delta-G solvation = -27108.128862 eV Core-core repulsion = 23580.658564 eV Total energy + Delta-G solvation = -3527.470298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56558 -39.68553 -38.16299 -35.44277 -34.55214 -33.36481 -31.89703 -31.60600 -30.70439 -29.46049 -27.01743 -26.05615 -23.77046 -23.63274 -23.35195 -22.08034 -20.59441 -20.11897 -19.12325 -18.23696 -17.48374 -17.06779 -16.67630 -16.40643 -16.18557 -15.70750 -15.33637 -15.24765 -15.18256 -14.80983 -14.56956 -14.34920 -14.32399 -14.10497 -13.95981 -13.75453 -13.53038 -13.21624 -13.17496 -12.90844 -12.81879 -12.63041 -12.53127 -12.27618 -12.20853 -11.86992 -11.76748 -11.63516 -11.53073 -11.21293 -11.16371 -10.94603 -10.80951 -10.68728 -10.51416 -10.07100 -9.24297 -8.64404 -8.08881 -6.26621 0.74441 1.39818 1.41326 1.53430 1.67819 1.81799 2.28731 2.42438 3.04789 3.20394 3.58882 3.64121 3.86248 4.00907 4.08712 4.14659 4.15238 4.26260 4.32571 4.38509 4.39152 4.41336 4.58205 4.59114 4.63438 4.70066 4.79462 4.81544 4.86011 4.92460 4.98919 5.03412 5.08856 5.10477 5.21741 5.26415 5.27814 5.29681 5.33817 5.38640 5.57488 5.66030 5.67799 5.90939 5.99908 6.18640 6.37624 6.87145 7.16127 7.43422 7.73340 8.94154 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.003014 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.737766 B = 9287.431385 C =10006.588627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.301 6.301 3 C -0.041 4.041 4 H 0.087 0.913 5 C -0.103 4.103 6 C -0.107 4.107 7 C -0.128 4.128 8 C 0.168 3.832 9 H 0.063 0.937 10 N -0.726 5.726 11 C 0.695 3.305 12 O -0.638 6.638 13 N -0.628 5.628 14 C 0.112 3.888 15 C -0.126 4.126 16 C -0.104 4.104 17 C 0.038 3.962 18 H -0.017 1.017 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.008 3.992 22 N -0.914 5.914 23 Si 0.958 3.042 24 H -0.260 1.260 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.144 3.856 28 C -0.096 4.096 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.088 0.912 38 H 0.402 0.598 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.259 0.741 46 H 0.075 0.925 47 H 0.033 0.967 48 H 0.097 0.903 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.114 -17.006 -10.215 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.073 6.073 3 C -0.170 4.170 4 H 0.105 0.895 5 C -0.142 4.142 6 C -0.147 4.147 7 C -0.167 4.167 8 C 0.061 3.939 9 H 0.081 0.919 10 N -0.386 5.386 11 C 0.396 3.604 12 O -0.519 6.519 13 N -0.364 5.364 14 C -0.010 4.010 15 C -0.164 4.164 16 C -0.142 4.142 17 C 0.018 3.982 18 H 0.001 0.999 19 C -0.573 4.573 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.553 5.553 23 Si 0.783 3.217 24 H -0.184 1.184 25 H -0.210 1.210 26 H -0.209 1.209 27 C 0.021 3.979 28 C -0.135 4.135 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.106 0.894 38 H 0.242 0.758 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.052 0.948 48 H 0.116 0.884 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.566 -17.606 -10.597 25.188 hybrid contribution -0.068 2.054 0.636 2.151 sum -14.635 -15.552 -9.961 23.564 Atomic orbital electron populations 1.23458 0.91487 1.07302 1.05908 1.87066 1.10442 1.11726 1.98028 1.23102 0.99065 0.92953 1.01857 0.89499 1.21825 1.01757 0.94754 0.95900 1.21447 0.94617 0.96245 1.02373 1.21909 0.97611 1.00087 0.97108 1.20766 0.96799 0.91243 0.85082 0.91872 1.45230 1.31524 1.25630 1.36203 1.16193 0.82965 0.81155 0.80063 1.90888 1.24608 1.70174 1.66257 1.47664 1.28189 1.22832 1.37687 1.21815 0.86402 0.98990 0.93838 1.21906 1.02376 0.96990 0.95149 1.21492 0.97151 0.96209 0.99298 1.18839 0.93006 0.94826 0.91499 0.99925 1.21545 1.06453 1.03727 1.25591 0.91952 1.25917 0.96447 1.01533 0.95217 1.70120 1.13232 1.39446 1.32457 0.85512 0.78165 0.79749 0.78275 1.18353 1.20955 1.20855 1.21455 0.98889 0.80686 0.96833 1.21552 0.93892 0.93677 1.04341 0.87314 0.89722 0.89316 0.90102 0.90326 0.90580 0.92557 0.94355 0.89354 0.75847 0.90132 0.88739 0.87736 0.93437 0.92302 0.93094 0.93237 0.90673 0.94823 0.88406 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.45 113.37 1.19 0.14 16 2 S -0.30 -4.67 21.79 -56.49 -1.23 -5.90 16 3 C -0.04 -0.61 2.48 30.60 0.08 -0.53 16 4 H 0.09 1.23 6.51 -2.39 -0.02 1.21 16 5 C -0.10 -1.32 5.11 30.60 0.16 -1.16 16 6 C -0.11 -1.80 5.77 30.59 0.18 -1.62 16 7 C -0.13 -2.89 5.61 30.59 0.17 -2.72 16 8 C 0.17 4.23 2.83 44.99 0.13 4.36 16 9 H 0.06 2.02 7.50 -2.39 -0.02 2.00 16 10 N -0.73 -20.65 4.14 -457.83 -1.90 -22.55 16 11 C 0.69 28.76 8.27 179.06 1.48 30.24 16 12 O -0.64 -33.84 15.39 -3.99 -0.06 -33.90 16 13 N -0.63 -25.37 2.98 -837.74 -2.50 -27.86 16 14 C 0.11 3.12 6.39 86.36 0.55 3.67 16 15 C -0.13 -3.70 6.08 30.67 0.19 -3.51 16 16 C -0.10 -4.01 5.11 30.62 0.16 -3.86 16 17 C 0.04 1.93 2.24 -11.61 -0.03 1.91 16 18 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 19 C -0.53 -29.83 8.56 25.60 0.22 -29.61 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.47 5.30 84.65 0.45 0.92 16 22 N -0.91 -56.73 11.39 21.45 0.24 -56.49 16 23 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 27 C 0.14 7.34 5.39 86.22 0.46 7.80 16 28 C -0.10 -1.75 4.89 30.59 0.15 -1.60 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.64 7.14 -2.39 -0.02 0.62 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 0.79 6.92 -2.39 -0.02 0.78 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.04 7.60 -2.39 -0.02 1.02 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.40 8.84 4.36 -92.70 -0.40 8.43 16 39 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.09 1.93 5.64 -2.39 -0.01 1.91 16 41 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.07 4.62 5.10 -2.39 -0.01 4.60 16 47 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.36 379.97 2.63 -72.73 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.52 Total: 22.64 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.52 Total: 4.43 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -4.15 Total: -106.90 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.06 Total: -33.90 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -1.23 Total: -5.90 kcal Total: -75.36 2.63 -72.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596319344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.191 kcal (2) G-P(sol) polarization free energy of solvation -75.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds