Wall clock time and date at job start Tue Mar 31 2020 14:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38137 * 120.03238 * 2 1 4 4 C 1.38259 * 120.06706 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.93560 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47555 * 89.99757 * 5 4 3 7 7 C 1.46848 * 110.99818 * 45.79011 * 6 5 4 8 8 C 1.53036 * 109.52326 * 185.84390 * 7 6 5 9 9 C 1.53124 * 109.27491 * 300.81846 * 8 7 6 10 10 C 1.53121 * 109.16036 * 57.65991 * 9 8 7 11 11 H 1.08995 * 109.54064 * 62.30085 * 10 9 8 12 12 C 1.50699 * 109.50243 * 182.40286 * 10 9 8 13 13 H 1.08005 * 120.00101 * 119.79670 * 12 10 9 14 14 C 1.37877 * 119.99916 * 299.79875 * 12 10 9 15 15 N 1.31517 * 119.99677 * 180.02562 * 14 12 10 16 16 Si 1.86787 * 120.00058 * 0.02562 * 14 12 10 17 17 H 1.48501 * 109.47696 * 89.99891 * 16 14 12 18 18 H 1.48507 * 109.47051 * 209.99844 * 16 14 12 19 19 H 1.48505 * 109.47333 * 329.99856 * 16 14 12 20 20 C 1.46844 * 111.00118 * 170.00062 * 6 5 4 21 21 C 1.38297 * 120.13209 * 0.25141 * 4 3 2 22 22 C 1.38105 * 120.06457 * 359.49307 * 21 4 3 23 23 C 1.38810 * 120.03151 * 179.97438 * 2 1 3 24 24 N 1.40195 * 120.06855 * 0.05073 * 23 2 1 25 25 C 1.34727 * 126.84239 * 226.85403 * 24 23 2 26 26 N 1.30848 * 108.03228 * 179.83398 * 25 24 23 27 27 C 1.33255 * 109.84455 * 0.44579 * 26 25 24 28 28 N 1.30755 * 108.99829 * 359.72594 * 27 26 25 29 29 H 1.09001 * 109.46779 * 95.33324 * 1 2 3 30 30 H 1.09001 * 109.47471 * 215.32629 * 1 2 3 31 31 H 1.08992 * 109.47312 * 335.33291 * 1 2 3 32 32 H 1.08002 * 119.96725 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.46941 * 329.99516 * 5 4 3 34 34 H 1.09000 * 109.47474 * 210.00025 * 5 4 3 35 35 H 1.08994 * 109.46137 * 65.82323 * 7 6 5 36 36 H 1.09003 * 109.45189 * 305.85080 * 7 6 5 37 37 H 1.09002 * 109.50178 * 180.88416 * 8 7 6 38 38 H 1.09002 * 109.50570 * 60.76084 * 8 7 6 39 39 H 1.08995 * 109.52381 * 297.74945 * 9 8 7 40 40 H 1.09000 * 109.57063 * 177.58896 * 9 8 7 41 41 H 0.97002 * 119.99742 * 180.02562 * 15 14 12 42 42 H 1.09005 * 109.46279 * 54.14576 * 20 6 5 43 43 H 1.08991 * 109.46293 * 294.17391 * 20 6 5 44 44 H 1.08001 * 119.96753 * 179.72662 * 21 4 3 45 45 H 1.08003 * 120.02934 * 180.28131 * 22 21 4 46 46 H 1.08001 * 125.98222 * 0.02562 * 25 24 23 47 47 H 1.08005 * 125.50219 * 179.72253 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1967 0.0005 5 6 4.3322 2.5031 -0.0001 6 7 4.5758 2.9287 1.3847 7 6 5.0655 1.8101 2.2005 8 6 5.1689 2.2503 3.6625 9 6 6.1277 3.4398 3.7656 10 6 5.6206 4.5731 2.8694 11 1 4.6428 4.9044 3.2188 12 6 6.5899 5.7260 2.9194 13 1 7.0747 6.0634 2.0152 14 6 6.8578 6.3500 4.1193 15 7 7.7033 7.3564 4.1627 16 14 6.0199 5.7659 5.6832 17 1 6.8502 4.7169 6.3277 18 1 5.8576 6.9107 6.6151 19 1 4.6854 5.2057 5.3503 20 6 5.5041 4.0655 1.4304 21 6 4.2759 0.0011 -0.0042 22 6 3.5903 -1.1977 0.0011 23 6 2.2017 -1.2017 0.0005 24 7 1.5029 -2.4171 0.0000 25 6 1.7388 -3.4850 0.7869 26 7 0.8692 -4.4136 0.4808 27 6 0.0728 -3.9830 -0.4969 28 7 0.4214 -2.7663 -0.8252 29 1 -0.3633 -0.0955 -1.0232 30 1 -0.3634 -0.8384 0.5942 31 1 -0.3633 0.9338 0.4289 32 1 1.6584 2.1312 -0.0004 33 1 3.7420 3.2614 -0.5147 34 1 5.2850 2.3742 -0.5134 35 1 6.0483 1.5031 1.8432 36 1 4.3724 0.9726 2.1216 37 1 5.5473 1.4247 4.2653 38 1 4.1838 2.5445 4.0247 39 1 7.1223 3.1353 3.4402 40 1 6.1720 3.7846 4.7987 41 1 7.8920 7.7951 5.0070 42 1 5.1297 4.8660 0.7921 43 1 6.4849 3.7479 1.0767 44 1 5.3559 0.0049 -0.0082 45 1 4.1336 -2.1311 0.0020 46 1 2.5086 -3.5601 1.5406 47 1 -0.7310 -4.5478 -0.9458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597173180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:07 Heat of formation + Delta-G solvation = 125.623762 kcal Electronic energy + Delta-G solvation = -27319.620277 eV Core-core repulsion = 23697.244763 eV Total energy + Delta-G solvation = -3622.375514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.59868 -40.13483 -38.34258 -35.20725 -33.52445 -33.02056 -32.16179 -31.55248 -30.39987 -30.02740 -27.30743 -26.32354 -24.99514 -23.78370 -22.79982 -22.29272 -21.81672 -21.24604 -20.31551 -18.92306 -18.46220 -16.77217 -16.59311 -15.94029 -15.86323 -15.45333 -15.23581 -14.53320 -14.43135 -14.35363 -14.01294 -13.88941 -13.75180 -13.60839 -13.33615 -12.94176 -12.78081 -12.56412 -12.40459 -12.25826 -12.17595 -11.72049 -11.47591 -11.38706 -11.11317 -11.07514 -10.68614 -10.45430 -10.42453 -10.16201 -10.11815 -9.98551 -9.72920 -9.21265 -9.07754 -8.96040 -8.70694 -8.53877 -7.89316 -6.09389 -4.08762 0.52618 1.00668 1.46048 1.93885 2.58153 3.25313 3.26479 3.38145 3.41062 3.94735 4.31334 4.36438 4.40291 4.41493 4.46496 4.57380 4.67724 4.99652 5.06040 5.18063 5.22085 5.28935 5.34191 5.40336 5.41589 5.50265 5.63477 5.68385 5.75715 5.79496 5.87776 5.92967 5.96224 6.06478 6.08896 6.10539 6.22760 6.27108 6.33313 6.39083 6.43989 6.56448 6.73691 6.75585 6.79824 7.15727 7.33370 7.48786 7.60843 7.67847 7.82025 8.49028 8.93536 9.53362 11.03788 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.002540 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.567715 B =11021.517933 C =11290.478565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.062 4.062 3 C -0.087 4.087 4 C -0.054 4.054 5 C 0.088 3.912 6 N -0.534 5.534 7 C 0.059 3.941 8 C -0.120 4.120 9 C -0.123 4.123 10 C 0.021 3.979 11 H 0.036 0.964 12 C -0.515 4.515 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.902 5.902 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.299 1.299 19 H -0.263 1.263 20 C 0.077 3.923 21 C -0.103 4.103 22 C -0.110 4.110 23 C 0.119 3.881 24 N -0.325 5.325 25 C 0.262 3.738 26 N -0.543 5.543 27 C 0.196 3.804 28 N -0.309 5.309 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.263 0.737 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.133 0.867 45 H 0.130 0.870 46 H 0.220 0.780 47 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 -19.990 -8.978 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.064 4.064 3 C -0.106 4.106 4 C -0.055 4.055 5 C -0.040 4.040 6 N -0.259 5.259 7 C -0.069 4.069 8 C -0.157 4.157 9 C -0.160 4.160 10 C 0.002 3.998 11 H 0.054 0.946 12 C -0.553 4.553 13 H 0.091 0.909 14 C -0.131 4.131 15 N -0.540 5.540 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.226 1.226 19 H -0.188 1.188 20 C -0.050 4.050 21 C -0.122 4.122 22 C -0.130 4.130 23 C 0.028 3.972 24 N -0.109 5.109 25 C -0.034 4.034 26 N -0.269 5.269 27 C -0.107 4.107 28 N -0.135 5.135 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.151 0.849 45 H 0.148 0.852 46 H 0.237 0.763 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.777 -19.574 -9.081 25.077 hybrid contribution 0.749 -0.540 0.770 1.203 sum -12.028 -20.114 -8.310 24.866 Atomic orbital electron populations 1.20727 0.90129 1.02494 1.03004 1.19815 0.96798 0.91181 0.98619 1.20918 0.93422 0.97197 0.99082 1.20048 0.93861 0.95193 0.96379 1.21146 0.98269 0.92858 0.91689 1.62198 1.48416 1.07671 1.07630 1.22127 0.97450 0.93160 0.94194 1.21655 1.00776 0.98461 0.94853 1.22032 0.98138 0.95668 1.00198 1.19154 0.97443 0.93066 0.90161 0.94631 1.20990 1.24773 1.13667 0.95888 0.90948 1.24984 0.94612 0.94566 0.98947 1.69900 1.34886 1.22678 1.26526 0.86829 0.80962 0.77135 0.83248 1.20738 1.22627 1.18801 1.22129 0.92003 0.90725 1.00142 1.20969 1.00300 0.90927 1.00040 1.20915 0.91183 0.99311 1.01628 1.17244 0.90044 0.82068 1.07852 1.47617 1.24468 1.11870 1.26984 1.26251 0.98698 0.82703 0.95701 1.70610 1.08252 1.30409 1.17666 1.26133 0.99548 0.90962 0.94031 1.78235 1.02988 1.16490 1.15797 0.90326 0.92037 0.91164 0.84506 0.89633 0.93824 0.95446 0.91405 0.92864 0.91884 0.92576 0.93541 0.92672 0.91300 0.95361 0.84937 0.85241 0.76348 0.76428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 8.88 36.01 0.32 -0.70 16 2 C -0.06 -0.65 5.89 -104.45 -0.62 -1.27 16 3 C -0.09 -0.92 9.33 -39.61 -0.37 -1.29 16 4 C -0.05 -0.59 4.11 -104.59 -0.43 -1.02 16 5 C 0.09 1.09 5.43 -4.98 -0.03 1.06 16 6 N -0.53 -8.39 4.80 -236.11 -1.13 -9.53 16 7 C 0.06 0.87 4.58 -3.83 -0.02 0.85 16 8 C -0.12 -2.02 6.09 -26.65 -0.16 -2.18 16 9 C -0.12 -2.56 4.74 -26.60 -0.13 -2.69 16 10 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 11 H 0.04 0.86 7.20 -51.93 -0.37 0.48 16 12 C -0.51 -14.04 9.14 -34.44 -0.31 -14.36 16 13 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 14 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 15 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 16 Si 0.89 21.79 24.36 -169.99 -4.14 17.65 16 17 H -0.28 -6.71 6.89 56.52 0.39 -6.32 16 18 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 20 C 0.08 1.45 4.65 -3.83 -0.02 1.43 16 21 C -0.10 -0.99 7.80 -39.61 -0.31 -1.30 16 22 C -0.11 -0.99 9.65 -39.40 -0.38 -1.37 16 23 C 0.12 1.23 6.28 -83.59 -0.52 0.70 16 24 N -0.32 -3.35 3.14 -11.81 -0.04 -3.39 16 25 C 0.26 2.33 12.31 -90.37 -1.11 1.22 16 26 N -0.54 -5.55 11.19 -15.74 -0.18 -5.72 16 27 C 0.20 1.82 13.03 -91.76 -1.20 0.63 16 28 N -0.31 -3.39 11.10 29.30 0.33 -3.06 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.64 7.22 -51.93 -0.37 0.27 16 31 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.04 0.52 8.02 -51.93 -0.42 0.11 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.90 5.65 -51.93 -0.29 0.60 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.04 3.36 -51.93 -0.17 0.86 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.13 0.90 8.04 -52.48 -0.42 0.48 16 46 H 0.22 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.22 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -32.06 369.41 -11.51 -43.58 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.14 Total: -0.53 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -5.55 Total: -18.09 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.25 Total: -48.18 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.06 -11.51 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.200 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds