Wall clock time and date at job start Tue Mar 31 2020 14:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38137 * 120.03238 * 2 1 4 4 C 1.38259 * 120.06706 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.93560 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47555 * 89.99757 * 5 4 3 7 7 C 1.46848 * 110.99818 * 45.79011 * 6 5 4 8 8 C 1.53036 * 109.52326 * 185.84390 * 7 6 5 9 9 C 1.53124 * 109.27491 * 300.81846 * 8 7 6 10 10 C 1.53121 * 109.16036 * 57.65991 * 9 8 7 11 11 H 1.08995 * 109.54064 * 62.30085 * 10 9 8 12 12 C 1.50699 * 109.50243 * 182.40286 * 10 9 8 13 13 H 1.08005 * 120.00101 * 119.79670 * 12 10 9 14 14 C 1.37877 * 119.99916 * 299.79875 * 12 10 9 15 15 N 1.31517 * 119.99677 * 180.02562 * 14 12 10 16 16 Si 1.86787 * 120.00058 * 0.02562 * 14 12 10 17 17 H 1.48501 * 109.47696 * 89.99891 * 16 14 12 18 18 H 1.48507 * 109.47051 * 209.99844 * 16 14 12 19 19 H 1.48505 * 109.47333 * 329.99856 * 16 14 12 20 20 C 1.46844 * 111.00118 * 170.00062 * 6 5 4 21 21 C 1.38297 * 120.13209 * 0.25141 * 4 3 2 22 22 C 1.38105 * 120.06457 * 359.49307 * 21 4 3 23 23 C 1.38810 * 120.03151 * 179.97438 * 2 1 3 24 24 N 1.40195 * 120.06855 * 0.05073 * 23 2 1 25 25 C 1.34727 * 126.84239 * 226.85403 * 24 23 2 26 26 N 1.30848 * 108.03228 * 179.83398 * 25 24 23 27 27 C 1.33255 * 109.84455 * 0.44579 * 26 25 24 28 28 N 1.30755 * 108.99829 * 359.72594 * 27 26 25 29 29 H 1.09001 * 109.46779 * 95.33324 * 1 2 3 30 30 H 1.09001 * 109.47471 * 215.32629 * 1 2 3 31 31 H 1.08992 * 109.47312 * 335.33291 * 1 2 3 32 32 H 1.08002 * 119.96725 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.46941 * 329.99516 * 5 4 3 34 34 H 1.09000 * 109.47474 * 210.00025 * 5 4 3 35 35 H 1.08994 * 109.46137 * 65.82323 * 7 6 5 36 36 H 1.09003 * 109.45189 * 305.85080 * 7 6 5 37 37 H 1.09002 * 109.50178 * 180.88416 * 8 7 6 38 38 H 1.09002 * 109.50570 * 60.76084 * 8 7 6 39 39 H 1.08995 * 109.52381 * 297.74945 * 9 8 7 40 40 H 1.09000 * 109.57063 * 177.58896 * 9 8 7 41 41 H 0.97002 * 119.99742 * 180.02562 * 15 14 12 42 42 H 1.09005 * 109.46279 * 54.14576 * 20 6 5 43 43 H 1.08991 * 109.46293 * 294.17391 * 20 6 5 44 44 H 1.08001 * 119.96753 * 179.72662 * 21 4 3 45 45 H 1.08003 * 120.02934 * 180.28131 * 22 21 4 46 46 H 1.08001 * 125.98222 * 0.02562 * 25 24 23 47 47 H 1.08005 * 125.50219 * 179.72253 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1967 0.0005 5 6 4.3322 2.5031 -0.0001 6 7 4.5758 2.9287 1.3847 7 6 5.0655 1.8101 2.2005 8 6 5.1689 2.2503 3.6625 9 6 6.1277 3.4398 3.7656 10 6 5.6206 4.5731 2.8694 11 1 4.6428 4.9044 3.2188 12 6 6.5899 5.7260 2.9194 13 1 7.0747 6.0634 2.0152 14 6 6.8578 6.3500 4.1193 15 7 7.7033 7.3564 4.1627 16 14 6.0199 5.7659 5.6832 17 1 6.8502 4.7169 6.3277 18 1 5.8576 6.9107 6.6151 19 1 4.6854 5.2057 5.3503 20 6 5.5041 4.0655 1.4304 21 6 4.2759 0.0011 -0.0042 22 6 3.5903 -1.1977 0.0011 23 6 2.2017 -1.2017 0.0005 24 7 1.5029 -2.4171 0.0000 25 6 1.7388 -3.4850 0.7869 26 7 0.8692 -4.4136 0.4808 27 6 0.0728 -3.9830 -0.4969 28 7 0.4214 -2.7663 -0.8252 29 1 -0.3633 -0.0955 -1.0232 30 1 -0.3634 -0.8384 0.5942 31 1 -0.3633 0.9338 0.4289 32 1 1.6584 2.1312 -0.0004 33 1 3.7420 3.2614 -0.5147 34 1 5.2850 2.3742 -0.5134 35 1 6.0483 1.5031 1.8432 36 1 4.3724 0.9726 2.1216 37 1 5.5473 1.4247 4.2653 38 1 4.1838 2.5445 4.0247 39 1 7.1223 3.1353 3.4402 40 1 6.1720 3.7846 4.7987 41 1 7.8920 7.7951 5.0070 42 1 5.1297 4.8660 0.7921 43 1 6.4849 3.7479 1.0767 44 1 5.3559 0.0049 -0.0082 45 1 4.1336 -2.1311 0.0020 46 1 2.5086 -3.5601 1.5406 47 1 -0.7310 -4.5478 -0.9458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597173180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:06 Heat of formation + Delta-G solvation = 108.738263 kcal Electronic energy + Delta-G solvation = -27320.352487 eV Core-core repulsion = 23697.244763 eV Total energy + Delta-G solvation = -3623.107724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.28084 -41.00023 -39.59202 -36.34392 -34.88203 -33.90267 -33.64395 -32.28077 -31.96406 -31.00760 -28.09215 -27.33062 -26.80530 -24.74962 -23.69237 -23.35988 -22.80829 -22.32159 -21.24982 -20.44382 -19.16497 -18.81496 -17.35896 -17.27853 -16.61478 -16.38323 -16.15794 -15.98378 -15.37302 -15.27772 -15.13232 -15.02748 -14.86081 -14.75534 -14.63511 -14.18583 -13.95231 -13.74016 -13.48296 -13.39737 -13.11749 -12.91972 -12.71502 -12.63231 -12.46120 -12.20379 -12.04690 -11.88168 -11.72343 -11.42794 -11.30039 -11.13303 -10.98845 -10.87588 -10.78911 -10.59995 -9.85447 -9.51345 -9.09461 -8.29322 -6.32334 -0.21414 0.28192 0.76710 1.26856 1.30478 1.37182 1.47886 1.91591 2.33557 2.46955 3.06929 3.20296 3.41986 3.62169 3.67155 3.71409 3.89472 4.00749 4.04727 4.14435 4.25279 4.29756 4.32349 4.43492 4.49571 4.54872 4.61980 4.67356 4.67968 4.73335 4.83962 4.84572 4.91092 4.98560 5.05940 5.08051 5.13083 5.17014 5.22722 5.28007 5.36715 5.42012 5.47542 5.56603 5.65085 5.68491 5.75361 6.04340 6.17137 6.26511 6.36820 6.75584 7.00539 7.33472 8.87414 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.002540 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.567715 B =11021.517933 C =11290.478565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.074 4.074 3 C -0.090 4.090 4 C -0.063 4.063 5 C 0.090 3.910 6 N -0.541 5.541 7 C 0.062 3.938 8 C -0.115 4.115 9 C -0.122 4.122 10 C 0.020 3.980 11 H 0.023 0.977 12 C -0.517 4.517 13 H 0.035 0.965 14 C 0.012 3.988 15 N -0.951 5.951 16 Si 0.950 3.050 17 H -0.267 1.267 18 H -0.302 1.302 19 H -0.248 1.248 20 C 0.089 3.911 21 C -0.101 4.101 22 C -0.102 4.102 23 C 0.113 3.887 24 N -0.334 5.334 25 C 0.266 3.734 26 N -0.566 5.566 27 C 0.196 3.804 28 N -0.339 5.339 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.032 0.968 41 H 0.265 0.735 42 H 0.062 0.938 43 H 0.022 0.978 44 H 0.146 0.854 45 H 0.153 0.847 46 H 0.253 0.747 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 -23.026 -8.637 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.076 4.076 3 C -0.109 4.109 4 C -0.064 4.064 5 C -0.036 4.036 6 N -0.265 5.265 7 C -0.066 4.066 8 C -0.153 4.153 9 C -0.160 4.160 10 C 0.001 3.999 11 H 0.042 0.958 12 C -0.555 4.555 13 H 0.053 0.947 14 C -0.185 4.185 15 N -0.591 5.591 16 Si 0.778 3.222 17 H -0.194 1.194 18 H -0.230 1.230 19 H -0.172 1.172 20 C -0.039 4.039 21 C -0.120 4.120 22 C -0.122 4.122 23 C 0.022 3.978 24 N -0.118 5.118 25 C -0.029 4.029 26 N -0.293 5.293 27 C -0.106 4.106 28 N -0.165 5.165 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.040 0.960 44 H 0.164 0.836 45 H 0.171 0.829 46 H 0.269 0.731 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -13.793 -22.635 -8.761 27.917 hybrid contribution 1.057 0.381 0.553 1.252 sum -12.736 -22.254 -8.209 26.923 Atomic orbital electron populations 1.20646 0.89923 1.02422 1.02620 1.19928 0.97118 0.91450 0.99128 1.20963 0.93488 0.97413 0.99081 1.19912 0.93824 0.94791 0.97894 1.21136 0.98899 0.93955 0.89642 1.62091 1.47028 1.07385 1.10012 1.22156 0.98547 0.93239 0.92637 1.21637 0.99324 0.97439 0.96893 1.21923 0.98991 0.96595 0.98483 1.19068 0.95216 0.92386 0.93249 0.95840 1.21349 1.24797 1.14979 0.94406 0.94711 1.25831 0.95362 0.94706 1.02554 1.70049 1.37087 1.24523 1.27458 0.85813 0.80683 0.76733 0.78990 1.19361 1.23015 1.17212 1.21795 0.92577 0.92124 0.97402 1.21122 1.00980 0.90549 0.99315 1.21121 0.90645 1.00089 1.00383 1.17450 0.90686 0.82062 1.07577 1.47657 1.24617 1.12163 1.27406 1.26956 0.98679 0.81824 0.95443 1.70649 1.09064 1.31193 1.18351 1.26750 0.99694 0.90657 0.93490 1.78199 1.03899 1.17405 1.16999 0.90679 0.93104 0.90329 0.84264 0.89332 0.93201 0.94701 0.88999 0.90098 0.92259 0.93141 0.94972 0.92649 0.91979 0.96022 0.83582 0.82887 0.73101 0.73739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 8.88 71.24 0.63 -1.16 16 2 C -0.07 -1.42 5.89 -19.75 -0.12 -1.54 16 3 C -0.09 -1.73 9.33 22.25 0.21 -1.52 16 4 C -0.06 -1.21 4.11 -19.85 -0.08 -1.29 16 5 C 0.09 2.05 5.43 85.56 0.46 2.51 16 6 N -0.54 -15.87 4.80 -900.93 -4.32 -20.20 16 7 C 0.06 1.62 4.58 86.33 0.40 2.02 16 8 C -0.12 -3.52 6.09 30.65 0.19 -3.33 16 9 C -0.12 -4.91 4.74 30.68 0.15 -4.77 16 10 C 0.02 0.90 1.85 -11.49 -0.02 0.88 16 11 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 12 C -0.52 -29.02 9.14 25.60 0.23 -28.79 16 13 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 14 C 0.01 0.71 5.45 84.65 0.46 1.17 16 15 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 16 Si 0.95 45.22 24.36 68.60 1.67 46.89 16 17 H -0.27 -12.08 6.89 99.48 0.69 -11.40 16 18 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 19 H -0.25 -11.08 6.53 99.48 0.65 -10.43 16 20 C 0.09 3.31 4.65 86.33 0.40 3.71 16 21 C -0.10 -1.59 7.80 22.25 0.17 -1.41 16 22 C -0.10 -1.48 9.65 22.39 0.22 -1.26 16 23 C 0.11 2.05 6.28 38.09 0.24 2.29 16 24 N -0.33 -6.15 3.14 -191.27 -0.60 -6.75 16 25 C 0.27 4.02 12.31 180.26 2.22 6.24 16 26 N -0.57 -10.36 11.19 -203.72 -2.28 -12.64 16 27 C 0.20 3.32 13.03 180.75 2.35 5.67 16 28 N -0.34 -6.93 11.10 -61.21 -0.68 -7.61 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.02 7.22 -2.39 -0.02 1.00 16 31 H 0.08 1.23 8.05 -2.39 -0.02 1.21 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.09 1.94 8.08 -2.38 -0.02 1.92 16 34 H 0.05 1.08 8.02 -2.39 -0.02 1.06 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 2.04 5.65 -2.39 -0.01 2.02 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.03 1.37 3.36 -2.39 -0.01 1.36 16 41 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.06 2.36 8.12 -2.38 -0.02 2.34 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 45 H 0.15 1.46 8.04 -2.91 -0.02 1.44 16 46 H 0.25 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.25 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -71.07 369.41 3.08 -67.98 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.88 Total: 11.93 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 8.11 Total: -20.56 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -7.58 Total: -106.24 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.89 kcal Total: -71.07 3.08 -67.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.722 kcal (2) G-P(sol) polarization free energy of solvation -71.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds