Wall clock time and date at job start Tue Mar 31 2020 14:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38150 * 120.03334 * 2 1 4 4 C 1.38252 * 120.06340 * 179.72106 * 3 2 1 5 5 C 1.50702 * 119.92907 * 180.27441 * 4 3 2 6 6 N 1.46909 * 109.46983 * 90.00156 * 5 4 3 7 7 C 1.46845 * 111.00078 * 294.20872 * 6 5 4 8 8 C 1.53039 * 109.52226 * 174.15852 * 7 6 5 9 9 C 1.53117 * 109.27591 * 59.18133 * 8 7 6 10 10 C 1.53115 * 109.16434 * 302.34381 * 9 8 7 11 11 H 1.09002 * 109.50265 * 297.71839 * 10 9 8 12 12 C 1.50697 * 109.50877 * 177.59680 * 10 9 8 13 13 H 1.08001 * 120.00338 * 240.19624 * 12 10 9 14 14 C 1.37878 * 119.99903 * 60.19659 * 12 10 9 15 15 N 1.31509 * 119.99968 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99857 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47624 * 59.99909 * 16 14 12 18 18 H 1.48505 * 109.46924 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46974 * 299.99236 * 16 14 12 20 20 C 1.46847 * 110.99843 * 169.99674 * 6 5 4 21 21 C 1.38296 * 120.13859 * 0.29985 * 4 3 2 22 22 C 1.38102 * 120.06439 * 359.97412 * 21 4 3 23 23 C 1.38813 * 120.03605 * 180.27023 * 2 1 3 24 24 N 1.40199 * 120.06420 * 0.02756 * 23 2 1 25 25 C 1.34729 * 126.83719 * 186.39167 * 24 23 2 26 26 N 1.30855 * 108.02945 * 179.97438 * 25 24 23 27 27 C 1.33268 * 109.84246 * 359.97438 * 26 25 24 28 28 N 1.30747 * 108.99695 * 359.71442 * 27 26 25 29 29 H 1.09001 * 109.46787 * 96.55220 * 1 2 3 30 30 H 1.09000 * 109.47073 * 216.55290 * 1 2 3 31 31 H 1.08999 * 109.47226 * 336.55598 * 1 2 3 32 32 H 1.07997 * 119.96683 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47495 * 209.99720 * 5 4 3 34 34 H 1.08998 * 109.47408 * 330.00208 * 5 4 3 35 35 H 1.08998 * 109.46074 * 294.17570 * 7 6 5 36 36 H 1.09002 * 109.46157 * 54.14342 * 7 6 5 37 37 H 1.08990 * 109.50292 * 299.23855 * 8 7 6 38 38 H 1.09000 * 109.52975 * 179.13775 * 8 7 6 39 39 H 1.08999 * 109.52400 * 182.43827 * 9 8 7 40 40 H 1.09000 * 109.57613 * 62.27829 * 9 8 7 41 41 H 0.97004 * 119.99971 * 180.02562 * 15 14 12 42 42 H 1.08996 * 109.46506 * 305.85789 * 20 6 5 43 43 H 1.09004 * 109.46306 * 65.82785 * 20 6 5 44 44 H 1.08000 * 119.97299 * 179.97438 * 21 4 3 45 45 H 1.07998 * 120.03469 * 179.97438 * 22 21 4 46 46 H 1.07999 * 125.98915 * 359.95831 * 25 24 23 47 47 H 1.07993 * 125.49839 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5809 1.1967 0.0058 5 6 4.3321 2.5032 0.0121 6 7 4.5704 2.9244 1.3992 7 6 3.3068 3.2386 2.0782 8 6 3.5791 3.5313 3.5554 9 6 4.5474 4.7123 3.6666 10 6 5.8362 4.3785 2.9104 11 1 6.3140 3.5132 3.3698 12 6 6.7717 5.5587 2.9649 13 1 7.0936 6.0353 2.0508 14 6 7.2167 6.0300 4.1818 15 7 6.8243 5.4500 5.2950 16 14 8.3757 7.4934 4.2494 17 1 7.7222 8.6718 3.6256 18 1 8.7025 7.8010 5.6651 19 1 9.6236 7.1710 3.5117 20 6 5.4986 4.0611 1.4519 21 6 4.2760 0.0011 0.0054 22 6 3.5903 -1.1977 -0.0003 23 6 2.2018 -1.2017 -0.0057 24 7 1.5029 -2.4171 -0.0120 25 6 2.0292 -3.6521 0.1022 26 7 1.0482 -4.5166 0.0510 27 6 -0.1117 -3.8766 -0.0937 28 7 0.1142 -2.5894 -0.1309 29 1 -0.3633 -0.1173 -1.0210 30 1 -0.3633 -0.8255 0.6120 31 1 -0.3634 0.9428 0.4089 32 1 1.6584 2.1313 0.0004 33 1 5.2870 2.3758 -0.4980 34 1 3.7439 3.2630 -0.5024 35 1 2.8520 4.1129 1.6125 36 1 2.6289 2.3891 1.9952 37 1 4.0213 2.6528 4.0249 38 1 2.6433 3.7796 4.0562 39 1 4.7780 4.8967 4.7158 40 1 4.0902 5.6015 3.2324 41 1 7.1371 5.7818 6.1512 42 1 6.4125 3.8090 0.9140 43 1 5.0334 4.9316 0.9891 44 1 5.3559 0.0048 0.0095 45 1 4.1336 -2.1311 -0.0010 46 1 3.0771 -3.8874 0.2157 47 1 -1.0820 -4.3454 -0.1642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597173192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:10 Heat of formation + Delta-G solvation = 122.271464 kcal Electronic energy + Delta-G solvation = -27168.732678 eV Core-core repulsion = 23546.211798 eV Total energy + Delta-G solvation = -3622.520880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.60212 -39.91428 -38.08904 -35.03964 -33.46896 -33.11796 -31.93495 -31.38510 -30.21633 -29.50170 -27.20561 -26.08218 -24.95536 -23.65008 -22.88359 -21.99291 -21.53615 -21.28104 -20.22654 -18.64488 -18.39092 -16.45690 -16.25290 -16.11156 -15.52221 -15.38243 -15.13753 -14.58635 -14.36192 -14.15284 -14.04180 -13.74329 -13.38394 -13.34834 -13.07075 -13.02547 -12.60245 -12.47226 -12.22940 -11.91071 -11.83786 -11.52434 -11.20224 -11.08579 -10.95644 -10.92084 -10.68922 -10.66577 -10.28818 -10.13447 -10.10913 -9.86195 -9.49774 -9.10495 -8.97923 -8.73687 -8.38658 -8.31766 -7.72982 -5.99217 -4.05740 0.49872 1.13457 1.76000 1.92909 2.60304 3.30519 3.35644 3.37515 3.47957 3.94742 4.14741 4.38583 4.50036 4.55072 4.60964 4.70667 4.77510 5.13761 5.16418 5.28182 5.30812 5.45218 5.47727 5.62190 5.63584 5.70950 5.77514 5.80190 5.82688 5.96839 6.04369 6.08694 6.21067 6.23506 6.31123 6.34464 6.46544 6.48000 6.50016 6.69168 6.72169 6.83368 6.92628 7.19011 7.35983 7.60186 7.69766 7.71205 7.76204 8.05590 8.15278 8.45383 8.98138 9.58649 11.06698 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.002328 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.819082 B =12026.602756 C =12115.495726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.096 4.096 4 C -0.056 4.056 5 C 0.088 3.912 6 N -0.532 5.532 7 C 0.059 3.941 8 C -0.117 4.117 9 C -0.111 4.111 10 C 0.056 3.944 11 H 0.034 0.966 12 C -0.516 4.516 13 H 0.053 0.947 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.068 3.932 21 C -0.080 4.080 22 C -0.126 4.126 23 C 0.127 3.873 24 N -0.317 5.317 25 C 0.256 3.744 26 N -0.540 5.540 27 C 0.194 3.806 28 N -0.310 5.310 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.260 0.740 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.221 0.779 47 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.039 -14.495 -11.704 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 C -0.115 4.115 4 C -0.058 4.058 5 C -0.040 4.040 6 N -0.256 5.256 7 C -0.069 4.069 8 C -0.155 4.155 9 C -0.149 4.149 10 C 0.037 3.963 11 H 0.053 0.947 12 C -0.555 4.555 13 H 0.071 0.929 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.059 4.059 21 C -0.099 4.099 22 C -0.147 4.147 23 C 0.034 3.966 24 N -0.100 5.100 25 C -0.039 4.039 26 N -0.267 5.267 27 C -0.107 4.107 28 N -0.136 5.136 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.156 0.844 45 H 0.148 0.852 46 H 0.237 0.763 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.336 -14.688 -11.309 21.729 hybrid contribution 0.486 1.494 -0.280 1.596 sum -10.850 -13.194 -11.589 20.643 Atomic orbital electron populations 1.21004 0.89736 1.03048 1.03073 1.19657 0.97020 0.90770 1.00068 1.20936 0.93653 0.97013 0.99923 1.20015 0.93246 0.95691 0.96802 1.21078 0.99148 0.92073 0.91717 1.62053 1.12851 1.38681 1.12023 1.22124 0.90663 0.97994 0.96083 1.21663 0.99203 1.00855 0.93734 1.21658 0.95034 0.93703 1.04505 1.18652 0.92933 0.96557 0.88127 0.94749 1.21100 1.27538 1.14519 0.92334 0.92893 1.24932 0.96267 0.96841 0.95769 1.69880 1.44444 1.40899 0.97438 0.86692 0.81440 0.83123 0.76910 1.20397 1.21322 1.20291 1.22347 0.93496 0.88518 1.01527 1.20868 1.00491 0.90407 0.98174 1.20754 0.90591 0.99650 1.03658 1.17431 0.90343 0.82238 1.06543 1.47737 1.05054 1.05933 1.51318 1.26178 1.01057 0.80135 0.96501 1.70617 0.98299 1.33527 1.24208 1.26232 0.98648 0.88021 0.97831 1.78275 0.90320 1.18765 1.26243 0.91138 0.89189 0.92094 0.85230 0.89872 0.94342 0.95949 0.92063 0.92156 0.93604 0.89136 0.95183 0.92977 0.92131 0.96184 0.84446 0.85187 0.76258 0.76384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 8.73 36.00 0.31 -0.87 16 2 C -0.07 -0.85 5.90 -104.44 -0.62 -1.47 16 3 C -0.10 -1.12 7.49 -39.61 -0.30 -1.42 16 4 C -0.06 -0.69 4.89 -104.59 -0.51 -1.20 16 5 C 0.09 1.19 5.12 -4.97 -0.03 1.16 16 6 N -0.53 -9.17 4.65 -236.10 -1.10 -10.27 16 7 C 0.06 1.00 5.15 -3.83 -0.02 0.98 16 8 C -0.12 -2.25 6.09 -26.65 -0.16 -2.42 16 9 C -0.11 -2.58 5.03 -26.61 -0.13 -2.71 16 10 C 0.06 1.36 2.26 -91.69 -0.21 1.16 16 11 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.52 -13.83 8.56 -34.44 -0.29 -14.13 16 13 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.04 11.36 55.43 0.63 -24.41 16 16 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.07 1.36 4.68 -3.83 -0.02 1.35 16 21 C -0.08 -0.87 9.69 -39.61 -0.38 -1.25 16 22 C -0.13 -1.23 9.48 -39.40 -0.37 -1.60 16 23 C 0.13 1.43 6.67 -83.59 -0.56 0.87 16 24 N -0.32 -3.49 3.80 -11.80 -0.04 -3.54 16 25 C 0.26 2.39 11.97 -90.36 -1.08 1.31 16 26 N -0.54 -5.72 11.19 -15.74 -0.18 -5.90 16 27 C 0.19 1.87 13.03 -91.76 -1.20 0.68 16 28 N -0.31 -3.47 8.88 29.30 0.26 -3.21 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.03 5.77 -51.93 -0.30 0.73 16 31 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 32 H 0.13 1.41 7.95 -52.49 -0.42 0.99 16 33 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 34 H 0.04 0.51 8.07 -51.93 -0.42 0.09 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.94 5.75 -51.93 -0.30 0.64 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 2.37 6.16 -51.93 -0.32 2.05 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.06 1.19 8.01 -51.93 -0.42 0.77 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.13 0.87 6.85 -52.49 -0.36 0.51 16 46 H 0.22 1.15 7.14 -52.49 -0.37 0.77 16 47 H 0.22 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -30.64 371.62 -12.59 -43.23 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.08 Total: 0.49 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -5.66 Total: -17.93 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.43 Total: -47.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.64 -12.59 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.504 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds