Wall clock time and date at job start Tue Mar 31 2020 14:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38150 * 120.03334 * 2 1 4 4 C 1.38252 * 120.06340 * 179.72106 * 3 2 1 5 5 C 1.50702 * 119.92907 * 180.27441 * 4 3 2 6 6 N 1.46909 * 109.46983 * 90.00156 * 5 4 3 7 7 C 1.46845 * 111.00078 * 294.20872 * 6 5 4 8 8 C 1.53039 * 109.52226 * 174.15852 * 7 6 5 9 9 C 1.53117 * 109.27591 * 59.18133 * 8 7 6 10 10 C 1.53115 * 109.16434 * 302.34381 * 9 8 7 11 11 H 1.09002 * 109.50265 * 297.71839 * 10 9 8 12 12 C 1.50697 * 109.50877 * 177.59680 * 10 9 8 13 13 H 1.08001 * 120.00338 * 240.19624 * 12 10 9 14 14 C 1.37878 * 119.99903 * 60.19659 * 12 10 9 15 15 N 1.31509 * 119.99968 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99857 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47624 * 59.99909 * 16 14 12 18 18 H 1.48505 * 109.46924 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46974 * 299.99236 * 16 14 12 20 20 C 1.46847 * 110.99843 * 169.99674 * 6 5 4 21 21 C 1.38296 * 120.13859 * 0.29985 * 4 3 2 22 22 C 1.38102 * 120.06439 * 359.97412 * 21 4 3 23 23 C 1.38813 * 120.03605 * 180.27023 * 2 1 3 24 24 N 1.40199 * 120.06420 * 0.02756 * 23 2 1 25 25 C 1.34729 * 126.83719 * 186.39167 * 24 23 2 26 26 N 1.30855 * 108.02945 * 179.97438 * 25 24 23 27 27 C 1.33268 * 109.84246 * 359.97438 * 26 25 24 28 28 N 1.30747 * 108.99695 * 359.71442 * 27 26 25 29 29 H 1.09001 * 109.46787 * 96.55220 * 1 2 3 30 30 H 1.09000 * 109.47073 * 216.55290 * 1 2 3 31 31 H 1.08999 * 109.47226 * 336.55598 * 1 2 3 32 32 H 1.07997 * 119.96683 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47495 * 209.99720 * 5 4 3 34 34 H 1.08998 * 109.47408 * 330.00208 * 5 4 3 35 35 H 1.08998 * 109.46074 * 294.17570 * 7 6 5 36 36 H 1.09002 * 109.46157 * 54.14342 * 7 6 5 37 37 H 1.08990 * 109.50292 * 299.23855 * 8 7 6 38 38 H 1.09000 * 109.52975 * 179.13775 * 8 7 6 39 39 H 1.08999 * 109.52400 * 182.43827 * 9 8 7 40 40 H 1.09000 * 109.57613 * 62.27829 * 9 8 7 41 41 H 0.97004 * 119.99971 * 180.02562 * 15 14 12 42 42 H 1.08996 * 109.46506 * 305.85789 * 20 6 5 43 43 H 1.09004 * 109.46306 * 65.82785 * 20 6 5 44 44 H 1.08000 * 119.97299 * 179.97438 * 21 4 3 45 45 H 1.07998 * 120.03469 * 179.97438 * 22 21 4 46 46 H 1.07999 * 125.98915 * 359.95831 * 25 24 23 47 47 H 1.07993 * 125.49839 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5809 1.1967 0.0058 5 6 4.3321 2.5032 0.0121 6 7 4.5704 2.9244 1.3992 7 6 3.3068 3.2386 2.0782 8 6 3.5791 3.5313 3.5554 9 6 4.5474 4.7123 3.6666 10 6 5.8362 4.3785 2.9104 11 1 6.3140 3.5132 3.3698 12 6 6.7717 5.5587 2.9649 13 1 7.0936 6.0353 2.0508 14 6 7.2167 6.0300 4.1818 15 7 6.8243 5.4500 5.2950 16 14 8.3757 7.4934 4.2494 17 1 7.7222 8.6718 3.6256 18 1 8.7025 7.8010 5.6651 19 1 9.6236 7.1710 3.5117 20 6 5.4986 4.0611 1.4519 21 6 4.2760 0.0011 0.0054 22 6 3.5903 -1.1977 -0.0003 23 6 2.2018 -1.2017 -0.0057 24 7 1.5029 -2.4171 -0.0120 25 6 2.0292 -3.6521 0.1022 26 7 1.0482 -4.5166 0.0510 27 6 -0.1117 -3.8766 -0.0937 28 7 0.1142 -2.5894 -0.1309 29 1 -0.3633 -0.1173 -1.0210 30 1 -0.3633 -0.8255 0.6120 31 1 -0.3634 0.9428 0.4089 32 1 1.6584 2.1313 0.0004 33 1 5.2870 2.3758 -0.4980 34 1 3.7439 3.2630 -0.5024 35 1 2.8520 4.1129 1.6125 36 1 2.6289 2.3891 1.9952 37 1 4.0213 2.6528 4.0249 38 1 2.6433 3.7796 4.0562 39 1 4.7780 4.8967 4.7158 40 1 4.0902 5.6015 3.2324 41 1 7.1371 5.7818 6.1512 42 1 6.4125 3.8090 0.9140 43 1 5.0334 4.9316 0.9891 44 1 5.3559 0.0048 0.0095 45 1 4.1336 -2.1311 -0.0010 46 1 3.0771 -3.8874 0.2157 47 1 -1.0820 -4.3454 -0.1642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597173192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:09 Heat of formation + Delta-G solvation = 108.368776 kcal Electronic energy + Delta-G solvation = -27169.335544 eV Core-core repulsion = 23546.211798 eV Total energy + Delta-G solvation = -3623.123746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.33049 -40.83805 -39.48485 -36.23633 -34.93902 -33.94749 -33.41197 -32.20707 -31.74928 -30.74220 -28.06126 -27.13976 -26.88450 -24.58516 -23.77709 -23.40242 -22.93918 -22.05425 -21.24370 -20.32662 -19.15819 -18.41163 -17.02795 -16.93970 -16.81594 -16.41011 -16.24774 -16.19501 -15.41636 -15.12504 -15.05387 -14.85927 -14.63790 -14.51443 -14.34891 -14.12578 -13.96493 -13.81065 -13.40425 -13.13757 -12.96493 -12.83075 -12.71917 -12.56422 -12.53352 -12.04727 -11.95750 -11.89440 -11.69849 -11.64409 -11.36093 -11.03578 -10.86856 -10.84987 -10.65282 -10.36320 -9.79762 -9.28198 -9.05572 -8.06364 -6.20384 -0.28665 0.32395 0.98250 1.20686 1.43020 1.43814 1.51355 1.89716 2.43547 2.61574 3.20844 3.28278 3.37881 3.42552 3.75507 3.78903 3.90281 3.98576 4.19448 4.23613 4.32174 4.35837 4.42388 4.54168 4.58144 4.64720 4.68738 4.72479 4.79355 4.81422 4.90949 4.93883 4.99909 5.04813 5.10469 5.19519 5.20753 5.28489 5.39313 5.42194 5.52920 5.54946 5.63082 5.65110 5.71117 5.97651 6.06243 6.13681 6.22558 6.34325 6.47354 6.92885 6.98077 7.47585 8.98020 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.002328 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.819082 B =12026.602756 C =12115.495726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.088 4.088 3 C -0.100 4.100 4 C -0.070 4.070 5 C 0.091 3.909 6 N -0.540 5.540 7 C 0.067 3.933 8 C -0.111 4.111 9 C -0.104 4.104 10 C 0.053 3.947 11 H -0.003 1.003 12 C -0.535 4.535 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.916 5.916 16 Si 0.953 3.047 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.270 1.270 20 C 0.082 3.918 21 C -0.084 4.084 22 C -0.119 4.119 23 C 0.120 3.880 24 N -0.330 5.330 25 C 0.260 3.740 26 N -0.563 5.563 27 C 0.194 3.806 28 N -0.336 5.336 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.259 0.741 42 H 0.064 0.936 43 H 0.017 0.983 44 H 0.149 0.851 45 H 0.163 0.837 46 H 0.257 0.743 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 -15.455 -13.027 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.071 4.071 5 C -0.036 4.036 6 N -0.264 5.264 7 C -0.061 4.061 8 C -0.148 4.148 9 C -0.142 4.142 10 C 0.035 3.965 11 H 0.015 0.985 12 C -0.573 4.573 13 H 0.072 0.928 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.046 4.046 21 C -0.103 4.103 22 C -0.140 4.140 23 C 0.028 3.972 24 N -0.113 5.113 25 C -0.034 4.034 26 N -0.289 5.289 27 C -0.107 4.107 28 N -0.162 5.162 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.035 0.965 44 H 0.167 0.833 45 H 0.181 0.819 46 H 0.273 0.727 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -11.506 -15.654 -12.652 23.185 hybrid contribution 0.509 1.681 0.125 1.761 sum -10.998 -13.973 -12.528 21.751 Atomic orbital electron populations 1.20927 0.89406 1.03016 1.02836 1.19820 0.97473 0.91124 1.00640 1.20979 0.93578 0.97320 1.00006 1.19924 0.93380 0.95378 0.98465 1.21094 1.00161 0.92998 0.89330 1.61950 1.12672 1.37030 1.14783 1.22049 0.90896 0.99076 0.94083 1.21571 0.98796 0.98429 0.96043 1.21464 0.95655 0.95119 1.01979 1.18573 0.92778 0.94304 0.90877 0.98458 1.21509 1.28081 1.15320 0.92438 0.92826 1.25718 0.97852 0.99468 0.95511 1.70033 1.45490 1.42255 0.97798 0.85699 0.79602 0.79975 0.76885 1.19743 1.21190 1.19522 1.22002 0.94563 0.89649 0.98337 1.21073 1.01174 0.90371 0.97683 1.21057 0.90104 1.00675 1.02138 1.17662 0.91060 0.82353 1.06175 1.47795 1.05137 1.06262 1.52108 1.26959 1.02398 0.79360 0.94732 1.70662 0.98932 1.34167 1.25163 1.26890 0.99683 0.87692 0.96429 1.78247 0.90883 1.19667 1.27391 0.91263 0.90128 0.91368 0.84740 0.88904 0.93638 0.95468 0.89923 0.93420 0.91714 0.92600 0.95908 0.93146 0.91789 0.96454 0.83320 0.81941 0.72746 0.73545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 8.73 71.24 0.62 -1.50 16 2 C -0.09 -1.93 5.90 -19.75 -0.12 -2.04 16 3 C -0.10 -2.16 7.49 22.25 0.17 -1.99 16 4 C -0.07 -1.57 4.89 -19.85 -0.10 -1.67 16 5 C 0.09 2.30 5.12 85.56 0.44 2.74 16 6 N -0.54 -18.02 4.65 -900.90 -4.19 -22.20 16 7 C 0.07 2.17 5.15 86.33 0.44 2.61 16 8 C -0.11 -4.25 6.09 30.65 0.19 -4.06 16 9 C -0.10 -4.95 5.03 30.67 0.15 -4.80 16 10 C 0.05 2.67 2.26 -11.49 -0.03 2.64 16 11 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 12 C -0.53 -29.17 8.56 25.60 0.22 -28.95 16 13 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 14 C 0.01 0.73 5.30 84.66 0.45 1.18 16 15 N -0.92 -53.13 11.36 21.45 0.24 -52.89 16 16 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 C 0.08 3.28 4.68 86.33 0.40 3.68 16 21 C -0.08 -1.62 9.69 22.25 0.22 -1.40 16 22 C -0.12 -1.99 9.48 22.39 0.21 -1.78 16 23 C 0.12 2.46 6.67 38.09 0.25 2.72 16 24 N -0.33 -6.65 3.80 -191.26 -0.73 -7.37 16 25 C 0.26 4.21 11.97 180.26 2.16 6.37 16 26 N -0.56 -10.84 11.19 -203.73 -2.28 -13.12 16 27 C 0.19 3.44 13.03 180.75 2.35 5.80 16 28 N -0.34 -7.12 8.88 -61.22 -0.54 -7.66 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.80 5.77 -2.39 -0.01 1.78 16 31 H 0.07 1.22 8.04 -2.39 -0.02 1.20 16 32 H 0.13 2.68 7.95 -2.91 -0.02 2.66 16 33 H 0.09 2.15 7.93 -2.39 -0.02 2.13 16 34 H 0.05 1.10 8.07 -2.39 -0.02 1.08 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 2.37 5.75 -2.39 -0.01 2.36 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 3.04 6.16 -2.39 -0.01 3.02 16 40 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.06 2.48 8.01 -2.39 -0.02 2.46 16 43 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.16 1.52 6.85 -2.91 -0.02 1.50 16 46 H 0.26 1.74 7.14 -2.91 -0.02 1.72 16 47 H 0.25 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -67.53 371.62 3.54 -64.00 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.96 Total: 14.39 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 8.04 Total: -20.47 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -7.49 Total: -103.24 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -67.53 3.54 -64.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.364 kcal (2) G-P(sol) polarization free energy of solvation -67.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds