Wall clock time and date at job start Tue Mar 31 2020 14:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48510 * 109.47091 * 269.99815 * 3 2 1 5 5 H 1.48506 * 109.47098 * 29.99414 * 3 2 1 6 6 H 1.48500 * 109.47282 * 149.99845 * 3 2 1 7 7 C 1.37875 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00620 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99676 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.50363 * 60.08290 * 9 7 2 11 11 C 1.53118 * 109.50776 * 300.00462 * 9 7 2 12 12 C 1.53110 * 109.16369 * 182.36447 * 11 9 7 13 13 C 1.53037 * 109.28207 * 57.65148 * 12 11 9 14 14 N 1.46846 * 109.52189 * 300.82533 * 13 12 11 15 15 C 1.46902 * 111.00100 * 185.83442 * 14 13 12 16 16 C 1.50703 * 109.46727 * 68.58829 * 15 14 13 17 17 C 1.35349 * 126.91455 * 265.88120 * 16 15 14 18 18 N 1.33774 * 106.49650 * 179.97438 * 17 16 15 19 19 N 1.28635 * 108.88672 * 359.73622 * 18 17 16 20 20 N 1.28723 * 110.17356 * 0.44152 * 19 18 17 21 21 C 1.46503 * 125.86225 * 179.82178 * 20 19 18 22 22 C 1.50706 * 109.47139 * 275.19063 * 21 20 19 23 23 C 1.38236 * 119.99284 * 84.54396 * 22 21 20 24 24 C 1.38238 * 119.99620 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00107 * 359.97438 * 24 23 22 26 26 C 1.38242 * 119.99956 * 0.02562 * 25 24 23 27 27 C 1.38230 * 120.00072 * 264.49867 * 22 21 20 28 28 C 1.46845 * 111.19740 * 61.73778 * 14 13 12 29 29 H 0.96997 * 119.99932 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.52202 * 62.45625 * 11 9 7 31 31 H 1.08999 * 109.57615 * 302.30356 * 11 9 7 32 32 H 1.09003 * 109.50572 * 297.71025 * 12 11 9 33 33 H 1.09001 * 109.50642 * 177.59434 * 12 11 9 34 34 H 1.09000 * 109.46737 * 180.80478 * 13 12 11 35 35 H 1.09003 * 109.45916 * 60.83276 * 13 12 11 36 36 H 1.09002 * 109.46869 * 308.59447 * 15 14 13 37 37 H 1.08997 * 109.47522 * 188.59500 * 15 14 13 38 38 H 1.07997 * 126.75205 * 359.95874 * 17 16 15 39 39 H 1.09001 * 109.46793 * 155.19439 * 21 20 19 40 40 H 1.08998 * 109.47565 * 35.19688 * 21 20 19 41 41 H 1.08001 * 120.00418 * 0.25753 * 23 22 21 42 42 H 1.07997 * 120.00105 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.00316 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.99925 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.00255 * 0.06864 * 27 22 21 46 46 H 1.09000 * 109.46591 * 58.27818 * 28 14 13 47 47 H 1.09002 * 109.46091 * 178.24170 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6250 -2.5587 -0.8886 11 6 0.3709 -2.5802 1.2520 12 6 -0.3454 -3.9332 1.2754 13 6 0.6940 -5.0560 1.2433 14 7 1.5099 -4.9348 0.0284 15 6 2.4268 -6.0747 -0.1058 16 6 1.6355 -7.3245 -0.3941 17 6 1.1914 -8.2315 0.5071 18 7 0.5401 -9.1704 -0.1884 19 7 0.5736 -8.8623 -1.4368 20 7 1.2256 -7.7653 -1.6059 21 6 1.4755 -7.1045 -2.8894 22 6 2.6967 -7.7068 -3.5351 23 6 2.5818 -8.8586 -4.2909 24 6 3.7019 -9.4108 -4.8837 25 6 4.9367 -8.8110 -4.7212 26 6 5.0515 -7.6592 -3.9654 27 6 3.9315 -7.1071 -3.3725 28 6 2.2443 -3.6634 0.0067 29 1 -0.4850 0.8400 -0.0004 30 1 -0.3666 -1.7778 1.2309 31 1 0.9915 -2.4812 2.1426 32 1 -0.9967 -4.0153 0.4052 33 1 -0.9406 -4.0142 2.1849 34 1 0.1867 -6.0208 1.2455 35 1 1.3362 -4.9815 2.1210 36 1 2.9844 -6.2037 0.8219 37 1 3.1217 -5.8877 -0.9244 38 1 1.3348 -8.2029 1.5771 39 1 1.6398 -6.0397 -2.7238 40 1 0.6139 -7.2419 -3.5427 41 1 1.6163 -9.3244 -4.4221 42 1 3.6121 -10.3104 -5.4746 43 1 5.8118 -9.2427 -5.1840 44 1 6.0163 -7.1909 -3.8381 45 1 4.0212 -6.2075 -2.7817 46 1 2.8792 -3.5955 0.8900 47 1 2.8630 -3.6167 -0.8895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:51 Heat of formation + Delta-G solvation = 120.229193 kcal Electronic energy + Delta-G solvation = -27761.293139 eV Core-core repulsion = 24138.683699 eV Total energy + Delta-G solvation = -3622.609440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.16260 -39.51177 -38.33731 -35.13566 -34.19968 -32.29319 -31.52262 -31.19192 -30.69484 -29.78927 -27.16677 -26.07373 -25.01411 -23.04378 -22.56946 -22.32693 -21.82200 -21.52719 -20.13747 -18.69631 -17.53563 -17.04836 -16.43875 -16.25225 -15.56024 -15.32700 -15.07892 -14.68413 -14.54813 -14.32066 -13.92752 -13.72598 -13.49371 -13.37108 -13.05496 -12.80028 -12.61884 -12.51658 -12.32122 -11.97591 -11.64780 -11.57900 -11.43587 -11.24638 -11.00878 -10.81672 -10.74847 -10.62457 -10.19142 -10.00264 -9.90616 -9.55826 -9.22869 -9.20457 -9.18338 -8.97843 -8.78289 -8.36883 -7.87966 -6.03370 -4.10309 0.87246 1.12191 1.69257 2.51484 2.69373 3.26411 3.33933 3.35957 3.55197 4.26671 4.31963 4.35043 4.44875 4.51308 4.70757 4.77605 4.82728 5.00138 5.06095 5.14708 5.25888 5.26913 5.29039 5.48790 5.55679 5.63461 5.67549 5.71859 5.76772 5.92395 6.00620 6.14211 6.16991 6.21782 6.22807 6.27361 6.29831 6.40671 6.63941 6.65353 6.67314 6.69365 6.84502 7.13087 7.28556 7.50117 7.61473 7.70480 7.99240 8.10605 8.39894 8.64075 8.93648 9.54620 11.02398 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013191 B = 0.003381 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.087055 B = 8279.255500 C = 9805.298773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.057 3.943 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.061 3.939 14 N -0.536 5.536 15 C 0.119 3.881 16 C 0.012 3.988 17 C -0.055 4.055 18 N -0.274 5.274 19 N -0.092 5.092 20 N -0.272 5.272 21 C 0.155 3.845 22 C -0.117 4.117 23 C -0.089 4.089 24 C -0.125 4.125 25 C -0.109 4.109 26 C -0.123 4.123 27 C -0.095 4.095 28 C 0.068 3.932 29 H 0.260 0.740 30 H 0.091 0.909 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.183 0.817 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.024 0.976 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 -15.633 -6.039 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.038 3.962 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.261 5.261 15 C -0.011 4.011 16 C -0.121 4.121 17 C -0.213 4.213 18 N -0.139 5.139 19 N -0.071 5.071 20 N -0.065 5.065 21 C 0.034 3.966 22 C -0.118 4.118 23 C -0.108 4.108 24 C -0.143 4.143 25 C -0.127 4.127 26 C -0.141 4.141 27 C -0.113 4.113 28 C -0.059 4.059 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.200 0.800 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.042 0.958 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.015 -16.646 -7.141 19.086 hybrid contribution 1.616 1.857 1.165 2.724 sum 7.631 -14.789 -5.976 17.682 Atomic orbital electron populations 1.69886 1.05852 1.26417 1.50381 1.24928 0.94813 0.98972 0.95044 0.86637 0.79858 0.83637 0.78088 1.20701 1.21260 1.19996 1.21114 0.92792 0.90593 1.51067 0.92820 1.18646 0.92507 0.90111 0.94907 0.94844 1.21664 1.00076 0.94751 0.98450 1.21659 0.97138 0.96329 1.00270 1.22096 0.95677 0.99219 0.89706 1.62040 1.23459 1.01531 1.39069 1.20522 0.92629 0.86330 1.01573 1.22140 1.04818 1.00049 0.85094 1.23270 1.03431 0.93623 1.00968 1.75030 1.18151 1.23635 0.97128 1.78215 1.14494 1.00739 1.13640 1.47215 1.34691 1.16895 1.07725 1.20976 0.97356 0.97641 0.80606 1.19850 0.94390 0.97326 1.00274 1.21139 0.99301 0.94512 0.95816 1.21169 0.92668 1.00200 1.00233 1.21259 0.97637 0.95688 0.98154 1.21182 0.98678 0.96357 0.97856 1.21187 0.91861 0.99715 0.98552 1.22363 0.96548 0.87977 0.98976 0.92993 0.89072 0.95057 0.92290 0.93407 0.92073 0.95456 0.92213 0.89920 0.79965 0.85899 0.86943 0.85497 0.85780 0.85902 0.85605 0.85439 0.95818 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 11.35 55.43 0.63 -23.89 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.42 8.57 -34.44 -0.30 -13.71 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.06 1.33 2.26 -91.69 -0.21 1.13 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.11 -2.51 5.02 -26.61 -0.13 -2.65 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C 0.06 1.00 5.30 -3.83 -0.02 0.98 16 14 N -0.54 -8.73 4.63 -236.12 -1.09 -9.82 16 15 C 0.12 1.57 4.93 -4.97 -0.02 1.55 16 16 C 0.01 0.17 5.84 -82.09 -0.48 -0.31 16 17 C -0.05 -0.78 10.85 -17.74 -0.19 -0.97 16 18 N -0.27 -4.46 12.41 30.23 0.38 -4.08 16 19 N -0.09 -1.44 13.17 60.35 0.79 -0.65 16 20 N -0.27 -3.73 3.32 -58.21 -0.19 -3.92 16 21 C 0.15 1.72 6.28 -5.19 -0.03 1.69 16 22 C -0.12 -1.22 5.46 -104.62 -0.57 -1.79 16 23 C -0.09 -0.88 9.72 -39.58 -0.38 -1.27 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 25 C -0.11 -0.92 10.05 -39.58 -0.40 -1.31 16 26 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 27 C -0.09 -0.93 9.68 -39.58 -0.38 -1.32 16 28 C 0.07 1.28 4.68 -3.84 -0.02 1.26 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.09 2.34 6.15 -51.93 -0.32 2.02 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.96 6.33 -51.93 -0.33 0.63 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.08 0.97 6.49 -51.93 -0.34 0.64 16 38 H 0.18 2.10 8.06 -52.49 -0.42 1.67 16 39 H 0.12 1.36 7.47 -51.93 -0.39 0.97 16 40 H 0.11 1.11 8.12 -51.93 -0.42 0.69 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.16 6.88 -52.49 -0.36 0.80 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.07 7.99 -51.93 -0.41 0.66 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -29.76 378.59 -10.18 -39.94 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.18 Total: 1.67 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -4.19 Total: -20.46 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.51 Total: -42.36 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.76 -10.18 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.170 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds