Wall clock time and date at job start Tue Mar 31 2020 14:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48510 * 109.47091 * 269.99815 * 3 2 1 5 5 H 1.48506 * 109.47098 * 29.99414 * 3 2 1 6 6 H 1.48500 * 109.47282 * 149.99845 * 3 2 1 7 7 C 1.37875 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00620 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99676 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.50363 * 60.08290 * 9 7 2 11 11 C 1.53118 * 109.50776 * 300.00462 * 9 7 2 12 12 C 1.53110 * 109.16369 * 182.36447 * 11 9 7 13 13 C 1.53037 * 109.28207 * 57.65148 * 12 11 9 14 14 N 1.46846 * 109.52189 * 300.82533 * 13 12 11 15 15 C 1.46902 * 111.00100 * 185.83442 * 14 13 12 16 16 C 1.50703 * 109.46727 * 68.58829 * 15 14 13 17 17 C 1.35349 * 126.91455 * 265.88120 * 16 15 14 18 18 N 1.33774 * 106.49650 * 179.97438 * 17 16 15 19 19 N 1.28635 * 108.88672 * 359.73622 * 18 17 16 20 20 N 1.28723 * 110.17356 * 0.44152 * 19 18 17 21 21 C 1.46503 * 125.86225 * 179.82178 * 20 19 18 22 22 C 1.50706 * 109.47139 * 275.19063 * 21 20 19 23 23 C 1.38236 * 119.99284 * 84.54396 * 22 21 20 24 24 C 1.38238 * 119.99620 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00107 * 359.97438 * 24 23 22 26 26 C 1.38242 * 119.99956 * 0.02562 * 25 24 23 27 27 C 1.38230 * 120.00072 * 264.49867 * 22 21 20 28 28 C 1.46845 * 111.19740 * 61.73778 * 14 13 12 29 29 H 0.96997 * 119.99932 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.52202 * 62.45625 * 11 9 7 31 31 H 1.08999 * 109.57615 * 302.30356 * 11 9 7 32 32 H 1.09003 * 109.50572 * 297.71025 * 12 11 9 33 33 H 1.09001 * 109.50642 * 177.59434 * 12 11 9 34 34 H 1.09000 * 109.46737 * 180.80478 * 13 12 11 35 35 H 1.09003 * 109.45916 * 60.83276 * 13 12 11 36 36 H 1.09002 * 109.46869 * 308.59447 * 15 14 13 37 37 H 1.08997 * 109.47522 * 188.59500 * 15 14 13 38 38 H 1.07997 * 126.75205 * 359.95874 * 17 16 15 39 39 H 1.09001 * 109.46793 * 155.19439 * 21 20 19 40 40 H 1.08998 * 109.47565 * 35.19688 * 21 20 19 41 41 H 1.08001 * 120.00418 * 0.25753 * 23 22 21 42 42 H 1.07997 * 120.00105 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.00316 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.99925 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.00255 * 0.06864 * 27 22 21 46 46 H 1.09000 * 109.46591 * 58.27818 * 28 14 13 47 47 H 1.09002 * 109.46091 * 178.24170 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6250 -2.5587 -0.8886 11 6 0.3709 -2.5802 1.2520 12 6 -0.3454 -3.9332 1.2754 13 6 0.6940 -5.0560 1.2433 14 7 1.5099 -4.9348 0.0284 15 6 2.4268 -6.0747 -0.1058 16 6 1.6355 -7.3245 -0.3941 17 6 1.1914 -8.2315 0.5071 18 7 0.5401 -9.1704 -0.1884 19 7 0.5736 -8.8623 -1.4368 20 7 1.2256 -7.7653 -1.6059 21 6 1.4755 -7.1045 -2.8894 22 6 2.6967 -7.7068 -3.5351 23 6 2.5818 -8.8586 -4.2909 24 6 3.7019 -9.4108 -4.8837 25 6 4.9367 -8.8110 -4.7212 26 6 5.0515 -7.6592 -3.9654 27 6 3.9315 -7.1071 -3.3725 28 6 2.2443 -3.6634 0.0067 29 1 -0.4850 0.8400 -0.0004 30 1 -0.3666 -1.7778 1.2309 31 1 0.9915 -2.4812 2.1426 32 1 -0.9967 -4.0153 0.4052 33 1 -0.9406 -4.0142 2.1849 34 1 0.1867 -6.0208 1.2455 35 1 1.3362 -4.9815 2.1210 36 1 2.9844 -6.2037 0.8219 37 1 3.1217 -5.8877 -0.9244 38 1 1.3348 -8.2029 1.5771 39 1 1.6398 -6.0397 -2.7238 40 1 0.6139 -7.2419 -3.5427 41 1 1.6163 -9.3244 -4.4221 42 1 3.6121 -10.3104 -5.4746 43 1 5.8118 -9.2427 -5.1840 44 1 6.0163 -7.1909 -3.8381 45 1 4.0212 -6.2075 -2.7817 46 1 2.8792 -3.5955 0.8900 47 1 2.8630 -3.6167 -0.8895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:50 Heat of formation + Delta-G solvation = 104.057588 kcal Electronic energy + Delta-G solvation = -27761.994392 eV Core-core repulsion = 24138.683699 eV Total energy + Delta-G solvation = -3623.310693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.24563 -40.21236 -39.79593 -36.17942 -35.72939 -33.94476 -32.36847 -32.06626 -31.86323 -31.43089 -28.08623 -27.25672 -26.88942 -23.95147 -23.75487 -23.39021 -23.12890 -22.68744 -21.20779 -20.33553 -18.52281 -18.35254 -17.88868 -17.16517 -16.78163 -16.33220 -16.29175 -15.93927 -15.73665 -15.63363 -15.09059 -14.94235 -14.52131 -14.32953 -14.31065 -14.18809 -13.84558 -13.73884 -13.43578 -13.38394 -12.92950 -12.82551 -12.62744 -12.55579 -12.46352 -12.33842 -11.94098 -11.84021 -11.80202 -11.67790 -11.37300 -11.07199 -10.85296 -10.63680 -10.35843 -10.14347 -9.89634 -9.88519 -9.18986 -8.05149 -6.18846 0.14236 0.43432 0.61824 1.43356 1.45034 1.53837 1.55994 1.60458 2.45117 2.84153 3.09871 3.22847 3.40287 3.51276 3.58744 3.87247 4.00044 4.08456 4.10637 4.19067 4.23813 4.28673 4.35476 4.43015 4.49474 4.55447 4.59896 4.64414 4.67472 4.77172 4.90255 4.92886 4.96584 5.00548 5.08910 5.11972 5.20119 5.23660 5.39545 5.47874 5.53688 5.54830 5.55464 5.63366 5.67110 5.97100 6.01269 6.12735 6.23268 6.24325 6.47112 6.95190 7.49594 7.53391 8.99187 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013191 B = 0.003381 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.087055 B = 8279.255500 C = 9805.298773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.055 3.945 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.109 4.109 13 C 0.068 3.932 14 N -0.543 5.543 15 C 0.126 3.874 16 C 0.008 3.992 17 C -0.056 4.056 18 N -0.303 5.303 19 N -0.112 5.112 20 N -0.266 5.266 21 C 0.152 3.848 22 C -0.128 4.128 23 C -0.104 4.104 24 C -0.131 4.131 25 C -0.111 4.111 26 C -0.129 4.129 27 C -0.106 4.106 28 C 0.083 3.917 29 H 0.258 0.742 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.207 0.793 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.133 0.867 46 H 0.026 0.974 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.451 -16.561 -5.980 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.075 0.925 9 C 0.036 3.964 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.147 4.147 13 C -0.060 4.060 14 N -0.269 5.269 15 C -0.004 4.004 16 C -0.125 4.125 17 C -0.214 4.214 18 N -0.168 5.168 19 N -0.090 5.090 20 N -0.060 5.060 21 C 0.032 3.968 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.148 4.148 25 C -0.129 4.129 26 C -0.147 4.147 27 C -0.125 4.125 28 C -0.044 4.044 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.224 0.776 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.044 0.956 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.183 -17.597 -7.097 20.664 hybrid contribution 0.947 2.130 1.094 2.575 sum 9.130 -15.467 -6.003 18.937 Atomic orbital electron populations 1.70044 1.07235 1.26898 1.51461 1.25697 0.95537 1.02273 0.95004 0.85676 0.78831 0.79716 0.78119 1.20286 1.21457 1.19053 1.21534 0.93155 0.91947 1.50309 0.92524 1.18561 0.92964 0.91409 0.93486 0.98604 1.21471 0.99185 0.95783 0.97829 1.21554 0.97564 0.95265 1.00355 1.22014 0.95226 0.98499 0.90269 1.61886 1.24183 1.01579 1.39222 1.20553 0.92070 0.84549 1.03193 1.22260 1.04983 1.00221 0.85082 1.23743 1.02549 0.92991 1.02160 1.75004 1.19324 1.24835 0.97588 1.78174 1.15405 1.01729 1.13718 1.47451 1.33649 1.16311 1.08548 1.21131 0.98284 0.97413 0.79952 1.19813 0.94254 0.97871 1.00948 1.21279 0.99917 0.94706 0.96323 1.21460 0.92516 1.00806 1.00066 1.21604 0.98318 0.95366 0.97595 1.21481 0.99178 0.96536 0.97471 1.21343 0.92000 1.00083 0.99059 1.22013 0.95223 0.87587 0.99546 0.93276 0.92774 0.95495 0.93973 0.91743 0.90643 0.94229 0.90214 0.88386 0.77583 0.85948 0.86312 0.85557 0.83932 0.83492 0.83757 0.84955 0.95562 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.11 11.35 21.45 0.24 -51.87 16 2 C 0.01 0.73 5.30 84.65 0.45 1.17 16 3 Si 0.95 42.25 29.54 68.60 2.03 44.27 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.53 -27.70 8.57 25.60 0.22 -27.48 16 8 H 0.06 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.58 2.26 -11.49 -0.03 2.56 16 10 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 11 C -0.10 -4.78 5.02 30.67 0.15 -4.63 16 12 C -0.11 -4.09 6.09 30.64 0.19 -3.90 16 13 C 0.07 2.09 5.30 86.33 0.46 2.55 16 14 N -0.54 -16.71 4.63 -900.93 -4.17 -20.88 16 15 C 0.13 2.95 4.93 85.56 0.42 3.37 16 16 C 0.01 0.21 5.84 41.36 0.24 0.45 16 17 C -0.06 -1.46 10.85 83.73 0.91 -0.56 16 18 N -0.30 -9.55 12.41 -58.26 -0.72 -10.27 16 19 N -0.11 -3.43 13.17 37.02 0.49 -2.95 16 20 N -0.27 -7.00 3.32 -338.09 -1.12 -8.13 16 21 C 0.15 3.27 6.28 85.63 0.54 3.81 16 22 C -0.13 -2.54 5.46 -19.86 -0.11 -2.65 16 23 C -0.10 -1.97 9.72 22.27 0.22 -1.75 16 24 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 25 C -0.11 -1.59 10.05 22.27 0.22 -1.37 16 26 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 27 C -0.11 -1.93 9.68 22.27 0.22 -1.72 16 28 C 0.08 3.03 4.68 86.32 0.40 3.43 16 29 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.05 2.88 6.15 -2.38 -0.01 2.86 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.08 2.16 6.33 -2.39 -0.02 2.14 16 35 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.10 2.03 6.49 -2.39 -0.02 2.02 16 38 H 0.21 4.13 8.06 -2.91 -0.02 4.10 16 39 H 0.12 2.63 7.47 -2.39 -0.02 2.61 16 40 H 0.12 2.34 8.12 -2.39 -0.02 2.32 16 41 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.13 2.17 6.88 -2.91 -0.02 2.15 16 46 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 47 H 0.07 2.37 7.99 -2.39 -0.02 2.35 16 Total: -1.00 -64.96 378.59 2.65 -62.32 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.95 Total: 17.83 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 4.95 Total: -30.34 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -5.28 Total: -94.09 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -64.96 2.65 -62.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.376 kcal (2) G-P(sol) polarization free energy of solvation -64.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds