Wall clock time and date at job start Tue Mar 31 2020 14:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00191 * 2 1 4 4 H 1.48500 * 109.47409 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46984 * 299.99515 * 3 2 1 6 6 H 1.48509 * 109.47029 * 59.99177 * 3 2 1 7 7 C 1.37884 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99353 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99871 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50453 * 299.91500 * 9 7 2 11 11 C 1.53116 * 109.50342 * 59.99834 * 9 7 2 12 12 C 1.53121 * 109.16062 * 177.59116 * 11 9 7 13 13 C 1.53033 * 109.28054 * 302.34682 * 12 11 9 14 14 N 1.46846 * 109.52077 * 59.17684 * 13 12 11 15 15 C 1.46909 * 110.99818 * 174.16291 * 14 13 12 16 16 C 1.50695 * 109.47328 * 63.71618 * 15 14 13 17 17 C 1.35348 * 126.91331 * 267.28529 * 16 15 14 18 18 N 1.33772 * 106.50036 * 179.97438 * 17 16 15 19 19 N 1.28642 * 108.88308 * 359.97438 * 18 17 16 20 20 N 1.28720 * 110.17489 * 359.75278 * 19 18 17 21 21 C 1.46504 * 125.86299 * 180.23955 * 20 19 18 22 22 C 1.50702 * 109.47192 * 276.69595 * 21 20 19 23 23 C 1.38234 * 119.99874 * 264.54242 * 22 21 20 24 24 C 1.38227 * 119.99990 * 179.74344 * 23 22 21 25 25 C 1.38234 * 120.00120 * 0.55373 * 24 23 22 26 26 C 1.38239 * 119.99722 * 359.70320 * 25 24 23 27 27 C 1.38225 * 120.00094 * 84.81577 * 22 21 20 28 28 C 1.46845 * 111.20322 * 298.25786 * 14 13 12 29 29 H 0.96994 * 120.00138 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.52389 * 57.68627 * 11 9 7 31 31 H 1.08998 * 109.57668 * 297.53219 * 11 9 7 32 32 H 1.09004 * 109.50377 * 182.40057 * 12 11 9 33 33 H 1.09005 * 109.50030 * 62.28737 * 12 11 9 34 34 H 1.09006 * 109.46260 * 299.16562 * 13 12 11 35 35 H 1.08995 * 109.46471 * 179.19671 * 13 12 11 36 36 H 1.09005 * 109.46920 * 183.71775 * 15 14 13 37 37 H 1.08998 * 109.46830 * 303.71502 * 15 14 13 38 38 H 1.08000 * 126.74914 * 359.93844 * 17 16 15 39 39 H 1.08997 * 109.47013 * 36.69855 * 21 20 19 40 40 H 1.09007 * 109.46656 * 156.69728 * 21 20 19 41 41 H 1.08002 * 120.00136 * 0.02562 * 23 22 21 42 42 H 1.08003 * 120.00427 * 180.27243 * 24 23 22 43 43 H 1.08002 * 120.00637 * 179.72171 * 25 24 23 44 44 H 1.08000 * 120.00024 * 180.02562 * 26 25 24 45 45 H 1.08005 * 119.99937 * 0.02562 * 27 22 21 46 46 H 1.08997 * 109.46861 * 181.76340 * 28 14 13 47 47 H 1.09008 * 109.45926 * 301.72891 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6249 -2.5579 0.8908 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3448 -3.9348 -1.2725 13 6 0.6952 -5.0569 -1.2400 14 7 1.5110 -4.9347 -0.0251 15 6 2.4286 -6.0741 0.1096 16 6 3.4047 -6.0716 -1.0385 17 6 3.2761 -6.7262 -2.2162 18 7 4.3704 -6.4409 -2.9308 19 7 5.1262 -5.6608 -2.2415 20 7 4.5828 -5.4093 -1.1020 21 6 5.1456 -4.5559 -0.0525 22 6 6.1249 -5.3520 0.7710 23 6 5.7136 -5.9486 1.9482 24 6 6.6106 -6.6833 2.7008 25 6 7.9217 -6.8118 2.2823 26 6 8.3344 -6.2107 1.1078 27 6 7.4359 -5.4809 0.3522 28 6 2.2448 -3.6629 -0.0038 29 1 -0.4850 0.8400 -0.0004 30 1 0.9923 -2.4828 -2.1398 31 1 -0.3670 -1.7793 -1.2302 32 1 -0.9400 -4.0164 -2.1820 33 1 -0.9960 -4.0168 -0.4022 34 1 1.3374 -4.9825 -2.1177 35 1 0.1885 -6.0219 -1.2417 36 1 2.9736 -5.9925 1.0501 37 1 1.8582 -7.0030 0.0997 38 1 2.4524 -7.3555 -2.5191 39 1 5.6584 -3.7092 -0.5088 40 1 4.3429 -4.1919 0.5890 41 1 4.6903 -5.8446 2.2775 42 1 6.2882 -7.1531 3.6183 43 1 8.6237 -7.3820 2.8726 44 1 9.3586 -6.3115 0.7805 45 1 7.7584 -5.0107 -0.5651 46 1 2.8636 -3.6155 0.8923 47 1 2.8797 -3.5951 -0.8873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:54 Heat of formation + Delta-G solvation = 125.981947 kcal Electronic energy + Delta-G solvation = -28516.320936 eV Core-core repulsion = 24893.960955 eV Total energy + Delta-G solvation = -3622.359982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.17648 -39.47758 -38.45697 -35.10259 -34.23006 -32.29173 -31.47358 -31.14884 -30.39806 -29.94311 -27.22197 -26.03059 -25.06847 -23.10566 -22.52145 -22.49817 -21.78833 -21.39095 -20.25745 -18.62419 -17.47218 -17.14361 -16.41432 -16.16881 -15.61637 -15.22477 -15.10108 -14.81960 -14.49564 -14.19255 -14.01852 -13.66063 -13.50108 -13.34320 -12.96450 -12.79619 -12.58344 -12.55856 -12.39624 -11.84588 -11.60968 -11.57700 -11.39823 -11.22324 -11.03459 -10.77315 -10.72879 -10.61126 -10.20254 -9.98772 -9.88936 -9.58180 -9.25397 -9.16102 -9.13619 -8.93294 -8.79260 -8.39138 -7.98050 -6.05404 -4.12392 0.92025 1.16593 1.74953 2.56295 2.75303 3.24772 3.33534 3.35763 3.59766 4.25173 4.36399 4.37730 4.43033 4.61031 4.71961 4.77228 4.87008 4.96666 5.10954 5.18838 5.25193 5.30429 5.33300 5.54615 5.57720 5.64260 5.70849 5.75517 5.81910 5.90969 5.99995 6.12991 6.16036 6.18490 6.25459 6.27760 6.33581 6.37845 6.61590 6.63005 6.70028 6.73883 6.79843 7.10055 7.25938 7.44429 7.56835 7.67747 7.96283 8.07279 8.36547 8.69495 8.90762 9.52700 11.00465 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.004307 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.240445 B = 6498.875222 C = 7813.952216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.036 0.964 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.521 5.521 15 C 0.120 3.880 16 C -0.037 4.037 17 C -0.051 4.051 18 N -0.276 5.276 19 N -0.089 5.089 20 N -0.271 5.271 21 C 0.139 3.861 22 C -0.114 4.114 23 C -0.095 4.095 24 C -0.123 4.123 25 C -0.110 4.110 26 C -0.124 4.124 27 C -0.089 4.089 28 C 0.059 3.941 29 H 0.260 0.740 30 H 0.028 0.972 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.183 0.817 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.059 0.941 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 -14.134 4.198 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.038 3.962 10 H 0.054 0.946 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.244 5.244 15 C -0.010 4.010 16 C -0.172 4.172 17 C -0.209 4.209 18 N -0.141 5.141 19 N -0.068 5.068 20 N -0.065 5.065 21 C 0.018 3.982 22 C -0.115 4.115 23 C -0.114 4.114 24 C -0.141 4.141 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.107 4.107 28 C -0.067 4.067 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.200 0.800 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.077 0.923 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 10.067 -13.715 3.673 17.405 hybrid contribution 0.194 0.851 -0.055 0.874 sum 10.261 -12.864 3.618 16.848 Atomic orbital electron populations 1.69887 1.05834 1.26351 1.50318 1.24909 0.94811 0.98944 0.94941 0.86601 0.80119 0.84005 0.77656 1.19865 1.21024 1.20940 1.21112 0.92680 0.90611 1.51205 0.92972 1.18663 0.92484 0.90021 0.95060 0.94557 1.21654 1.00052 0.94890 0.98319 1.21683 0.97156 0.96302 1.00420 1.22105 0.95453 0.99056 0.90258 1.62458 1.21829 1.01867 1.38213 1.21010 0.90381 0.97016 0.92636 1.23371 0.91158 1.00232 1.02410 1.23284 0.99983 1.05520 0.92103 1.75029 1.03116 1.11039 1.24897 1.78216 1.21376 1.15140 0.92088 1.47311 1.13866 1.32238 1.13081 1.21373 0.98248 0.91222 0.87310 1.19837 0.94597 1.00863 0.96228 1.21158 1.00018 0.96147 0.94065 1.21151 0.93592 0.99264 1.00054 1.21247 0.96147 0.98964 0.96457 1.21168 0.99750 0.98018 0.95266 1.21153 0.92636 0.97642 0.99283 1.22592 0.97015 0.89104 0.98008 0.93002 0.95308 0.88961 0.93332 0.91951 0.95158 0.91953 0.89932 0.88275 0.79976 0.86786 0.85418 0.85490 0.85621 0.85910 0.85777 0.85503 0.92282 0.96000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.51 11.35 55.43 0.63 -23.88 16 2 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -13.51 8.56 -34.44 -0.29 -13.80 16 8 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 9 C 0.06 1.33 2.26 -91.69 -0.21 1.12 16 10 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.55 5.02 -26.61 -0.13 -2.68 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C 0.06 0.96 4.98 -3.84 -0.02 0.94 16 14 N -0.52 -8.48 4.86 -236.11 -1.15 -9.63 16 15 C 0.12 1.55 5.50 -4.97 -0.03 1.53 16 16 C -0.04 -0.54 4.64 -82.09 -0.38 -0.92 16 17 C -0.05 -0.76 10.97 -17.74 -0.19 -0.95 16 18 N -0.28 -4.84 12.41 30.23 0.38 -4.46 16 19 N -0.09 -1.54 13.17 60.35 0.79 -0.75 16 20 N -0.27 -4.13 2.89 -58.22 -0.17 -4.30 16 21 C 0.14 1.83 5.43 -5.19 -0.03 1.81 16 22 C -0.11 -1.34 5.46 -104.63 -0.57 -1.91 16 23 C -0.10 -1.01 9.68 -39.59 -0.38 -1.39 16 24 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 25 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 26 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 27 C -0.09 -1.00 9.72 -39.59 -0.38 -1.38 16 28 C 0.06 1.13 3.03 -3.83 -0.01 1.12 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.03 0.53 6.76 -51.93 -0.35 0.18 16 35 H 0.06 0.86 8.09 -51.93 -0.42 0.43 16 36 H 0.08 0.96 6.73 -51.93 -0.35 0.61 16 37 H 0.10 1.07 8.10 -51.93 -0.42 0.64 16 38 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.11 1.48 8.12 -51.93 -0.42 1.06 16 40 H 0.13 1.71 3.97 -51.93 -0.21 1.50 16 41 H 0.13 1.19 6.99 -52.49 -0.37 0.83 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 46 H 0.06 1.06 6.13 -51.93 -0.32 0.74 16 47 H 0.02 0.45 6.32 -51.92 -0.33 0.12 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -30.21 368.59 -9.92 -40.13 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.85 Total: 3.35 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -4.09 Total: -21.73 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.48 Total: -43.02 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.21 -9.92 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.114 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds